Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65205 240 / 1e-78 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G10050 239 / 2e-78 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G03330 81 / 1e-17 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G55310 79 / 1e-16 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G47360 79 / 1e-16 ATHSD3 hydroxysteroid dehydrogenase 3 (.1) AT2G17845 77 / 3e-16 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G47350 76 / 2e-15 ATHSD2 hydroxysteroid dehydrogenase 2 (.1.2) AT3G55290 74 / 3e-15 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT3G29260 73 / 5e-15 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G24360 74 / 6e-15 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004925 [exp] 236 / 4e-77 AT5G10050 410 / 5e-146 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016430 [exp] 209 / 7e-67 AT5G10050 323 / 8e-112 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016429 [exp] 207 / 6e-66 AT5G10050 349 / 1e-121 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10019683 [exp] 199 / 9e-63 AT5G10050 315 / 3e-108 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10019684 [exp] 194 / 6e-61 AT5G10050 355 / 3e-124 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10040878 [exp] 166 / 5e-50 AT5G65205 308 / 9e-106 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10021318 [exp] 87 / 5e-20 AT3G51680 238 / 9e-78 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016995 [exp] 87 / 1e-19 AT3G51680 243 / 7e-80 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016991 [exp] 87 / 1e-19 AT2G47140 238 / 2e-78 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G007300 [exp] 431 / 1e-153 AT5G10050 210 / 6e-67 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.007G086600 [exp] 245 / 5e-80 AT5G10050 416 / 2e-147 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.005G080900 [exp] 220 / 1e-70 AT5G10050 379 / 2e-133 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G074000 [exp] 83 / 2e-18 AT1G52340 246 / 5e-81 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G207100 [exp] 83 / 2e-18 AT4G03140 241 / 2e-78 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.008G178700 [exp] 82 / 6e-18 AT1G24360 385 / 1e-134 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.010G056100 [exp] 82 / 1e-17 AT1G24360 421 / 6e-149 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.012G101900 [exp] 79 / 8e-17 AT5G50690 287 / 9e-97 hydroxysteroid dehydrogenase 7 (.1) Potri.014G135510 [exp] 78 / 2e-16 AT4G03140 400 / 8e-141 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.005G106100 [exp] 77 / 2e-16 AT2G47140 234 / 9e-77 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00106 [flax] [poplar] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10011729 pacid=23145626 polypeptide=Lus10011729 locus=Lus10011729.g ID=Lus10011729.BGIv1.0 annot-version=v1.0 ATGGATGAGCCTAAAGTAGTTCTAGTCACTGGATGCGGCAAAGGTGGTATTGGGTTTGAGTACTGCAAAGCATTCTCCCACCAAAACTGCCGTGTCATTG CCACTGACATCCCTAATCGTGTGGGTGACATGGCGGAGCTCAAAGAATCTGACAATATCGAGGCATTGGGGATCGATGTCTCATCGGACGAGAGCGTGTC ATCGACCATAAAGGATATCATTGCTAAGTACGGTCACATAGACGTCTTGGTCAACAATGCTGGGATTGGTAGCACAGGGCCTCTAAGCGAGCTACCTTTG GACGTGATTCGAAAGACATGGGAGATCAACACACTGGGGCAGCTGAGGATGGTGCAGAGCGTGGTTCCTCACATGGCCTCTCGTCGAAAGGGAACGATTG TCAACATAGGGAGTGTGGTGGGGAAAGTTCCAACGCCATGGGCAGGGTCTTATTGTGCTAGTAAAGCTTATGTTCATGCCATGTCACATACTCTAAGAGT GGAATTGAGGCCATTTGGTATAAATGTGGTGCTTGTTATGCCTGGATCTATAAAGTCCAATCTTGGCAAGGCTAACATGGAGAAATTGCAAGGCATTGAT CATGACTGGAAGATTTATAAGGATTTCAAAGAAGCCATAGCGGAAAGAGCAAGGGCGTCACAGGGGCCGAAAGCAACGGACGCATCAGTTTTGGCTAAGG AAGTGGCCAAGAAGGTTTTGATGATTCCTAAACCACCAAAGCTGATAACTTTGGGTCATATGACTGGCTTGTTTGCTGTTCTCTCTGCTTCCCCTTTGTG GGTTAGAGACCTCTTCTTCTCGAAGCGATTTGGTCTAAACAAGAAAGTTTGA
AA sequence Show only first row Show all	>Lus10011729 pacid=23145626 polypeptide=Lus10011729 locus=Lus10011729.g ID=Lus10011729.BGIv1.0 annot-version=v1.0 MDEPKVVLVTGCGKGGIGFEYCKAFSHQNCRVIATDIPNRVGDMAELKESDNIEALGIDVSSDESVSSTIKDIIAKYGHIDVLVNNAGIGSTGPLSELPL DVIRKTWEINTLGQLRMVQSVVPHMASRRKGTIVNIGSVVGKVPTPWAGSYCASKAYVHAMSHTLRVELRPFGINVVLVMPGSIKSNLGKANMEKLQGID HDWKIYKDFKEAIAERARASQGPKATDASVLAKEVAKKVLMIPKPPKLITLGHMTGLFAVLSASPLWVRDLFFSKRFGLNKKV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G65205			NAD(P)-binding Rossmann-fold s...		Lus10011729 [exp]	0	1
AT5G19580			glyoxal oxidase-related protei...		Lus10043230 [exp]	6.3	0.7981
					Lus10000400 [exp]	8.5	0.7971
AT3G05950			RmlC-like cupins superfamily p...		Lus10030047 [exp]	9.5	0.6618
AT4G16295		SPH1	S-protein homologue 1 (.1)		Lus10029390 [exp]	10.4	0.7971
AT1G69040		ACR4	ACT domain repeat 4 (.1.2)		Lus10036827 [exp]	10.6	0.7384
AT3G02360			6-phosphogluconate dehydrogena...		Lus10029098 [exp]	11.5	0.7233
AT5G33340		CDR1	CONSTITUTIVE DISEASE RESISTANC...		Lus10029913 [exp]	12.0	0.7971
AT2G29110		ATGLR2.8	glutamate receptor 2.8 (.1)		Lus10026877 [exp]	13.4	0.7971
AT5G18460			Protein of Unknown Function (D...		Lus10006860 [exp]	14.7	0.7971
AT4G10020		ATHSD5	hydroxysteroid dehydrogenase 5...		Lus10006178 [exp]	14.7	0.7130

Compare expression of checked genes

Lus10011729 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.