Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49690 241 / 7e-78 MYB ATMYB84, RAX3 REGULATOR OF AXILLARY MERISTEMS3, myb domain protein 84 (.1) AT5G57620 242 / 1e-77 MYB ATMYB36 myb domain protein 36 (.1) AT5G65790 239 / 6e-76 MYB AtMYB68 myb domain protein 68 (.1) AT4G37780 233 / 1e-74 MYB ATMYB87 myb domain protein 87 (.1) AT2G36890 217 / 1e-68 MYB BIT1, ATMYB38, RAX2 REGULATOR OF AXILLARY MERISTEMS 2, BLUE INSENSITIVE TRAIT 1, MYB DOMAIN PROTEIN 38, Duplicated homeodomain-like superfamily protein (.1) AT5G23000 210 / 2e-65 MYB ATMYB37, RAX1 REGULATOR OF AXILLARY MERISTEMS 1, myb domain protein 37 (.1) AT5G56110 185 / 1e-55 MYB MS188, ATMYB80, AtMYB103 MALE STERILE 188, ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 80, myb domain protein 103 (.1) AT5G15310 170 / 5e-50 MYB ATMYB16, ATMIXTA myb domain protein 16 (.1.2) AT4G05100 167 / 9e-49 MYB ATMYB74 myb domain protein 74 (.1) AT4G09460 164 / 1e-48 MYB ATMYB6, ATMYB8 myb domain protein 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039646 [exp] 463 / 4e-164 AT5G57620 244 / 6e-79 myb domain protein 36 (.1) Lus10007248 [exp] 256 / 1e-82 AT5G57620 259 / 3e-84 myb domain protein 36 (.1) Lus10028248 [exp] 254 / 3e-82 AT5G65790 253 / 2e-82 myb domain protein 68 (.1) Lus10001316 [exp] 246 / 1e-79 AT5G57620 280 / 2e-93 myb domain protein 36 (.1) Lus10006978 [exp] 245 / 3e-79 AT5G57620 286 / 6e-96 myb domain protein 36 (.1) Lus10021428 [exp] 233 / 2e-74 AT5G57620 248 / 2e-80 myb domain protein 36 (.1) Lus10013830 [exp] 234 / 3e-74 AT5G57620 236 / 1e-75 myb domain protein 36 (.1) Lus10026543 [exp] 230 / 5e-73 AT2G36890 234 / 6e-75 REGULATOR OF AXILLARY MERISTEMS 2, BLUE INSENSITIVE TRAIT 1, MYB DOMAIN PROTEIN 38, Duplicated homeodomain-like superfamily protein (.1) Lus10016139 [exp] 230 / 6e-73 AT5G57620 236 / 6e-76 myb domain protein 36 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G113700 [exp] 253 / 1e-81 AT3G49690 239 / 5e-77 REGULATOR OF AXILLARY MERISTEMS3, myb domain protein 84 (.1) Potri.007G007900 [exp] 250 / 1e-80 AT3G49690 253 / 1e-82 REGULATOR OF AXILLARY MERISTEMS3, myb domain protein 84 (.1) Potri.018G095900 [exp] 249 / 5e-80 AT5G57620 275 / 2e-90 myb domain protein 36 (.1) Potri.006G170800 [exp] 243 / 8e-78 AT5G57620 268 / 5e-88 myb domain protein 36 (.1) Potri.016G099200 [exp] 236 / 2e-75 AT5G57620 234 / 3e-75 myb domain protein 36 (.1) Potri.004G215100 [exp] 235 / 6e-75 AT5G57620 240 / 2e-77 myb domain protein 36 (.1) Potri.006G123400 [exp] 233 / 4e-74 AT5G57620 233 / 9e-75 myb domain protein 36 (.1) Potri.009G007100 [exp] 233 / 5e-74 AT5G57620 239 / 5e-77 myb domain protein 36 (.1) Potri.006G234200 [exp] 231 / 6e-74 AT3G49690 232 / 7e-75 REGULATOR OF AXILLARY MERISTEMS3, myb domain protein 84 (.1) Potri.018G058800 [exp] 223 / 3e-71 AT3G49690 224 / 1e-72 REGULATOR OF AXILLARY MERISTEMS3, myb domain protein 84 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10011606 pacid=23142759 polypeptide=Lus10011606 locus=Lus10011606.g ID=Lus10011606.BGIv1.0 annot-version=v1.0 ATGGGAAGAGCACCTTGCTGTGACAAAGCCAATGTTAAGAAAGGGCCTTGGTCCCCTGAGGAAGACGCTAAGCTCAAATCCTACATCGACCAACACGGCA CCGGCGGCAATTGGATCGCCCTCCCTCAGAAGATTGGGCTGAAGAGATGCGGCAAGAGCTGCAGACTAAGATGGCTGAATTATCTGCGTCCAAACCTCAA GCATGGTGGCTTCTCGGACCAAGAAGACCACATCATTTGCAGCCTCTACCTCAGCATCGGAAGCAGGTGGTCGATAATAGCAGCGCAATTACCAGGGAGG ACTGATAATGACATCAAGAACTACTGGAACACCCGCCTCAAGAAGAAGCTCTTGGGTAGTAAACACCACCGCAAAAGTAATGACCACACTGCCCGCCGAA CCAACAACACCTTTCTCAAACACAGTGACGACACTCCCTCGCCCATGCTCCCTCCTCCCGACCACGACCTTATGATGATGATGATGATGGATCATCATCA GAAAGAGATAGCAGCAGCAGCAGCTCATCAGTACTGGCTCCCCGGAATCATGATGGCCGCACTACCACCACCAGACATGTTGGTGACGAAGCTGCAGGGA TCAGCTGGAAATCTAGTGTTCCACAACAATGATAATGAGTATGATCAGAACCAATATAATAACCAGCAGCAGCTCCAAGCCATGATGGGGAACAGTACTA GTACTACTAGCCTGTCTCCTAATTCGTCCGTGTCAATGGAAAGCTCCTTCGCTAATCCATCATCATCAGTACTAGTGTTCCAGGACCTAAGTACTAGTTT CCTTGCAGGGCTCGGGATGGGAAATGATGACAACGATGATCGGCTGGCTGTTGTCCACAACCCTTTGGAATTGGACGATGATCTTCAGAATTGGTATGGA TCATATGATCAACAAATGGGTGACGGCGGCAGTAGCTCCTCCGAGAGCACAGGTAAAAATGTGAACCCAATGGTGGGATATTTTGATCCTCTTCTTCAGC ACCTTGTTTCTGACAACTACAGTACTGAAATCCATGGGTTTCTTCCACCTTTGGAACAGTCACCCATTTACTTCTCGCCGCCGCAATGA
AA sequence Show only first row Show all	>Lus10011606 pacid=23142759 polypeptide=Lus10011606 locus=Lus10011606.g ID=Lus10011606.BGIv1.0 annot-version=v1.0 MGRAPCCDKANVKKGPWSPEEDAKLKSYIDQHGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNLKHGGFSDQEDHIICSLYLSIGSRWSIIAAQLPGR TDNDIKNYWNTRLKKKLLGSKHHRKSNDHTARRTNNTFLKHSDDTPSPMLPPPDHDLMMMMMMDHHQKEIAAAAAHQYWLPGIMMAALPPPDMLVTKLQG SAGNLVFHNNDNEYDQNQYNNQQQLQAMMGNSTSTTSLSPNSSVSMESSFANPSSSVLVFQDLSTSFLAGLGMGNDDNDDRLAVVHNPLELDDDLQNWYG SYDQQMGDGGSSSSESTGKNVNPMVGYFDPLLQHLVSDNYSTEIHGFLPPLEQSPIYFSPPQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G57620	MYB	ATMYB36	myb domain protein 36 (.1)		Lus10011606 [exp]	0	1
AT5G22390			Protein of unknown function (D...		Lus10020626 [exp]	1.0	0.9141
AT4G23730			Galactose mutarotase-like supe...		Lus10017549 [exp]	6.9	0.8281
AT4G11600		LSC803, PHGPX, ...	glutathione peroxidase 6 (.1)		Lus10008022 [exp]	9.5	0.8148
AT5G01740			Nuclear transport factor 2 (NT...		Lus10017421 [exp]	10.2	0.8404
AT1G28380		NSL1	necrotic spotted lesions 1, MA...		Lus10025453 [exp]	11.3	0.8065
AT2G47710			Adenine nucleotide alpha hydro...		Lus10006703 [exp]	11.7	0.9136
AT2G47710			Adenine nucleotide alpha hydro...		Lus10007043 [exp]	13.9	0.8968
AT2G29120		ATGLR2.7	GLUTAMATE RECEPTOR 2.7, gluta...		Lus10013952 [exp]	20.6	0.8161
AT2G28940			Protein kinase superfamily pro...		Lus10016536 [exp]	23.0	0.8062
AT2G23140			RING/U-box superfamily protein...		Lus10011514 [exp]	23.9	0.8292

Compare expression of checked genes

Lus10011606 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.