Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79800 115 / 2e-32 AtENODL7 early nodulin-like protein 7 (.1) AT3G20570 85 / 1e-20 AtENODL9 early nodulin-like protein 9 (.1) AT3G18590 84 / 2e-20 AtENODL5 early nodulin-like protein 5 (.1) AT5G14345 81 / 1e-19 AtENODL21 early nodulin-like protein 21 (.1) AT2G25060 81 / 2e-19 AtENODL14 early nodulin-like protein 14 (.1) AT1G48940 81 / 3e-19 AtENODL6 early nodulin-like protein 6 (.1) AT5G57920 79 / 2e-18 AtENODL10 early nodulin-like protein 10 (.1) AT3G60280 78 / 8e-18 UCC3 uclacyanin 3 (.1) AT4G30590 77 / 1e-17 AtENODL12 early nodulin-like protein 12 (.1) AT4G31840 77 / 2e-17 AtENODL15 early nodulin-like protein 15 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037575 [exp] 230 / 3e-77 AT1G79800 127 / 4e-37 early nodulin-like protein 7 (.1) Lus10024846 [exp] 147 / 7e-45 AT1G79800 147 / 1e-44 early nodulin-like protein 7 (.1) Lus10018758 [exp] 144 / 6e-44 AT1G79800 142 / 2e-43 early nodulin-like protein 7 (.1) Lus10009617 [exp] 86 / 8e-21 AT3G18590 148 / 1e-45 early nodulin-like protein 5 (.1) Lus10012085 [exp] 81 / 4e-19 AT5G07475 142 / 4e-43 Cupredoxin superfamily protein (.1) Lus10018617 [exp] 80 / 2e-18 AT4G28365 150 / 5e-46 early nodulin-like protein 3 (.1) Lus10039852 [exp] 79 / 2e-18 AT4G28365 150 / 8e-46 early nodulin-like protein 3 (.1) Lus10003432 [exp] 79 / 4e-18 AT5G25090 167 / 5e-53 early nodulin-like protein 13 (.1) Lus10022522 [exp] 79 / 5e-18 AT3G18590 95 / 2e-24 early nodulin-like protein 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G187700 [exp] 121 / 6e-35 AT1G79800 176 / 2e-56 early nodulin-like protein 7 (.1) Potri.003G050500 [exp] 117 / 4e-33 AT1G79800 162 / 1e-50 early nodulin-like protein 7 (.1) Potri.006G264600 [exp] 86 / 4e-21 AT2G25060 184 / 9e-60 early nodulin-like protein 14 (.1) Potri.002G161300 [exp] 86 / 5e-21 AT5G26330 146 / 5e-45 Cupredoxin superfamily protein (.1) Potri.017G011200 [exp] 85 / 2e-20 AT4G32490 157 / 2e-48 early nodulin-like protein 4 (.1) Potri.006G184100 [exp] 84 / 2e-20 AT4G31840 174 / 5e-56 early nodulin-like protein 15 (.1) Potri.011G117800 [exp] 87 / 3e-20 AT5G53870 158 / 3e-45 early nodulin-like protein 1 (.1) Potri.018G018200 [exp] 84 / 3e-20 AT2G25060 177 / 7e-57 early nodulin-like protein 14 (.1) Potri.011G135400 [exp] 84 / 4e-20 AT3G20570 138 / 4e-41 early nodulin-like protein 9 (.1) Potri.006G259101 [exp] 81 / 4e-19 AT5G26330 142 / 2e-43 Cupredoxin superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0026 [flax] [poplar] CU_oxidase PF02298 [flax] [poplar] Cu_bind_like Plastocyanin-like domain
Representative CDS sequence Show only first row Show all	>Lus10011433 pacid=23182628 polypeptide=Lus10011433 locus=Lus10011433.g ID=Lus10011433.BGIv1.0 annot-version=v1.0 ATGAACTACTCTTATGAACCAGCCGTGGGTCTCTTCGTCTTCTTCGTTGTCTTCAACTCGGCCGCTTACTGCGAAGCAACGGTGTTCAAGGTTGGCGATG GCTTCGGATGGCAGCAGCCAACGACAAACACCACTACTCAACTTTACTACACTCACTGGGCTACCAATCACAGATTCCAAGTCGGAGATTCCCTCCTGTT CGAGTACAAGAACGATTCAGTGGCAAAGGTCGACGAATGGGGATACAGCCACTGCAACGCTAGCACATCCATGGAAGTTTTCTACGATGGGAACAGCAGC TTTGTGCTCGAGAAGCCTGGACCTTTCTACTTCATCAGTGGGCACTTCGGCCATTGCCAGAACGGAATGGTGCTTCTTGTCGAAGTCATGCACCAGCGCC GTCACGATAGCATGGCTCCCGAGGCGGAGTATGCTAATCCACCTGAAGGGTCTTCGTCGGAGTCTTCTCCTTCCTCGTCCATGGAGCCACGACAGCCGAG TTCGGCAGCGATCGTGTCGGTTATAGTCAGTTCAGTCACTGTTGTCCTTATCGCTACATTCGTCGCTCTGGCGTGGTGTTCGCCGTGA
AA sequence Show only first row Show all	>Lus10011433 pacid=23182628 polypeptide=Lus10011433 locus=Lus10011433.g ID=Lus10011433.BGIv1.0 annot-version=v1.0 MNYSYEPAVGLFVFFVVFNSAAYCEATVFKVGDGFGWQQPTTNTTTQLYYTHWATNHRFQVGDSLLFEYKNDSVAKVDEWGYSHCNASTSMEVFYDGNSS FVLEKPGPFYFISGHFGHCQNGMVLLVEVMHQRRHDSMAPEAEYANPPEGSSSESSPSSSMEPRQPSSAAIVSVIVSSVTVVLIATFVALAWCSP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G79800		AtENODL7	early nodulin-like protein 7 (...		Lus10011433 [exp]	0	1
AT5G04550			Protein of unknown function (D...		Lus10002840 [exp]	2.0	0.7264
AT3G02920		ATRPA32B	Replication protein A, subunit...		Lus10015505 [exp]	6.9	0.7201
AT1G72570	AP2_ERF		Integrase-type DNA-binding sup...		Lus10037670 [exp]	6.9	0.7688
AT5G27510			Protein kinase superfamily pro...		Lus10034285 [exp]	8.9	0.7059
AT2G27410	B3		Domain of unknown function (DU...		Lus10035393 [exp]	8.9	0.6970
AT3G58060			Cation efflux family protein (...		Lus10029300 [exp]	20.1	0.7010
AT4G30380		EXLB2	Barwin-related endoglucanase (...		Lus10013118 [exp]	23.9	0.7502
AT1G13340			Regulator of Vps4 activity in ...		Lus10017591 [exp]	27.1	0.7033
AT4G35190		LOG5	LONELY GUY 5, Putative lysine ...		Lus10025117 [exp]	29.0	0.6992
AT3G58690			Protein kinase superfamily pro...		Lus10033606 [exp]	30.4	0.7230

Compare expression of checked genes

Lus10011433 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.