Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08470 1085 / 0 EMB2817, PEX1 EMBRYO DEFECTIVE 2817, peroxisome 1 (.1) AT3G53230 267 / 2e-75 ATPase, AAA-type, CDC48 protein (.1) AT5G03340 266 / 4e-75 ATPase, AAA-type, CDC48 protein (.1) AT3G09840 252 / 2e-70 ATCDC48, CDC48A, CDC48 cell division cycle 48 (.1) AT3G01610 237 / 6e-65 CDC48C, EMB1354 embryo defective 1354, cell division cycle 48C (.1) AT2G03670 224 / 2e-62 CDC48B cell division cycle 48B (.1) AT1G03000 222 / 2e-59 PEX6 peroxin 6 (.1) AT3G56690 215 / 4e-57 CIP111 Cam interacting protein 111 (.1) AT5G19990 161 / 1e-42 ATSUG1, RPT6A regulatory particle triple-A ATPase 6A (.1) AT5G20000 161 / 2e-42 RPT6A AAA-type ATPase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023123 [exp] 1986 / 0 AT5G08470 1163 / 0.0 EMBRYO DEFECTIVE 2817, peroxisome 1 (.1) Lus10037385 [exp] 261 / 2e-73 AT5G03340 1501 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10021441 [exp] 260 / 7e-73 AT5G03340 1529 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10021442 [exp] 248 / 7e-69 AT5G03340 1520 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10016123 [exp] 247 / 2e-68 AT5G03340 1526 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10016124 [exp] 245 / 7e-68 AT5G03340 1511 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10001402 [exp] 230 / 9e-65 AT3G53230 803 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10023018 [exp] 235 / 1e-64 AT5G03340 1419 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10018033 [exp] 229 / 1e-63 AT2G03670 813 / 0.0 cell division cycle 48B (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G174100 [exp] 1347 / 0 AT5G08470 1259 / 0.0 EMBRYO DEFECTIVE 2817, peroxisome 1 (.1) Potri.012G088200 [exp] 265 / 8e-75 AT5G03340 1459 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.016G091600 [exp] 263 / 6e-74 AT3G53230 1484 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.015G080600 [exp] 263 / 8e-74 AT5G03340 1455 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.006G125500 [exp] 262 / 1e-73 AT5G03340 1496 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.017G108200 [exp] 259 / 9e-73 AT5G03340 1311 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.001G128700 [exp] 244 / 6e-69 AT2G03670 766 / 0.0 cell division cycle 48B (.1) Potri.014G133000 [exp] 225 / 1e-60 AT1G03000 1165 / 0.0 peroxin 6 (.1) Potri.013G151600 [exp] 221 / 1e-59 AT3G01610 747 / 0.0 embryo defective 1354, cell division cycle 48C (.1) Potri.006G035000 [exp] 194 / 4e-50 AT3G56690 1080 / 0.0 Cam interacting protein 111 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0402 [flax] [poplar] Cdc48_2-like PF09262 [flax] [poplar] PEX-1N Peroxisome biogenesis factor 1, N-terminal CL0023 [flax] [poplar] P-loop_NTPase PF00004 [flax] [poplar] AAA ATPase family associated with various cellular activities (AAA)
Representative CDS sequence Show only first row Show all	>Lus10011485 pacid=23182646 polypeptide=Lus10011485 locus=Lus10011485.g ID=Lus10011485.BGIv1.0 annot-version=v1.0 ATGGAGTTCGAAGTACACCATGTCTCTGGCGCAGAGAATTGCTTTGTTTCCCTCCCATTACAACTCATCCAGACTTTGGATTCGCTCCGGCCTTCTCTTC TTCCTCAGCCTCAGCTGCTTGTACTTGAGCTCCGCTCGTTTAGTTCCACCGCTGACCATCATAGTTGGACAGTGTCCTGGTCTGGTGCTACTTCCTCTTC TTCCGCTATTGAGATTGGTAGGCAGTTTGCAGAGTGCATTTCGTTGCTTGATCACTCGAGAGTTCGAGTTAAAGTGGTTTCAAATGTGGAGCATGCTGAA CGAGTGACAGTGGAGCCTGATACTGAAGACGACTGGGAAGTAATGGAGCTCAAAGCAGAGTTTGCCGAGGCATCCATGTTAAGCCAGGTTGCTCTTGGTT ATGCTGTATATGGTGCAGACGTTAGTACTGGATTACAGTGTCTCACTTTCAGAACTTATTCTTCACATACCCTATTTCGCTACATGCAGGTCAAAATCGT TAGAGAGGGAATGAGATTTCCTTTATGGTTGCATGGCCACTCTGTTGTTACCTTCCGTGTGGTTTCAACACTTCCCAAGAAAGCAGTGGGTACATCTGCG ATTTCTGTCACTTTCTTATTTCAGAGTCCTTATTCTCTCTGGCTAAGTTTCTTGAATCCATTTATCAGATTGAGGATCGCAAGTGAAATTGTTGGTGACA CAGTTCAACTTGGTCAAGATACAGAAGTAGAAGTTGCTCCTAAGATACGCCAAAAGCTTGTGAATAAATCAGATGCCTCTGTGCAGTCATCTGATAAGCA ACACAATGCGAAGGAGGCATTGCTGCGAATTCAAGATTCAGATAGAAGATTGTTTCAGCGATGTAATGTCAAAGGTGTTGATTTGGAGGTTGCTCTTACC ACTGTTGCTTATATCCACCCGGAAACGGCTAAATGCTTTTTGTTTGAGTCTCTTCAGTTGGTTGTTGTCATCCCAAAATTCTCATCAAGAGAGAAGGTAG ACAACGAGGCATCGAGAATGAAAAGCACTTCAGCTCCCAAAGATATTGCTGCTGCGACAGAGAAGGAAGTATCTCGTCGAGCGATTATCCGACTTGTGTT TTCAGACTCTGTGTCCAAAGGGCATCTGATGATAGCTGAGTCTCTTCGTTTAAGCTTAAGAACTGGTCTTCATTCATGGGTTTACGTGAAAGAATATTAT GGTGGTCTCAGGGAGGATATTTCATTGCTCTCACTTTCTCCCTGCAAGATAAAGACGATTGGAAAGGACAGGTCGGTGGGAAAATTCGGCATGGAAGGGC TTAGTAGCCATAGAAGGGCGAAGCTGCAAATGATGATTTCAAAAAGTACTCCTGGGGAAAACTTAGATGAAACAGATACTCTTACACATGGCGACTTAAT GGCCTCTCTTTTGTCTGATTTCTCTCATATAGAAAGTGCAGAACGGATGAATAGATCTGATAGTACAAAGACACTAAACATACTTCTTCATGCTTGGCTT GGTGCACAACTTGAAGCAATTGCTTCAGCTTCGGGTGTAGAAGTTAATTCGTTCACTTTAGGAAAGGAGACTGTAATACACTTTGAACTGAAAGGAGTTG ATGATGGGACAGGAAGAAAATCTGATTCTACTGCCGTTCTACAAGATAAGATTGGTGAAGTGCCAGTTACATTCCTGTATCTGCTGACAGCTCCAGAGGA TTCTCCACAAGAAAATGCATATCAGCTGTCTTTTGATAAATGCAAAAGCGATGATTTGGTAGTTAAAGAGTTGTCCATCAATCTTAAACTTGGTGAACCT GTATTCATATATTCTCCAAAGGAAAGAACCTCTGGCAAGGGCTCCGAATCAGATGCATCTTCTTTGAGCTGGATGGGTTCAACTCTTACTGATGTAATTA ATAGAGTGCACGTTTTGCTATCGCCTAGTTCTGTTTCTTGGTTTGGCACTAACAATCTTCGCCTCCCTGGCCATGTTCTAATATATGGACCGCATGGTTC TGGAAAGACCATGTTAGCAAAAGCTGTGGCCAATTTCGTTGAAAGACACGGAGACATATTAGCACATGTGGTTTTTGTAAGCTGCTCTGGTCTTGCTTCG GAAAAGCCCATGACCATTCGTCAGGAACTATCAGCTTCTATCTCTGAAGCGTTAGATCATGCACCTTCAGTTGTAATCTTTGATGATCTTGATATCATTG TTTCAGCATCTCCTGATTCTGAAGTGTCTCAGCCTTCAACTTCTGTTGTTGCACTGACAAAATACCTAGCTGATGTTATTGACGAATATGGGGAAAAGAG GAATAGCTCATGTGGCATTGGTCCAATCGCTTTCATAGCTTCTCTGCAGCGACTGGAGAATATACCTCAATCACTGAGCTCTTCAGGTAGATTTGACTTT CATGTGGAACTTCCTGCTCCTGCGGCATCTGAACGTGGGGCTATTTTGAAGCATGAAATACAGAAGCGTTCCTTACATTGTCCAGAAGACGTTTTATTGG ATGTAGCATCCAAATGTGATGGTTATGATGCATATGATCTGGAAATATTGGTTGATAGGGCGGTACACGCTGCAGTTGGCCGCTTTCTTCCTTCTCTTTC TAATGGAGAACATCAAATACCAACTTTACTTATGGGCAACTTCTTGAGGGCAATGGATGGGTTCCTTCCAGTTGCTATGCGTGATATTACTAAAACTGCT TCTGAAGGTGGTCGTTCCGGATGGGAAGATGTTGGTGGACTGAATGATGTCAGAAATGCTATAAGAGAGATGATTGAGTTGCCATCAAAATTCCCAAATA TCTTTGCACAAGCGCCTTTAAGATTGCGTTCAAACGTTCTTCTCTATGGTCCTCCTGGTTGTGGCAAGACTCACATTGTAGGTGCTGCAGCTGCTGCTTG TTCACTCCGGTTTATATCAGTGAAGGGACCTGAGCTGTTGAACAAATATATCGGTGCTTCTGAACAAGCGGTTCGTGATATTTTCGCAAAAGCAGCTGCA GCAGCACCTTGCCTTCTCTTCTTTGATGAATTTGATTCAATAGCGCCTAAAAGAGGACATGATAACACCGGCGTAACCGATCGGGTTGTCAACCAATTTC TGACTGAATTAGACGGTGTCGAAGTTTTGACTGGCGTTTTCGTATTTGCTGCCACAAGTCGACCAGACCTGCTTGATGCTGCACTGTTGAGACCTGGTAG GCTAGATAGACTTCTTTTCTGCGACTTTCCATCCCAACAAGAAAGGTTGGATATCCTTAAAGTTCTCTGCAGAAAGCTGCCATTGGCCGAAGACGTAAAC TTGCACAATGTAGCTCGCAAGACGGAGGGATTTAGTGGAGCTGACCTACAAGCTCTTCTCTCCGATGCACAACTTGCCGCAGTTCACGAGTTTTTGAACA CCGTCGACACCGCCACAACAACCTCGCCGGAGAAAAAGCCAGTGATGACTGATTCTGTGTTGAATGACATTGCCACCAAAGCAAGACCATCGATTTCGGA ATCGGAGAAACAGAGACTGTATGGCATTTATAGCCAGTTTCTCGATTCTAAGAAGTCTGCAGACGCACAGATGAGGGATGCCAAGGGCAAACGGGCGACG CTAGCCTGA
AA sequence Show only first row Show all	>Lus10011485 pacid=23182646 polypeptide=Lus10011485 locus=Lus10011485.g ID=Lus10011485.BGIv1.0 annot-version=v1.0 MEFEVHHVSGAENCFVSLPLQLIQTLDSLRPSLLPQPQLLVLELRSFSSTADHHSWTVSWSGATSSSSAIEIGRQFAECISLLDHSRVRVKVVSNVEHAE RVTVEPDTEDDWEVMELKAEFAEASMLSQVALGYAVYGADVSTGLQCLTFRTYSSHTLFRYMQVKIVREGMRFPLWLHGHSVVTFRVVSTLPKKAVGTSA ISVTFLFQSPYSLWLSFLNPFIRLRIASEIVGDTVQLGQDTEVEVAPKIRQKLVNKSDASVQSSDKQHNAKEALLRIQDSDRRLFQRCNVKGVDLEVALT TVAYIHPETAKCFLFESLQLVVVIPKFSSREKVDNEASRMKSTSAPKDIAAATEKEVSRRAIIRLVFSDSVSKGHLMIAESLRLSLRTGLHSWVYVKEYY GGLREDISLLSLSPCKIKTIGKDRSVGKFGMEGLSSHRRAKLQMMISKSTPGENLDETDTLTHGDLMASLLSDFSHIESAERMNRSDSTKTLNILLHAWL GAQLEAIASASGVEVNSFTLGKETVIHFELKGVDDGTGRKSDSTAVLQDKIGEVPVTFLYLLTAPEDSPQENAYQLSFDKCKSDDLVVKELSINLKLGEP VFIYSPKERTSGKGSESDASSLSWMGSTLTDVINRVHVLLSPSSVSWFGTNNLRLPGHVLIYGPHGSGKTMLAKAVANFVERHGDILAHVVFVSCSGLAS EKPMTIRQELSASISEALDHAPSVVIFDDLDIIVSASPDSEVSQPSTSVVALTKYLADVIDEYGEKRNSSCGIGPIAFIASLQRLENIPQSLSSSGRFDF HVELPAPAASERGAILKHEIQKRSLHCPEDVLLDVASKCDGYDAYDLEILVDRAVHAAVGRFLPSLSNGEHQIPTLLMGNFLRAMDGFLPVAMRDITKTA SEGGRSGWEDVGGLNDVRNAIREMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFAKAAA AAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSQQERLDILKVLCRKLPLAEDVN LHNVARKTEGFSGADLQALLSDAQLAAVHEFLNTVDTATTTSPEKKPVMTDSVLNDIATKARPSISESEKQRLYGIYSQFLDSKKSADAQMRDAKGKRAT LA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G08470		EMB2817, PEX1	EMBRYO DEFECTIVE 2817, peroxis...		Lus10011485 [exp]	0	1
AT4G18240		ATSS4, SSIV	ARABIDOPSIS THALIANA STARCH SY...		Lus10023319 [exp]	2.4	0.8784
AT3G54610		ATGCN5, HAG1, H...	HISTONE ACETYLTRANSFERASE 1, g...		Lus10002718 [exp]	3.7	0.8209
AT3G15390		SDE5	silencing defective 5 (.1.2)		Lus10018188 [exp]	6.7	0.8236
AT2G36720			Acyl-CoA N-acyltransferase wit...		Lus10027738 [exp]	6.9	0.8679
AT2G47300			ribonuclease Ps (.2.3)		Lus10001156 [exp]	7.7	0.8399
AT3G13690			Protein kinase protein with ad...		Lus10018944 [exp]	13.0	0.8233
AT5G48040			Ubiquitin carboxyl-terminal hy...		Lus10012201 [exp]	15.7	0.8348
AT1G80550			Pentatricopeptide repeat (PPR)...		Lus10011439 [exp]	19.0	0.8119
AT5G08470		EMB2817, PEX1	EMBRYO DEFECTIVE 2817, peroxis...		Lus10023123 [exp]	28.3	0.7957
AT4G34430		ATSWI3D, CHB3	SWITCH/SUCROSE NONFERMENTING 3...		Lus10042329 [exp]	33.6	0.8365

Compare expression of checked genes

Lus10011485 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.