Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42630 131 / 1e-36 GARP KAN4, KANADI4, ATS KANADI 4, ABERRANT TESTA SHAPE, Homeodomain-like superfamily protein (.1.2) AT4G17695 119 / 2e-31 GARP KAN3, KANADI3 KANADI 3, Homeodomain-like superfamily protein (.1) AT1G32240 115 / 9e-30 GARP KAN2, KANADI2 KANADI 2, Homeodomain-like superfamily protein (.1) AT5G16560 111 / 4e-28 GARP KAN1, KAN KANADI 1, KANADI, Homeodomain-like superfamily protein (.1) AT2G42660 81 / 6e-18 GARP Homeodomain-like superfamily protein (.1) AT2G38300 80 / 5e-17 GARP myb-like HTH transcriptional regulator family protein (.1) AT2G02060 79 / 5e-17 GARP Homeodomain-like superfamily protein (.1) AT1G14600 78 / 7e-17 GARP Homeodomain-like superfamily protein (.1) AT2G40260 79 / 1e-16 GARP Homeodomain-like superfamily protein (.1) AT4G28610 77 / 9e-16 GARP ATPHR1, PHR1 phosphate starvation response 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032746 [exp] 296 / 4e-100 AT5G42630 194 / 3e-60 KANADI 4, ABERRANT TESTA SHAPE, Homeodomain-like superfamily protein (.1.2) Lus10035387 [exp] 112 / 3e-30 AT1G32240 222 / 1e-71 KANADI 2, Homeodomain-like superfamily protein (.1) Lus10030989 [exp] 114 / 8e-29 AT1G32240 229 / 6e-71 KANADI 2, Homeodomain-like superfamily protein (.1) Lus10002207 [exp] 82 / 9e-18 AT2G38300 171 / 9e-51 myb-like HTH transcriptional regulator family protein (.1) Lus10012239 [exp] 82 / 1e-17 AT2G38300 170 / 3e-50 myb-like HTH transcriptional regulator family protein (.1) Lus10040945 [exp] 81 / 2e-17 AT2G40260 159 / 2e-45 Homeodomain-like superfamily protein (.1) Lus10007513 [exp] 81 / 2e-17 AT2G40260 145 / 3e-40 Homeodomain-like superfamily protein (.1) Lus10029225 [exp] 78 / 3e-17 AT2G38300 110 / 5e-30 myb-like HTH transcriptional regulator family protein (.1) Lus10008197 [exp] 81 / 5e-17 AT5G29000 318 / 3e-105 PHR1-like 1, Homeodomain-like superfamily protein (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G037200 [exp] 139 / 4e-39 AT5G42630 209 / 6e-66 KANADI 4, ABERRANT TESTA SHAPE, Homeodomain-like superfamily protein (.1.2) Potri.002G130200 [exp] 132 / 3e-36 AT5G42630 199 / 6e-62 KANADI 4, ABERRANT TESTA SHAPE, Homeodomain-like superfamily protein (.1.2) Potri.017G137600 [exp] 117 / 8e-30 AT5G16560 256 / 8e-81 KANADI 1, KANADI, Homeodomain-like superfamily protein (.1) Potri.003G096300 [exp] 115 / 8e-30 AT1G32240 224 / 1e-69 KANADI 2, Homeodomain-like superfamily protein (.1) Potri.004G082400 [exp] 114 / 5e-29 AT5G16560 233 / 7e-72 KANADI 1, KANADI, Homeodomain-like superfamily protein (.1) Potri.012G042100 [exp] 112 / 3e-28 AT5G16560 193 / 6e-57 KANADI 1, KANADI, Homeodomain-like superfamily protein (.1) Potri.015G031600 [exp] 111 / 6e-28 AT5G16560 176 / 1e-50 KANADI 1, KANADI, Homeodomain-like superfamily protein (.1) Potri.001G137600 [exp] 107 / 1e-26 AT1G32240 216 / 6e-67 KANADI 2, Homeodomain-like superfamily protein (.1) Potri.008G071700 [exp] 87 / 2e-19 AT2G40260 166 / 2e-47 Homeodomain-like superfamily protein (.1) Potri.009G075100 [exp] 85 / 7e-19 AT2G38300 162 / 4e-47 myb-like HTH transcriptional regulator family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10011660 pacid=23149664 polypeptide=Lus10011660 locus=Lus10011660.g ID=Lus10011660.BGIv1.0 annot-version=v1.0 ATGAGGTGGACTACCACTCTCCATGCTCACTTTGTTCACGCCGTTCAGCTTCTTGGCGGCCATGAAAGAGCGACGCCCAAATCGGTTCTGGAGCTGATGA ACGTCAAAGATCTAACCCTTGCTCATGTCAAGAGCCATTTGCAGATGTATAGAACAGTGAAGAGCACTGACAAATCACCATTACCACCTGGTGGAGGAGG GCATGGATTGAGTCATAGTAGTGATGATGACAACATTAATAATTATGGAGAGGATGCCATTATTGATTTGGACGCAGCAAAAGAGGAAGAAGAAGAAGAA GAAGGAGATGGATACAGAAAATTATTAGCTGCTGATCATCAAACAGATTCTCCTCCTCAACCAACCATTACTCAAAATGTTCCGCGGTCATCATCCATTG ACAGAGACAGCAACAACATTAGATTATCACATCCATTGACTCATTCTCACAATAACGGGCATGACATAACTACAAAGGAGGAGAAGGGAGGAGAGCTGAG GTTGACAAGGACTTCAGAGATGTTGGTCAACCTAGAATTCACACTTGGAAGGCCAAGCTGGCAGAGGGATGACGTCAACTCTGTAGCTGAACCGTCCAAT TATGACTTGACCCTCCTCAAGTACCAAGTAAGCCCAAGGCGAGTCGACTTCACCAAAGCCCATCTCAGGCCTGCTCAACCTCATCAGCAACCACACCTGT CGCAGCCCGTTAACAAGCATGTCGAACCTAGCAATTACGCAGCAGCTTGGCAATCGAGGAAGCTTCGTGACGAGAAGATCAGAGATCGGAGGCAGTGCCT ATGCGAGAAGATCGATTGCCAGCAATGA
AA sequence Show only first row Show all	>Lus10011660 pacid=23149664 polypeptide=Lus10011660 locus=Lus10011660.g ID=Lus10011660.BGIv1.0 annot-version=v1.0 MRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKSTDKSPLPPGGGGHGLSHSSDDDNINNYGEDAIIDLDAAKEEEEEE EGDGYRKLLAADHQTDSPPQPTITQNVPRSSSIDRDSNNIRLSHPLTHSHNNGHDITTKEEKGGELRLTRTSEMLVNLEFTLGRPSWQRDDVNSVAEPSN YDLTLLKYQVSPRRVDFTKAHLRPAQPHQQPHLSQPVNKHVEPSNYAAAWQSRKLRDEKIRDRRQCLCEKIDCQQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G42630	GARP	KAN4, KANADI4, ...	KANADI 4, ABERRANT TESTA SHAPE...		Lus10011660 [exp]	0	1
AT3G26120		TEL1	terminal EAR1-like 1 (.1)		Lus10006234 [exp]	1.0	0.9026
AT1G80100		AHP6	histidine phosphotransfer prot...		Lus10011487 [exp]	1.4	0.8419
AT3G61650		TUBG1	gamma-tubulin (.1)		Lus10010985 [exp]	1.7	0.8314
AT1G72020			unknown protein		Lus10009443 [exp]	4.9	0.7586
AT3G51060		SRS1, STY1	STYLISH 1, SHI RELATED SEQUENC...		Lus10041803 [exp]	5.5	0.8159
AT1G24430			HXXXD-type acyl-transferase fa...		Lus10037956 [exp]	5.7	0.8285
AT5G65520			Tetratricopeptide repeat (TPR)...		Lus10025714 [exp]	6.9	0.7982
AT3G16300			Uncharacterised protein family...		Lus10038271 [exp]	8.3	0.7366
AT1G72020			unknown protein		Lus10006080 [exp]	13.4	0.7515
AT4G00850		GIF3	GRF1-interacting factor 3 (.1)		Lus10032892 [exp]	16.2	0.7853

Compare expression of checked genes

Lus10011660 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.