Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G47670 877 / 0 Transmembrane amino acid transporter family protein (.1) AT4G35180 353 / 5e-117 LHT7 LYS/HIS transporter 7 (.1) AT1G24400 303 / 4e-98 ATLHT2, AATL2, LHT2 ARABIDOPSIS LYSINE HISTIDINE TRANSPORTER 2, AMINO ACID TRANSPORTER-LIKE PROTEIN 2, lysine histidine transporter 2 (.1) AT5G40780 288 / 4e-92 LHT1, LTH1 lysine histidine transporter 1 (.1.2) AT1G67640 283 / 6e-90 Transmembrane amino acid transporter family protein (.1) AT1G61270 276 / 3e-87 Transmembrane amino acid transporter family protein (.1) AT1G48640 276 / 3e-87 Transmembrane amino acid transporter family protein (.1) AT1G25530 275 / 3e-87 Transmembrane amino acid transporter family protein (.1) AT3G01760 258 / 2e-80 Transmembrane amino acid transporter family protein (.1) AT1G71680 234 / 2e-71 Transmembrane amino acid transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032751 [exp] 971 / 0 AT1G47670 922 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10003338 [exp] 541 / 0 AT1G47670 565 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10025113 [exp] 529 / 0 AT1G47670 529 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10023971 [exp] 528 / 0 AT1G47670 526 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10015997 [exp] 427 / 1e-145 AT1G47670 450 / 2e-154 Transmembrane amino acid transporter family protein (.1) Lus10022642 [exp] 395 / 3e-133 AT4G35180 431 / 7e-148 LYS/HIS transporter 7 (.1) Lus10003339 [exp] 389 / 1e-130 AT1G47670 410 / 9e-140 Transmembrane amino acid transporter family protein (.1) Lus10022329 [exp] 315 / 3e-102 AT5G40780 798 / 0.0 lysine histidine transporter 1 (.1.2) Lus10041581 [exp] 314 / 4e-102 AT5G40780 798 / 0.0 lysine histidine transporter 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G036500 [exp] 931 / 0 AT1G47670 922 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.002G012900 [exp] 593 / 0 AT1G47670 577 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.004G181200 [exp] 523 / 0 AT1G47670 504 / 3e-175 Transmembrane amino acid transporter family protein (.1) Potri.009G140800 [exp] 505 / 1e-175 AT1G47670 509 / 6e-177 Transmembrane amino acid transporter family protein (.1) Potri.004G181100 [exp] 463 / 2e-159 AT1G47670 384 / 2e-128 Transmembrane amino acid transporter family protein (.1) Potri.004G181000 [exp] 452 / 4e-156 AT1G47670 405 / 5e-138 Transmembrane amino acid transporter family protein (.1) Potri.001G335300 [exp] 309 / 5e-100 AT5G40780 752 / 0.0 lysine histidine transporter 1 (.1.2) Potri.010G128300 [exp] 297 / 1e-95 AT1G25530 687 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.008G118000 [exp] 288 / 2e-92 AT1G25530 677 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.008G179000 [exp] 287 / 9e-92 AT1G24400 654 / 0.0 ARABIDOPSIS LYSINE HISTIDINE TRANSPORTER 2, AMINO ACID TRANSPORTER-LIKE PROTEIN 2, lysine histidine transporter 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF01490 [flax] [poplar] Aa_trans Transmembrane amino acid transporter protein
Representative CDS sequence Show only first row Show all	>Lus10011668 pacid=23149651 polypeptide=Lus10011668 locus=Lus10011668.g ID=Lus10011668.BGIv1.0 annot-version=v1.0 ATGGAGGAGAGGCCAGAAACTGAGCTGATATCTATCCCGGCGACTCCACGCGCGTCCACGCCGGAGATACTGACGCCGTCGGGACAGAGGTCTCCCGGGA GGCCGCCGTCCAAGGATACCAAGTCGTCAAATGCGTGGACTCCGACGTCGTTCATCTCGCCTAGGTTCCTGAGTCCGATAGGGACTCCGATGAAGAGGGT GCTGGTTAACATGAAGGGGTACTTGGAGGAAGTTGGGCATCTGACGAAGCTCAACCCTCAAGACGCTTGGCTGCCCATTACAGAGTCCAGAAACGGGAAT GCTCACTACGCTGCTTTTCATAACCTCAATGCCGGCGTCGGCTTCCAGGCACTCGTTTTGCCTGTCGCTTTCGCTTACCTTGGCTGGGGCTGGGGAATAC TGTCCTTAACGATAGCCTATTGCTGGCAGCTTTACACTCTATGGATACTAGTCCAGTTACACGAAGCAGTTCCAGGGAAGAGATACAACCGATACGTGGA ACTTGCACAAGCTGCATTTGGGGAAAAATTGGGTCCTTGGCTTGCAGTGTTCCCAACTGTATATTTATCAGCTGGAACTGCAACAGCATTGATAATCGTT GGAGGGGAGACCATGAAACTCTTCTTTCAGATAGTTTGTGGCCCACTATGTTCATCGGATCCCTTGACCACTGTGGAGTGGTATCTTGTGTTCACTTCTC TATGCATTGTTCTGTCACAGCTCCCAAACCTCAATTCAATAGCTGGACTTTCTCTGATTGGAGCCATAACAGCCATCACTTACTCAACAATGGTGTGGGT GCTCTCTGTGAGTGAGCAGAGGCCACCTTCAATCTCTTATGAACCTCTTTCTCTCCCATCTCCAACTGCATCCGTCTTCTCTGTTCTCAATGCCCTTGGA ATTGTAGCCTTTGCATTCAGAGGACACAATCTCGTTCTCGAGATTCAGTCAACAATGCCATCTACCTTCAAGCACCCAGCTCATGTTCCAATGTGGAGAG GAGCTAAGGTTGCATATTTCTTCATAGCGTTGTGCCTCTTCCCTGTAGCAATTGGTGGCTTCTGGGCTTATGGAAACCTTATGCCGTCAGGAGGGATTCT GAATGCACTTTATGGATTTCACAGCCACGACATTCCACGGGGGCTTCTTGCTATGACATGCCTTCTAGTTGTCTTCAACTGCTTAAGCAGTTTCCAGATA TACTCAATGCCTGTCTTCGACAGCTTCGAAGCGAGTTACACCAGCCGCACAAACCGTCCATGCTCGATATGGGTTCGGTCAGGATTCCGAGTGTTCTACG GGTTTGTCAACTTCTTCATAGGCGTGGCACTCCCTTTCCTGTCCAGTCTTGCTGGTCTGCTTGGAGGATTGACACTCCCAGTCACATTTGCATACCCTTG CTTCATGTGGGTTCTGATAAAAAAGCCTTCAAAGTACAGCTTCAACTGGTACTTCAATTGGATCCTGGGTTGGCTTGGGATTGCATTCAGCTTGGCCTTC ACCATTGGTGGTGTGTGGAGCATGGTCAACAGTGGACTCAAGTTGAAGTTTTTCAAGCCTAATTAA
AA sequence Show only first row Show all	>Lus10011668 pacid=23149651 polypeptide=Lus10011668 locus=Lus10011668.g ID=Lus10011668.BGIv1.0 annot-version=v1.0 MEERPETELISIPATPRASTPEILTPSGQRSPGRPPSKDTKSSNAWTPTSFISPRFLSPIGTPMKRVLVNMKGYLEEVGHLTKLNPQDAWLPITESRNGN AHYAAFHNLNAGVGFQALVLPVAFAYLGWGWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFGEKLGPWLAVFPTVYLSAGTATALIIV GGETMKLFFQIVCGPLCSSDPLTTVEWYLVFTSLCIVLSQLPNLNSIAGLSLIGAITAITYSTMVWVLSVSEQRPPSISYEPLSLPSPTASVFSVLNALG IVAFAFRGHNLVLEIQSTMPSTFKHPAHVPMWRGAKVAYFFIALCLFPVAIGGFWAYGNLMPSGGILNALYGFHSHDIPRGLLAMTCLLVVFNCLSSFQI YSMPVFDSFEASYTSRTNRPCSIWVRSGFRVFYGFVNFFIGVALPFLSSLAGLLGGLTLPVTFAYPCFMWVLIKKPSKYSFNWYFNWILGWLGIAFSLAF TIGGVWSMVNSGLKLKFFKPN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G47670			Transmembrane amino acid trans...		Lus10011668 [exp]	0	1
AT1G47670			Transmembrane amino acid trans...		Lus10032751 [exp]	1.0	0.9077
AT3G24660		TMKL1	transmembrane kinase-like 1 (....		Lus10022818 [exp]	2.0	0.8850
AT3G50660		PSC1, CYP90B1, ...	SUPPRESSOR OF NPH4 2, SHADE AV...		Lus10024016 [exp]	6.5	0.8499
AT3G24660		TMKL1	transmembrane kinase-like 1 (....		Lus10011886 [exp]	7.1	0.8524
					Lus10034518 [exp]	10.8	0.7635
AT3G57890			Tubulin binding cofactor C dom...		Lus10016279 [exp]	11.5	0.8298
AT2G01820		CYCJ18	Leucine-rich repeat protein ki...		Lus10013342 [exp]	11.9	0.8628
AT1G31320	AS2	LBD4	LOB domain-containing protein ...		Lus10040638 [exp]	14.1	0.8060
AT3G16060			ATP binding microtubule motor ...		Lus10011449 [exp]	14.3	0.8612
AT1G38065			O-fucosyltransferase family pr...		Lus10028080 [exp]	15.5	0.8335

Compare expression of checked genes

Lus10011668 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.