Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G80350 839 / 0 FTR, FRC2, FRA2, BOT1, ATKTN1, AAA1, LUE1, ERH3, MAD5 KATANIN 1, FAT ROOT, FURCA2, FRAGILE FIBER 2, ECTOPIC ROOT HAIR 3, BOTERO 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G34560 293 / 8e-95 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT2G27600 267 / 7e-84 ATSKD1, VPS4, SKD1 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) AT3G27120 260 / 6e-81 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G45500 245 / 9e-75 AAA-type ATPase family protein (.1.2) AT3G19740 225 / 4e-64 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G50140 213 / 7e-60 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT4G28000 211 / 1e-59 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G52882 208 / 1e-58 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G64110 207 / 3e-58 DAA1 DUO1-activated ATPase 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023115 [exp] 982 / 0 AT1G80350 906 / 0.0 KATANIN 1, FAT ROOT, FURCA2, FRAGILE FIBER 2, ECTOPIC ROOT HAIR 3, BOTERO 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10038499 [exp] 290 / 5e-93 AT2G34560 579 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10023310 [exp] 284 / 2e-88 AT2G34560 551 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10019537 [exp] 272 / 6e-86 AT2G27600 791 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) Lus10004891 [exp] 272 / 6e-86 AT2G27600 801 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) Lus10020589 [exp] 259 / 3e-80 AT2G27600 776 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) Lus10043381 [exp] 255 / 5e-79 AT2G27600 778 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) Lus10038001 [exp] 249 / 2e-76 AT2G45500 679 / 0.0 AAA-type ATPase family protein (.1.2) Lus10009233 [exp] 248 / 6e-76 AT2G45500 670 / 0.0 AAA-type ATPase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G057800 [exp] 843 / 0 AT1G80350 814 / 0.0 KATANIN 1, FAT ROOT, FURCA2, FRAGILE FIBER 2, ECTOPIC ROOT HAIR 3, BOTERO 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.001G176900 [exp] 823 / 0 AT1G80350 809 / 0.0 KATANIN 1, FAT ROOT, FURCA2, FRAGILE FIBER 2, ECTOPIC ROOT HAIR 3, BOTERO 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.011G085200 [exp] 297 / 4e-96 AT2G34560 577 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.004G065100 [exp] 285 / 2e-91 AT2G34560 600 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.009G144300 [exp] 275 / 6e-87 AT2G27600 776 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) Potri.004G184500 [exp] 273 / 3e-86 AT2G27600 740 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) Potri.010G237100 [exp] 270 / 5e-85 AT2G27600 702 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) Potri.008G022300 [exp] 267 / 4e-84 AT2G27600 703 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) Potri.008G022216 [exp] 263 / 2e-82 AT2G27600 701 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) Potri.001G331200 [exp] 256 / 2e-77 AT3G27120 661 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0671 [flax] [poplar] AAA_lid PF09336 [flax] [poplar] Vps4_C Vps4 C terminal oligomerisation domain CL0023 [flax] [poplar] P-loop_NTPase PF00004 [flax] [poplar] AAA ATPase family associated with various cellular activities (AAA)
Representative CDS sequence Show only first row Show all	>Lus10011477 pacid=23182638 polypeptide=Lus10011477 locus=Lus10011477.g ID=Lus10011477.BGIv1.0 annot-version=v1.0 ATGGTGGGAACATCGCTAGCTGGAGTTCAAGACCACTTGAAATTAGCAAGGGAGTACGCCCTTGAAGGCCTCTACGACACTGCCATCATCTTCTTCGATG GCGCCATTGCTCAGATCAACAAGCACCTTAACTCACTTGACGACCCTTTACTTCGCACGAAATGGATGAACGTCAAGAGGGCAATCTCGGAGGAGACGGA AGTTGTGAAGCAGTTGGATGTGGAGAGAAGGTCATTTAAGGAAGCTCCTGCTGCTACCCGACGTGCTGCTTCGCCTCCGATTAATACGAAATCGTCATTT GTGTTCCAACCTCTGGACGAGTATCCCACTTCTTCTTCCAATGCTTCTTCTTTTGACGATCCTGACGTATGGAGGCCACCGAGTCGAGACAATGCGAGTA GGAGACCGGGTGGTAGAGCTGGCCAAGTGGGAATGAGGAAGTCGCCACAGGATGGAGCTTGGGCGCGCGGTGGATCGACGAAAGCTGGACCAACTGGCCG TGGAGGAAAGACTACTACGGCTTCTAGTAAGGTGAATACGGGAATTCGGTCTTCAACTGCTGGAAAGAAGACCACTACTGCAGCTGGAAAGTCTAGCAAG CCAGATTCAATTAATGGCGATGTTGATGATGATAAACCTAAGAAGCCTCAATACGAAGGGCCTGATGCAGACTTAGCCGCAATGCTTGAAAGGGATGTCC TAGAAACAACACCTGGAGTTAGATGGGATGATGTCGCTGGGCTTAGTGAAGCAAAGCGGCTTCTGGAAGAAGCTGTAGTCCTTCCTTTGTGGATGCCTGA ATATTTCCAGGGCATTAGAAGACCCTGGAAAGGTGTTCTTATGTTTGGACCTCCCGGTACCGGAAAGACTCTACTTGCCAAAGCTGTTGCTACTGAATGC GGTACCACGTTTTTCAATGTTTCATCTGCTACTTTGGCTTCCAAATGGCGTGGTGAGAGTGAGCGTATGGTTCGATGCTTGTTTGATCTCGCACGTGCTT ATGCACCCAGTACCATTTTCATCGATGAGATTGATTCCTTGTGCAATTCCAGAGGTGCTTCAGGGGAGCACGAGTCCTCGAGACGAGTGAAATCCGAGCT TCTAGTTCAAGTTGATGGTGTAAGTAACAGTGCCACGAATGAAGACGGAACCAAGAAACTAGTGATGGTTCTTGCCGCTACAAATTTCCCATGGGACATA GATGAAGCTCTGAGGAGGAGATTGGAGAAGCGTATATATATTCCGCTTCCGAGTTTCGAAAGTCGCAGGGAGCTTATCAAGATAAACTTGAAAACTGTGG AGATGGCTGCTGATGTCGACATCGATGATGTGGCGCGTCGGACAGAGGGGTACAGTGGAGACGATCTGACAAATGTCTGCCGCGATGCCTCCCTGAACGG GATGAGGCGCAAGATAGCCGGGAAGACTCGAGACGAGATCAAGAACATGTCCAAGGACGAGATCTCGAACGATCCGGTCGCCATGTGTGATTTCGAGGAG GCCATTAAGAAGGTCCAACCCAGTGTCTCTCAAGCTGATATTGAGAAGCACGAGAAATGGTTTAATGAGTTTGGTTCGGCTTAA
AA sequence Show only first row Show all	>Lus10011477 pacid=23182638 polypeptide=Lus10011477 locus=Lus10011477.g ID=Lus10011477.BGIv1.0 annot-version=v1.0 MVGTSLAGVQDHLKLAREYALEGLYDTAIIFFDGAIAQINKHLNSLDDPLLRTKWMNVKRAISEETEVVKQLDVERRSFKEAPAATRRAASPPINTKSSF VFQPLDEYPTSSSNASSFDDPDVWRPPSRDNASRRPGGRAGQVGMRKSPQDGAWARGGSTKAGPTGRGGKTTTASSKVNTGIRSSTAGKKTTTAAGKSSK PDSINGDVDDDKPKKPQYEGPDADLAAMLERDVLETTPGVRWDDVAGLSEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATEC GTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNSRGASGEHESSRRVKSELLVQVDGVSNSATNEDGTKKLVMVLAATNFPWDI DEALRRRLEKRIYIPLPSFESRRELIKINLKTVEMAADVDIDDVARRTEGYSGDDLTNVCRDASLNGMRRKIAGKTRDEIKNMSKDEISNDPVAMCDFEE AIKKVQPSVSQADIEKHEKWFNEFGSA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G80350		FTR, FRC2, FRA2...	KATANIN 1, FAT ROOT, FURCA2, F...		Lus10011477 [exp]	0	1
AT1G80350		FTR, FRC2, FRA2...	KATANIN 1, FAT ROOT, FURCA2, F...		Lus10023115 [exp]	1.0	0.9259
AT1G76400			Ribophorin I (.1)		Lus10025159 [exp]	2.0	0.9023
AT1G76400			Ribophorin I (.1)		Lus10016038 [exp]	3.5	0.8789
AT5G42660			Protein of unknown function (D...		Lus10016294 [exp]	4.8	0.8386
AT1G21870		GONST5	golgi nucleotide sugar transpo...		Lus10025645 [exp]	5.0	0.8719
AT4G00110		GAE3	UDP-D-glucuronate 4-epimerase ...		Lus10015876 [exp]	6.9	0.8546
AT1G18650		PDCB3	plasmodesmata callose-binding ...		Lus10026662 [exp]	8.7	0.8435
AT4G02010			Protein kinase superfamily pro...		Lus10037526 [exp]	8.9	0.8754
AT1G29470			S-adenosyl-L-methionine-depend...		Lus10042767 [exp]	10.6	0.8636
AT4G00740		QUA3	QUASIMODO 3, S-adenosyl-L-meth...		Lus10041363 [exp]	10.8	0.8597

Compare expression of checked genes

Lus10011477 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.