Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G67580 165 / 4e-49 MYB ATTBP3, TRB2, ATTRB2 TELOMERE-BINDING PROTEIN 3, TELOMERE REPEAT BINDING FACTOR 2, Homeodomain-like/winged-helix DNA-binding family protein (.1.2) AT3G49850 164 / 6e-49 MYB TBP2, TRB3, ATTRB3 TELOMERE-BINDING PROTEIN 2, telomere repeat binding factor 3 (.1) AT1G49950 163 / 2e-48 MYB ATTRB1, TRB1 telomere repeat binding factor 1 (.1.2.3) AT1G17520 96 / 1e-22 MYB Homeodomain-like/winged-helix DNA-binding family protein (.1) AT1G72740 91 / 5e-21 MYB Homeodomain-like/winged-helix DNA-binding family protein (.1.2) AT1G72650 47 / 8e-06 MYB TRFL6 TRF-like 6 (.1.2) AT1G15720 43 / 0.0001 MYB TRFL5 TRF-like 5 (.1) AT1G17460 43 / 0.0002 MYB TRFL3 TRF-like 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019260 [exp] 386 / 1e-135 AT5G67580 201 / 5e-63 TELOMERE-BINDING PROTEIN 3, TELOMERE REPEAT BINDING FACTOR 2, Homeodomain-like/winged-helix DNA-binding family protein (.1.2) Lus10025203 [exp] 204 / 2e-64 AT1G49950 175 / 3e-53 telomere repeat binding factor 1 (.1.2.3) Lus10012092 [exp] 203 / 2e-64 AT1G49950 182 / 3e-56 telomere repeat binding factor 1 (.1.2.3) Lus10033775 [exp] 117 / 3e-29 AT5G15340 635 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10014653 [exp] 116 / 6e-29 AT5G15340 634 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10040111 [exp] 98 / 1e-23 AT1G72740 135 / 6e-38 Homeodomain-like/winged-helix DNA-binding family protein (.1.2) Lus10030935 [exp] 98 / 3e-23 AT1G72740 171 / 5e-51 Homeodomain-like/winged-helix DNA-binding family protein (.1.2) Lus10027621 [exp] 96 / 3e-23 AT1G72740 107 / 1e-27 Homeodomain-like/winged-helix DNA-binding family protein (.1.2) Lus10024200 [exp] 56 / 1e-08 AT1G15720 65 / 5e-11 TRF-like 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G004900 [exp] 261 / 1e-86 AT5G67580 224 / 6e-72 TELOMERE-BINDING PROTEIN 3, TELOMERE REPEAT BINDING FACTOR 2, Homeodomain-like/winged-helix DNA-binding family protein (.1.2) Potri.007G005000 [exp] 251 / 5e-82 AT5G67580 212 / 1e-66 TELOMERE-BINDING PROTEIN 3, TELOMERE REPEAT BINDING FACTOR 2, Homeodomain-like/winged-helix DNA-binding family protein (.1.2) Potri.001G292700 [exp] 181 / 2e-55 AT1G49950 273 / 2e-91 telomere repeat binding factor 1 (.1.2.3) Potri.009G087000 [exp] 163 / 2e-48 AT1G49950 277 / 5e-93 telomere repeat binding factor 1 (.1.2.3) Potri.018G066300 [exp] 128 / 3e-35 AT1G72740 186 / 6e-58 Homeodomain-like/winged-helix DNA-binding family protein (.1.2) Potri.006G147400 [exp] 117 / 3e-31 AT1G17520 209 / 2e-66 Homeodomain-like/winged-helix DNA-binding family protein (.1) Potri.013G154500 [exp] 49 / 2e-06 AT5G58340 88 / 4e-18 myb-like HTH transcriptional regulator family protein (.1.2) Potri.006G126300 [exp] 42 / 0.0003 AT2G37025 120 / 2e-29 TRF-like 8 (.1.2) Potri.006G054401 [exp] 41 / 0.0007 AT1G68030 104 / 1e-24 RING/FYVE/PHD zinc finger superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00538 [flax] [poplar] Linker_histone linker histone H1 and H5 family CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10011546 pacid=23140387 polypeptide=Lus10011546 locus=Lus10011546.g ID=Lus10011546.BGIv1.0 annot-version=v1.0 ATGGGTGCTCCTAAGCAGAAATGGACGGCAGAAGAGGAGACTGCCCTGAAAGCCGGAGTGGTGAAGCATGGGACGGGCAAATGGCGTACGATACTTATGG ATCCACAGTTCAGTTCGGTCTTGCGCCTTCGTTCTAACGTTGATCTCAAAGATAAATGGAGAAACATAAATGTGACTGCAATTTGGGGTTCTAGACAAAA GGCGAAGCTTGCACTTAAGGGTGGCGGCTCATTGACTCCTAAACGTGTCGAGAGCTCCAGCACTCCGACCAGTGTGATACACTACAATGAAGAATTTGCT GCTGCTGCTGCTGACCCTAAGCCTCTTGCAATTTCCGGTGGTACGCTGCTGAGTAGGGGCTCGAAGGAACTACTTCCAAAGTTGGGAAGTCTGATATTAG AGGCTATTACTACTTTGAGAGAGCCAAGTGGTTCCGACAGAACATCAATTGCTATGTACATAGAGGACAGAAAGCTATTGGCAGTCCCAAACCTTCGTAA GCTGTTGGCCGGAAAGCTAAAGCTTTTAACAGCTTCTGGAAAGTTGGTCAAGGTGAAGCACAAGTACAGAATCGCGCCAAGTTCACAAATCTCAGAAGGA CTGAAAAGCTCTCCCCTTAAGAACACTTTAACTTTGGAGAACATCAGCACCAAAATTGTGACCAAGTCTCAGGTTCAGCAAGAGATACTGAGAATACAAG GGGTGACAGCCGAAGAGGCTGCAGCAGCAGCGGCAAAGGCGGTTGCAGAAGCGGAGGTTGCGATTGCAGAGGCTGCAGAGGCCTCGAGGGAAGCCGAGAG AGCAGAGGCCGAAGCAGAAGCCTGCCAAGTTTTCGCGGAAGCGGCTAAGAAAGCTTATAGGTATCGAGCTCGTCAGTCATGGTGA
AA sequence Show only first row Show all	>Lus10011546 pacid=23140387 polypeptide=Lus10011546 locus=Lus10011546.g ID=Lus10011546.BGIv1.0 annot-version=v1.0 MGAPKQKWTAEEETALKAGVVKHGTGKWRTILMDPQFSSVLRLRSNVDLKDKWRNINVTAIWGSRQKAKLALKGGGSLTPKRVESSSTPTSVIHYNEEFA AAAADPKPLAISGGTLLSRGSKELLPKLGSLILEAITTLREPSGSDRTSIAMYIEDRKLLAVPNLRKLLAGKLKLLTASGKLVKVKHKYRIAPSSQISEG LKSSPLKNTLTLENISTKIVTKSQVQQEILRIQGVTAEEAAAAAAKAVAEAEVAIAEAAEASREAERAEAEAEACQVFAEAAKKAYRYRARQSW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G67580	MYB	ATTBP3, TRB2, A...	TELOMERE-BINDING PROTEIN 3, TE...		Lus10011546 [exp]	0	1
AT5G67580	MYB	ATTBP3, TRB2, A...	TELOMERE-BINDING PROTEIN 3, TE...		Lus10019260 [exp]	1.0	0.9382
AT5G05987		PRA1.A2	prenylated RAB acceptor 1.A2 (...		Lus10001021 [exp]	2.0	0.9178
AT4G30560		ATCNGC9	cyclic nucleotide gated channe...		Lus10022155 [exp]	2.4	0.9174
AT3G03860		ATAPRL5	APR-like 5 (.1)		Lus10005703 [exp]	2.8	0.8950
AT4G25672		CPuORF12	conserved peptide upstream ope...		Lus10027512 [exp]	3.2	0.8935
AT1G24560			unknown protein		Lus10038257 [exp]	3.5	0.8833
AT3G19553			Amino acid permease family pro...		Lus10040966 [exp]	4.2	0.8744
AT3G58030			RING/U-box superfamily protein...		Lus10016255 [exp]	5.1	0.8573
AT2G46520			cellular apoptosis susceptibil...		Lus10026635 [exp]	5.7	0.8317
AT5G43100			Eukaryotic aspartyl protease f...		Lus10018709 [exp]	5.7	0.8759

Compare expression of checked genes

Lus10011546 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.