Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G16290 1021 / 0 EMB2083 embryo defective 2083, AAA-type ATPase family protein (.1) AT5G42270 263 / 3e-76 FTSH5, VAR1 VARIEGATED 1, FtsH extracellular protease family (.1) AT1G50250 261 / 1e-75 FTSH1 FTSH protease 1 (.1) AT5G15250 251 / 5e-72 FTSH6, ATFTSH6 FTSH protease 6 (.1.2) AT2G30950 246 / 3e-70 FTSH2, VAR2 VARIEGATED 2, FtsH extracellular protease family (.1) AT1G06430 243 / 4e-69 FTSH8 FTSH protease 8 (.1) AT5G53170 233 / 9e-65 FTSH11 FTSH protease 11 (.1) AT2G26140 226 / 8e-63 FTSH4 FTSH protease 4 (.1) AT3G47060 223 / 3e-61 FTSH7 FTSH protease 7 (.1) AT5G58870 220 / 2e-60 FTSH9 FTSH protease 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037574 [exp] 1483 / 0 AT3G16290 1175 / 0.0 embryo defective 2083, AAA-type ATPase family protein (.1) Lus10012277 [exp] 256 / 8e-76 AT1G50250 935 / 0.0 FTSH protease 1 (.1) Lus10016003 [exp] 260 / 5e-75 AT5G42270 1129 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Lus10021824 [exp] 260 / 5e-75 AT5G42270 934 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Lus10001054 [exp] 241 / 2e-68 AT2G30950 1154 / 0.0 VARIEGATED 2, FtsH extracellular protease family (.1) Lus10001420 [exp] 241 / 1e-67 AT2G30950 1155 / 0.0 VARIEGATED 2, FtsH extracellular protease family (.1) Lus10034572 [exp] 228 / 7e-65 AT5G42270 791 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Lus10014930 [exp] 228 / 3e-63 AT5G53170 1077 / 0.0 FTSH protease 11 (.1) Lus10038819 [exp] 226 / 8e-63 AT5G53170 1064 / 0.0 FTSH protease 11 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G050600 [exp] 1078 / 0 AT3G16290 1159 / 0.0 embryo defective 2083, AAA-type ATPase family protein (.1) Potri.005G249200 [exp] 265 / 4e-77 AT5G42270 1077 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Potri.002G012000 [exp] 264 / 1e-76 AT5G42270 1094 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Potri.017G084000 [exp] 251 / 4e-72 AT5G15250 959 / 0.0 FTSH protease 6 (.1.2) Potri.002G215100 [exp] 240 / 6e-68 AT2G30950 1040 / 0.0 VARIEGATED 2, FtsH extracellular protease family (.1) Potri.014G139500 [exp] 238 / 2e-67 AT2G30950 1057 / 0.0 VARIEGATED 2, FtsH extracellular protease family (.1) Potri.015G020700 [exp] 239 / 5e-67 AT5G53170 1096 / 0.0 FTSH protease 11 (.1) Potri.012G000700 [exp] 224 / 6e-62 AT5G53170 1076 / 0.0 FTSH protease 11 (.1) Potri.006G227700 [exp] 219 / 1e-60 AT2G26140 1066 / 0.0 FTSH protease 4 (.1) Potri.001G249100 [exp] 218 / 1e-59 AT5G58870 997 / 0.0 FTSH protease 9 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0126 [flax] [poplar] Peptidase_MA PF01434 [flax] [poplar] Peptidase_M41 Peptidase family M41 CL0023 [flax] [poplar] P-loop_NTPase PF00004 [flax] [poplar] AAA ATPase family associated with various cellular activities (AAA)
Representative CDS sequence Show only first row Show all	>Lus10011432 pacid=23182610 polypeptide=Lus10011432 locus=Lus10011432.g ID=Lus10011432.BGIv1.0 annot-version=v1.0 ATGGCGGCGGCGGCGACTCATCATTTCCCTTTCTCCTCCGCCTCCACCACTTCACCCCGCCGCAACAAATTCCCACCAATTTTATGCCGAATTCATGACA CCGACGATGAACAACGGAATAACAAACTCCGGAAACCAAAAACCAATTTGAATTTAAATTTCCTCACTGTTCCCGTCACCCTCACTGTAATCTCCACAGC CCTATCCCAATCTCCTGCCCTTGCTGCAACTGAAACTGCTGCGAAGCCTGTACAACAGAAGCGGAAAACCTCGAAAAGGGCGGCGGAACCATTGACGCCC GAGCAGCTGCAGCAATGGACGAAAGATCTCCCATTTGTTTCCAGCCGAATGCCCTACACTGAAGTCCTGAGCTTGAAAGAGCAAGGAAAGCTCAAGCATG TGATTAAGCCTCCCAATGCGAAGATTAAAGATCAGCCTGAAGGGGTTCTCATAGTTTTGGATGATAACCAAGTGTTTAGAACCGTGTTGCCTTCTTTGAA AAGCAACATGAGGTTTTGGGACAAGTGGGATGAGTTAAAGATTGATGCTTTCTGTGTGAATGCGTATACTCCTCCTGTTAAAATTGGTAACTTGCCAACA ACGTATTTGGAAGTCTTGTTGAGAGTAATTCCAGCGTGGGCTTTCCAGATTTTTGAGCCTAAGAAGGAAGGGAAGAGGGCTATGGAGATGAGGAGGATGA AGGAAGAGTTCAGAAGGCAGCAGAAGGAAGGTGCTGAGAGGATGAGGCAGGAGAGGGAGATGATGGAGAAGGCTGCTAAATTGCAGAAGAAAGAGGAGCG TAGGGCGAAAAGGAAGGAAGAACAAAAGAGAAAGTTCGAGGCTTCGTTGCGAGATGCCCGTTTGAAGAATGCGAAGATGTCGATGTTTTGGGCGGATTTA GCAAGCGACTCTAACTTCACGACGCTATTGGGGATGGTGTTCTTTGTGATATTTTATCAGACTGTGGTGCTTAACTACAAGAAGCAGAAGAAGGATTATG ATGACAGGTTGAAAATCGAGAAGGCGGAGGCTGACGAGAGGAAGAAGATGAAGGAGATGGATAGGGAGATGATGGACATTGAGGAGAATGAGGATGCTGA TGAAGGAGGCGAGGAAGGAGGGGATAGAGAGCAGAATGCGTACCTGAAGATGGCTACTCAGTTCATGAAGTCCGGGGCGAGGGTTAAGCGAGCAAATAAC AAGAAATCGCCTCAGTATTTGGAGAGGGACGTGGATGTGAAGTTCACTGATGTTGCTGGGCTTGGCAAGATAAGGCTGGAGCTTGAGGAGATTGTTAAGT TCTTCACACATGGTGACATGTACAGAAGGAGAGGAGTCAAGATACCAGGTGGAATACTTCTTTGTGGTCCTCCTGGTGTCGGGAAGACGTTATTAGCTAA AGCTGTGGCTGGAGAGGCAGGCGTGAATTTCTTCTCCATTTCTGCCTCTCAGTTTGTTGAAATATATGTTGGGGTTGGCGCTTCTCGTGTTCGGTCACTT TACCAAGAAGCTCGAGAAAATGCTCCATCGGTGGTCTTCATTGACGAGTTGGATGCTGTTGGTCGAGAACGTGGTCTGATCAAAGGGTCTGGTGGGCAAG AACGTGATGCTACGCTTAATCAGCTCCTGGTATGCCTGGATGGATTTGAGGGGCGAGGTGAAGTCATCACAATTGCTTCCACAAATAGACCAGATATCCT AGATCCAGCCCTTGTCCGACCTGGCCGGTTTGATAGGAAAATCGACATTCCTAAACCCGGTGTCATAGGTCGCATGGAAATACTGAAGGTCCATGCTCGC AAAAAGCCGGTGGCTGAAGATGTGGACTATAGGGCAGTTGCCACTGTGACTGATGGGATGGTTGGTGCGGAGCTTGCTAACATACTTGAAATTGCAGCAA TTAATATGATCCGTGATGGGAGAACTGAGATTACTACGGATGACTTGTTACAAGCTGCACAAATAGAGGAGAGAGGACTTTTAGATAGGAAAGATAGGAG CGCTGAGGCCTGGAGGCAAGTAGCTATCAACGAAGCATCGATGGCTGTTGTGGCCTTGAACTTTGCTGATCTAAGGACTATCGAGTTTGTGACCATAGCT CCTCGAGCTGGTAGAGAACTTGGCTATGTCCGGGTAAAACTGGATCATCTCAAATTTAACGCAGGGATGCTCAGCCGGCAATCCCTACTGGATCATATCA CTGTACAAGTAGCACCACGAGCAGCTGATGAGTTGTGGTACGGCAAGGGTCAGTTGAGTACAATATGGGCTGAAACAGCAGACAATGCTCGGTCGGCTGC ACGAACCTATGTTCTTGGTGGGCTTTCAGAGAATCATTATGGAATATCCGACTTCTGGGTTACGGACCGGCTAAACGCAATAGATGTAGAGGCACTACAG ATTCTGAACATGTGCTATGATCGTGCAAAGGAGATTCTCAAGAATAACCGGGCGCTGATGGATGCTATCGTGGATCGACTTGTCGACCAGAAGAGCTTGT CTAAAAAAGAGTTTTACGAGCTAGTTGATTTGCATGGCTCGATTAGACCGTTGCCGCCAAGTCTAGTCGACATCAGAGTTGCCAAGCGTGAAGAGTTTCA AAGAATAATGACGAAAATGAGCCAGAAGAAGACCGAAGTAATCGACAGTAATGTATGA
AA sequence Show only first row Show all	>Lus10011432 pacid=23182610 polypeptide=Lus10011432 locus=Lus10011432.g ID=Lus10011432.BGIv1.0 annot-version=v1.0 MAAAATHHFPFSSASTTSPRRNKFPPILCRIHDTDDEQRNNKLRKPKTNLNLNFLTVPVTLTVISTALSQSPALAATETAAKPVQQKRKTSKRAAEPLTP EQLQQWTKDLPFVSSRMPYTEVLSLKEQGKLKHVIKPPNAKIKDQPEGVLIVLDDNQVFRTVLPSLKSNMRFWDKWDELKIDAFCVNAYTPPVKIGNLPT TYLEVLLRVIPAWAFQIFEPKKEGKRAMEMRRMKEEFRRQQKEGAERMRQEREMMEKAAKLQKKEERRAKRKEEQKRKFEASLRDARLKNAKMSMFWADL ASDSNFTTLLGMVFFVIFYQTVVLNYKKQKKDYDDRLKIEKAEADERKKMKEMDREMMDIEENEDADEGGEEGGDREQNAYLKMATQFMKSGARVKRANN KKSPQYLERDVDVKFTDVAGLGKIRLELEEIVKFFTHGDMYRRRGVKIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSL YQEARENAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGEVITIASTNRPDILDPALVRPGRFDRKIDIPKPGVIGRMEILKVHAR KKPVAEDVDYRAVATVTDGMVGAELANILEIAAINMIRDGRTEITTDDLLQAAQIEERGLLDRKDRSAEAWRQVAINEASMAVVALNFADLRTIEFVTIA PRAGRELGYVRVKLDHLKFNAGMLSRQSLLDHITVQVAPRAADELWYGKGQLSTIWAETADNARSAARTYVLGGLSENHYGISDFWVTDRLNAIDVEALQ ILNMCYDRAKEILKNNRALMDAIVDRLVDQKSLSKKEFYELVDLHGSIRPLPPSLVDIRVAKREEFQRIMTKMSQKKTEVIDSNV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G16290		EMB2083	embryo defective 2083, AAA-typ...		Lus10011432 [exp]	0	1
AT3G16290		EMB2083	embryo defective 2083, AAA-typ...		Lus10037574 [exp]	1.0	0.9522
AT1G72040			P-loop containing nucleoside t...		Lus10008257 [exp]	1.4	0.9271
AT4G33760			tRNA synthetase class II (D, K...		Lus10037243 [exp]	2.4	0.8640
AT1G28530			unknown protein		Lus10015294 [exp]	8.5	0.8320
AT1G29370			Kinase-related protein of unkn...		Lus10007339 [exp]	9.9	0.8372
AT5G24650			Mitochondrial import inner mem...		Lus10015593 [exp]	12.2	0.8094
AT4G30400			RING/U-box superfamily protein...		Lus10023206 [exp]	12.7	0.7917
AT2G40690		SFD1, GLY1	SUPPRESSOR OF FATTY ACID DESAT...		Lus10029028 [exp]	13.6	0.8169
AT5G49910		CPHSC70-2EATSHO...	HEAT SHOCK PROTEIN 70-7, chlor...		Lus10039044 [exp]	13.9	0.8347
AT3G17970		ATTOC64-III	translocon at the outer membra...		Lus10009682 [exp]	14.1	0.8380

Compare expression of checked genes

Lus10011432 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.