Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37650 445 / 4e-151 GRAS SGR7, SHR SHORT ROOT, SHOOT GRAVITROPISM 7, GRAS family transcription factor (.1) AT1G21450 148 / 4e-38 GRAS SCL1 SCARECROW-like 1 (.1) AT3G49950 145 / 4e-38 GRAS GRAS family transcription factor (.1) AT2G04890 145 / 4e-38 GRAS SCL21 SCARECROW-like 21 (.1) AT1G50600 147 / 1e-37 GRAS SCL5 scarecrow-like 5 (.1) AT5G48150 138 / 4e-35 GRAS PAT1 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) AT1G66350 135 / 8e-34 GRAS RGL1 RGA-like 1 (.1) AT3G03450 126 / 9e-31 GRAS RGL2 RGA-like 2 (.1) AT5G17490 122 / 3e-29 GRAS AtRGL3, RGL3 RGA-like protein 3 (.1) AT2G01570 119 / 3e-28 GRAS RGA1 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019281 [exp] 740 / 0 AT4G37650 509 / 2e-177 SHORT ROOT, SHOOT GRAVITROPISM 7, GRAS family transcription factor (.1) Lus10025200 [exp] 522 / 0 AT4G37650 484 / 8e-169 SHORT ROOT, SHOOT GRAVITROPISM 7, GRAS family transcription factor (.1) Lus10012089 [exp] 509 / 9e-177 AT4G37650 483 / 2e-167 SHORT ROOT, SHOOT GRAVITROPISM 7, GRAS family transcription factor (.1) Lus10019361 [exp] 363 / 1e-119 AT4G37650 403 / 5e-136 SHORT ROOT, SHOOT GRAVITROPISM 7, GRAS family transcription factor (.1) Lus10039709 [exp] 151 / 9e-40 AT3G49950 350 / 3e-117 GRAS family transcription factor (.1) Lus10018498 [exp] 150 / 3e-39 AT3G49950 347 / 3e-116 GRAS family transcription factor (.1) Lus10014852 [exp] 145 / 7e-38 AT3G49950 504 / 3e-178 GRAS family transcription factor (.1) Lus10011076 [exp] 136 / 1e-34 AT3G49950 502 / 2e-177 GRAS family transcription factor (.1) Lus10042776 [exp] 136 / 8e-34 AT1G21450 682 / 0.0 SCARECROW-like 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G063300 [exp] 474 / 1e-162 AT4G37650 576 / 0.0 SHORT ROOT, SHOOT GRAVITROPISM 7, GRAS family transcription factor (.1) Potri.017G019900 [exp] 380 / 5e-127 AT4G37650 405 / 1e-137 SHORT ROOT, SHOOT GRAVITROPISM 7, GRAS family transcription factor (.1) Potri.007G132000 [exp] 367 / 1e-122 AT4G37650 410 / 4e-140 SHORT ROOT, SHOOT GRAVITROPISM 7, GRAS family transcription factor (.1) Potri.017G041500 [exp] 168 / 5e-46 AT3G49950 370 / 2e-125 GRAS family transcription factor (.1) Potri.007G119000 [exp] 159 / 1e-42 AT3G49950 369 / 7e-125 GRAS family transcription factor (.1) Potri.005G186500 [exp] 154 / 3e-40 AT1G21450 685 / 0.0 SCARECROW-like 1 (.1) Potri.002G073400 [exp] 150 / 6e-39 AT1G21450 707 / 0.0 SCARECROW-like 1 (.1) Potri.001G361700 [exp] 150 / 7e-39 AT1G50600 637 / 0.0 scarecrow-like 5 (.1) Potri.014G164400 [exp] 145 / 3e-37 AT5G48150 716 / 0.0 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Potri.001G409500 [exp] 142 / 6e-36 AT5G48150 518 / 3e-180 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03514 [flax] [poplar] GRAS GRAS domain family
Representative CDS sequence Show only first row Show all	>Lus10011542 pacid=23140376 polypeptide=Lus10011542 locus=Lus10011542.g ID=Lus10011542.BGIv1.0 annot-version=v1.0 ATGGATACATTGTTCAGATTAGTCAATCTCCAACAATACTACAACCACCAAGAACAACATCAACAACAACAACAACAACAACAATCTGATCACTCTTTCA CTTCCACCACCACCACCACAAGCTCCCGCTCCTCCTCCCATCACTACCCTTCCGCTGCGGCCTACACCGTCTACGACAGCCATCCTTACTATCAATACGG CCAGCAGCACGCAGCCGTCGAAGGCGTCCAACAACAACAACAATCTGATCACTCTTTCACTTCCACCACCACCACCACAAGCTCCCGCTCCTCCTCCCAT CACTACCCTTCCGCTGCGGCCTACACCGTCTACGACAGCCATCCTTACTATCAATACGGCCAGCAGCAAGCAGCCGGCGAAGGGTTCCATCAAGACGACG TCGTTTCCGTCCAAGAATGCTTCAACAACACCAACAACAACTCTTTCATGGATGAAGACGACTTCATCTCCTCCTCCTCCACCTCCAAACCCCCTTCCCC TCCTCACCAAAATTACTACCCTACCCCTCCCCCTCCTCCCGCCCCGGTACACGTCGATGAAACGGTGCCGTTTGACTTCTCCAAGCCGGAATGGGCTGGA ACCATCTTACTAGACGCGGCGCGTGCGATTGCCACGGGGGACAGTCACCGGCTGAACCACTTAATGTGGGTGCTCAATGAGGTCGCCTCGCCGTACGGCG ATCGCGACCAGAAGCTGGCGTCTTACTTTCTTCAGGCGATATTCAGCAGGATGACGAACTCCGGCCGGCGGTCTCTCCGATCGATCTCCTCCGCCTCCGA CAAATCCTCGTCATTCGACTCTACACGTAAGCTTCTCCTCAAATTTCAAGAAGTCTCCCCCTGGACGACTTTCGGACACGTGTCGTCCAACGGGGCCATC CTGGAATCCGTCGGGTCCCACCCGAAAATCCACGTCATCGACTTTAGCAACACGTTTTGTACCCAGTGGCCAACTTTCCTGGAATCACTCGCCACGCGTG CCGACGTCGTCGACACGCCTCACCTCCGTCTAACCACCGTCGCCGCCGCCTCCGGCGGTGGCGCCACCCGTGTGATGAAGGAGATAAGCTCCCGGATGGA GAAATTCGCGAGGCTGATGGGCGTTCCGTTCAAATTCGATGTTATCCATCACTCCGGGGACTTGTCTGAGCTGGATTTTGGTAAGCTCGGGGTGCGGGAC GACGAGGCTGTGGCAATAAACTGCATGGGATCGCTCCGGTCGGTGTCGCCTGTATTGAACCGGAGGGACTATGTGGTGTCGAGGTTTAAAAATTTGCGGC CGAGGATTGTGACGGTGGTGGAGGAGGAGGCGGACTTCGACGCCGGCGGCGATTTTGTTAGGGGTTTTGAGGAGTGGTTGAGGTGGTTTAGGGTTTACAT GGAGTGTTTGGAGGAGAGCTTCCCGAGGACGAGCAACGAGAGGCTGATGCTGGAGAGGAGGGCCGGGAGGGCGATATTGGACCTGGTGGCGTGTCCAGTT GAAGAGTCGACGGAGCGGAGGGAGACGGCGGAGGGGTGGTCGGCGAAGTTTGATCGGAGCGGGTTTGGTGGAGTTGGGTTTAGTGAGGAGGTTTGTGATG ACGTGAAGGCGTTGTTAAGGAGGTATAAGGATGGGTGGTCGATGAGACAGAACGACGGCGGAATCGACGGCGGCGGCGGAGGAGGAATGTTCTTGTGTTG GAAGGAACAGCCTGTGGTTTGGGCAAGTGCATGGAGAATGATTGATTGA
AA sequence Show only first row Show all	>Lus10011542 pacid=23140376 polypeptide=Lus10011542 locus=Lus10011542.g ID=Lus10011542.BGIv1.0 annot-version=v1.0 MDTLFRLVNLQQYYNHQEQHQQQQQQQQSDHSFTSTTTTTSSRSSSHHYPSAAAYTVYDSHPYYQYGQQHAAVEGVQQQQQSDHSFTSTTTTTSSRSSSH HYPSAAAYTVYDSHPYYQYGQQQAAGEGFHQDDVVSVQECFNNTNNNSFMDEDDFISSSSTSKPPSPPHQNYYPTPPPPPAPVHVDETVPFDFSKPEWAG TILLDAARAIATGDSHRLNHLMWVLNEVASPYGDRDQKLASYFLQAIFSRMTNSGRRSLRSISSASDKSSSFDSTRKLLLKFQEVSPWTTFGHVSSNGAI LESVGSHPKIHVIDFSNTFCTQWPTFLESLATRADVVDTPHLRLTTVAAASGGGATRVMKEISSRMEKFARLMGVPFKFDVIHHSGDLSELDFGKLGVRD DEAVAINCMGSLRSVSPVLNRRDYVVSRFKNLRPRIVTVVEEEADFDAGGDFVRGFEEWLRWFRVYMECLEESFPRTSNERLMLERRAGRAILDLVACPV EESTERRETAEGWSAKFDRSGFGGVGFSEEVCDDVKALLRRYKDGWSMRQNDGGIDGGGGGGMFLCWKEQPVVWASAWRMID

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G37650	GRAS	SGR7, SHR	SHORT ROOT, SHOOT GRAVITROPISM...		Lus10011542 [exp]	0	1
AT4G37650	GRAS	SGR7, SHR	SHORT ROOT, SHOOT GRAVITROPISM...		Lus10019281 [exp]	2.0	0.8368
AT4G00150	GRAS	ATHAM3, SCL6, L...	LOST MERISTEMS 3, ARABIDOPSIS ...		Lus10028934 [exp]	4.5	0.8266
AT4G00150	GRAS	ATHAM3, SCL6, L...	LOST MERISTEMS 3, ARABIDOPSIS ...		Lus10004353 [exp]	4.9	0.8233
AT4G24670		TAR2	tryptophan aminotransferase re...		Lus10027678 [exp]	8.1	0.8074
AT3G22680		RDM1	RNA-DIRECTED DNA METHYLATION 1...		Lus10039354 [exp]	8.5	0.8441
AT5G06790			unknown protein		Lus10023815 [exp]	13.0	0.7903
AT5G48480			Lactoylglutathione lyase / gly...		Lus10020400 [exp]	25.9	0.7622
AT3G58570			P-loop containing nucleoside t...		Lus10030075 [exp]	26.8	0.7747
AT2G33620	AT-hook		AT hook motif DNA-binding fami...		Lus10011067 [exp]	27.4	0.8265
AT3G09000			proline-rich family protein (....		Lus10004824 [exp]	29.7	0.8095

Compare expression of checked genes

Lus10011542 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.