Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G29680 576 / 0 CDC6, ATCDC6 cell division control 6 (.1.2) AT1G07270 566 / 0 Cell division control, Cdc6 (.1) AT4G14700 137 / 4e-34 ORC1, ATORC1A, ORC1A origin recognition complex 1 (.1) AT4G12620 122 / 2e-29 ORC1B, ATORC1B, UNE13 UNFERTILIZED EMBRYO SAC 13, origin of replication complex 1B (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009446 [exp] 880 / 0 AT2G29680 584 / 0.0 cell division control 6 (.1.2) Lus10000427 [exp] 193 / 1e-55 AT1G07270 150 / 1e-39 Cell division control, Cdc6 (.1) Lus10031848 [exp] 122 / 4e-29 AT4G14700 942 / 0.0 origin recognition complex 1 (.1) Lus10031846 [exp] 120 / 1e-28 AT4G14700 943 / 0.0 origin recognition complex 1 (.1) Lus10031279 [exp] 118 / 5e-28 AT4G14700 1015 / 0.0 origin recognition complex 1 (.1) Lus10000556 [exp] 92 / 6e-20 AT1G08630 536 / 0.0 threonine aldolase 1 (.1.2.3.4.5) Lus10014658 [exp] 83 / 7e-17 AT1G08630 534 / 0.0 threonine aldolase 1 (.1.2.3.4.5) Lus10013372 [exp] 51 / 2e-06 AT5G22010 1128 / 0.0 replication factor C 1, replication factor C1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G250200 [exp] 666 / 0 AT1G07270 626 / 0.0 Cell division control, Cdc6 (.1) Potri.009G054300 [exp] 131 / 3e-32 AT4G14700 1015 / 0.0 origin recognition complex 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF09079 [flax] [poplar] Cdc6_C CDC6, C terminal winged helix domain CL0023 [flax] [poplar] P-loop_NTPase PF00004 [flax] [poplar] AAA ATPase family associated with various cellular activities (AAA)
Representative CDS sequence Show only first row Show all	>Lus10011627 pacid=23150932 polypeptide=Lus10011627 locus=Lus10011627.g ID=Lus10011627.BGIv1.0 annot-version=v1.0 ATGCCATCTCTTGCAGTCCTCACCGTTTCTCAATCCGGAGAAGAATCGTTAACCACGCCTCAGAAGCGGAGGCTGAGATCCAACTCCACTTCGGCGGCGG CGGAGACTCCGATCTGTCTCCCGACGAAGTGGAAGTCTCCTCGCCGATGCATCGATTCCAGTCCCCACGCGAGTGCAACAAGGAACGATCTGATTGAAGC GATAGAATCGATAGAGAAGGTGAGGATATCGCTCGTTGAAGGATTATCCAGCGACGTTAACGAGAGTCCGAGTTGGAATCCTAGAGATACGGCTCAAATG AGTGCGGTTAAGGAAGCTTTGCATGTATCGATGGCTCCAGCCACGGTTGTGTGCCGAGAAAATGAACAGAGTACAGTGTTTGATTTCTGCACGGAGTGTG TGGAGAAGAAACAGTCTGGGAGTTTGTATGTCTGTGGATGCCCTGGGACTGGGAAGTCTTTGTCGGTGGAGAAGGTGTCTAGTCAGCTGATTCAATGGGC TAGAGATGGTGGTGTTCAGTCTCCAGAAGTATTGTCCATTAACTGTACTGCACTTACGAGCTCTTCTCAGATTTTCAGCAAGATATTTGATAAGGTCTCT ATGAAAACAAAGATCAATGGTACTACCACACCATTGCAACATCTCCACAAATTGTATTCTCAACCTCAGCAGTTGAAAATGCTGCTGATAATAGCTGATG AATTGGATTATCTGATAACAAAAGACCGAGCTGTCCTTCATGATATGTTCATGCTTACAACTTTGCCTTTCTCTAGATGTATATTGATAGGTATAGCCAA TGCCATAGACTTAGCAGATCGTTTTCTTCCAAAGCTCCAGTCATTGAACTGTAAACCCTTGGTTATTACATTCAAAGCTTATTCCGAAGATCAAATACTC AGAATCCTTCAAGAGAGGCTCATGACACTATCCCATGTAGTTTTCAACCCACAAGCTTTGGAGCTATGTGCCAGAAAAGTTGCTGCTACATCCGGAGACA TGAGGAAAGCTCTTTCCGTCTGTAGGACAGCAGTCGAGATTCTGGAAACAGAACTTAGAGACTCCACCGATAACATGAGCCCATCTCCTTTACTTGACAA GCAAGAAAAGTCAGTTGTGAAGGTTGATCACATGGCGGCTGCTATATCAAAAGCATTTTCATCGCCATTAGTGGACACAATTCAATCACTTCCTCATCAT CAACAAATAATCCTCTGTTCAGCAGTCAAGTTCTTCCGTGGAGGAAAGAAAGACACCATAGTAGGAGAGCTGAACAAATCCTACGTGGAGACTTGCAAGT CACGAAAGATCCCACCAGTAGCCATTTCAGAATTCTTGAGTATGTGCAGAGTGCTTCATGACCAGGGGCTAGTGAAGCTTGGACAATCTCGCGGGGATGA CAAATTGAAGAGGATAACACTAACGGTAGACCAAGCTGATATCTCCTTCGCTTTGCAGGCAGTCCGTTTCTTTCGAAACTGTCTCGAGCAGTAA
AA sequence Show only first row Show all	>Lus10011627 pacid=23150932 polypeptide=Lus10011627 locus=Lus10011627.g ID=Lus10011627.BGIv1.0 annot-version=v1.0 MPSLAVLTVSQSGEESLTTPQKRRLRSNSTSAAAETPICLPTKWKSPRRCIDSSPHASATRNDLIEAIESIEKVRISLVEGLSSDVNESPSWNPRDTAQM SAVKEALHVSMAPATVVCRENEQSTVFDFCTECVEKKQSGSLYVCGCPGTGKSLSVEKVSSQLIQWARDGGVQSPEVLSINCTALTSSSQIFSKIFDKVS MKTKINGTTTPLQHLHKLYSQPQQLKMLLIIADELDYLITKDRAVLHDMFMLTTLPFSRCILIGIANAIDLADRFLPKLQSLNCKPLVITFKAYSEDQIL RILQERLMTLSHVVFNPQALELCARKVAATSGDMRKALSVCRTAVEILETELRDSTDNMSPSPLLDKQEKSVVKVDHMAAAISKAFSSPLVDTIQSLPHH QQIILCSAVKFFRGGKKDTIVGELNKSYVETCKSRKIPPVAISEFLSMCRVLHDQGLVKLGQSRGDDKLKRITLTVDQADISFALQAVRFFRNCLEQ

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G29680		CDC6, ATCDC6	cell division control 6 (.1.2)		Lus10011627 [exp]	0	1
AT3G27640			Transducin/WD40 repeat-like su...		Lus10032126 [exp]	9.2	0.8772
AT5G47770		FPS1	farnesyl diphosphate synthase ...		Lus10041057 [exp]	11.2	0.7953
AT2G36010	E2F_DP	ATE2FA, E2F3	E2F transcription factor 3 (.1...		Lus10029421 [exp]	11.3	0.8431
AT2G34040			Apoptosis inhibitory protein 5...		Lus10013953 [exp]	11.7	0.8404
AT5G63770		ATDGK2	diacylglycerol kinase 2 (.1.2)		Lus10012719 [exp]	12.0	0.8311
AT2G38460		FPN1, ATIREG1	FERROPORTIN 1, ARABIDOPSIS THA...		Lus10001263 [exp]	14.0	0.7450
AT5G52800			DNA primases (.1.2.3)		Lus10038837 [exp]	14.7	0.8499
AT4G21530		APC4	anaphase promoting complex 4, ...		Lus10018436 [exp]	20.0	0.8344
AT2G20980		MCM10	minichromosome maintenance 10 ...		Lus10019785 [exp]	22.2	0.8355
AT1G01690		ATPRD3	ARABIDOPSIS THALIANA PUTATIVE ...		Lus10014774 [exp]	23.7	0.7236

Compare expression of checked genes

Lus10011627 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.