Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37750 210 / 1e-62 AP2_ERF DRG, CKC1, ANT DRAGON, COMPLEMENTING A PROTEIN KINASE C MUTANT 1, AINTEGUMENTA, Integrase-type DNA-binding superfamily protein (.1) AT1G72570 190 / 4e-56 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT1G51190 181 / 1e-51 AP2_ERF PLT2 PLETHORA 2, Integrase-type DNA-binding superfamily protein (.1) AT3G20840 180 / 4e-51 AP2_ERF PLT1 PLETHORA 1, Integrase-type DNA-binding superfamily protein (.1) AT5G17430 179 / 1e-50 AP2_ERF BBM BABY BOOM, Integrase-type DNA-binding superfamily protein (.1) AT5G57390 177 / 5e-50 AP2_ERF PLT5, EMK, CHO1, AIL5 PLETHORA 5, EMBRYOMAKER, CHOTTO 1, AINTEGUMENTA-like 5 (.1) AT5G10510 175 / 4e-49 AP2_ERF PLT3, AIL6 PLETHORA 3, AINTEGUMENTA-like 6 (.1.2.3) AT5G65510 167 / 8e-47 AP2_ERF PLT7, AIL7 PLETHORA 7, AINTEGUMENTA-like 7 (.1) AT3G54320 128 / 5e-33 AP2_ERF ATWRI1, ASML1, WRI1 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3) AT2G41710 124 / 1e-31 AP2_ERF Integrase-type DNA-binding superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039650 [exp] 526 / 0 AT4G37750 266 / 1e-80 DRAGON, COMPLEMENTING A PROTEIN KINASE C MUTANT 1, AINTEGUMENTA, Integrase-type DNA-binding superfamily protein (.1) Lus10007719 [exp] 230 / 5e-70 AT4G37750 429 / 1e-144 DRAGON, COMPLEMENTING A PROTEIN KINASE C MUTANT 1, AINTEGUMENTA, Integrase-type DNA-binding superfamily protein (.1) Lus10018655 [exp] 228 / 5e-69 AT4G37750 430 / 9e-145 DRAGON, COMPLEMENTING A PROTEIN KINASE C MUTANT 1, AINTEGUMENTA, Integrase-type DNA-binding superfamily protein (.1) Lus10037670 [exp] 192 / 7e-58 AT1G72570 355 / 1e-120 Integrase-type DNA-binding superfamily protein (.1) Lus10031831 [exp] 182 / 6e-53 AT3G20840 580 / 0.0 PLETHORA 1, Integrase-type DNA-binding superfamily protein (.1) Lus10031260 [exp] 180 / 5e-51 AT1G51190 667 / 0.0 PLETHORA 2, Integrase-type DNA-binding superfamily protein (.1) Lus10012728 [exp] 175 / 2e-49 AT5G10510 495 / 1e-170 PLETHORA 3, AINTEGUMENTA-like 6 (.1.2.3) Lus10002657 [exp] 161 / 2e-44 AT5G10510 467 / 5e-160 PLETHORA 3, AINTEGUMENTA-like 6 (.1.2.3) Lus10008939 [exp] 141 / 3e-37 AT3G54320 303 / 2e-98 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G114800 [exp] 238 / 2e-72 AT4G37750 459 / 5e-155 DRAGON, COMPLEMENTING A PROTEIN KINASE C MUTANT 1, AINTEGUMENTA, Integrase-type DNA-binding superfamily protein (.1) Potri.005G148400 [exp] 238 / 4e-72 AT4G37750 399 / 7e-132 DRAGON, COMPLEMENTING A PROTEIN KINASE C MUTANT 1, AINTEGUMENTA, Integrase-type DNA-binding superfamily protein (.1) Potri.014G012200 [exp] 236 / 4e-71 AT4G37750 405 / 8e-134 DRAGON, COMPLEMENTING A PROTEIN KINASE C MUTANT 1, AINTEGUMENTA, Integrase-type DNA-binding superfamily protein (.1) Potri.007G007400 [exp] 234 / 1e-70 AT4G37750 412 / 9e-137 DRAGON, COMPLEMENTING A PROTEIN KINASE C MUTANT 1, AINTEGUMENTA, Integrase-type DNA-binding superfamily protein (.1) Potri.001G169500 [exp] 192 / 5e-56 AT1G72570 389 / 2e-131 Integrase-type DNA-binding superfamily protein (.1) Potri.001G018400 [exp] 182 / 3e-52 AT1G51190 639 / 0.0 PLETHORA 2, Integrase-type DNA-binding superfamily protein (.1) Potri.003G205700 [exp] 182 / 4e-52 AT1G51190 635 / 0.0 PLETHORA 2, Integrase-type DNA-binding superfamily protein (.1) Potri.008G076400 [exp] 183 / 2e-51 AT5G17430 405 / 4e-133 BABY BOOM, Integrase-type DNA-binding superfamily protein (.1) Potri.010G181000 [exp] 182 / 5e-51 AT5G17430 399 / 2e-130 BABY BOOM, Integrase-type DNA-binding superfamily protein (.1) Potri.018G091600 [exp] 179 / 6e-51 AT5G57390 422 / 9e-142 PLETHORA 5, EMBRYOMAKER, CHOTTO 1, AINTEGUMENTA-like 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF00847 [flax] [poplar] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Lus10011730 pacid=23145624 polypeptide=Lus10011730 locus=Lus10011730.g ID=Lus10011730.BGIv1.0 annot-version=v1.0 ATGAAGTCCATGAACAATGATGATGAAAACAACAACAACAACAACAACAACACCAACTGGTTAGGATTCTCTCTTGCTCCTGATCATCACAACCATCATT TCAAAATGGCAGATGTAATTCCTACTACTACCTCTACTACTACAAGTGCTGCTGCTACTATGCCCTCAAGTTTCTTCAATCTTACCACCAGCTATGCCAC TAATTCCTCCTCCTCCCCTTCTTCTCACTATGTTCATCCTCAAAATGGTGGTGCTTCCTTCTTCTCTTCCCAAATGTTGCCACTTAAATCTGATGGTTCC CTCTGTATCACGCAAGCTCTCACCACCTCACACCCTTCTCATGACAACAACACTAGCAATAACGACATGATGTACCATATGCATCATCAGCATCAGCTTC AGCAGCAATTCTACCATGCTTACAGTTTCAATCACATTGAAGCAGCAGCCAACAAAGAGTTACAACAGATTGAGGGTGATGATGATGATGCTGCCATTGT CAAGAGTTGGATTTCAAGGAATTATGGGATGGTGGAGCAGCAGAGTAACAATAATAATGCAGATGAAATTGAATCAGCAGCTGGTGGTTGTGGCTCTATG AACGCAGCGATGGTGGCATATGGAGATTTGCAGTCATTAAGCTTGTCAATGAGCTCTGGCTCTCAGTCAAGCTGTGTAAGTAGTGTTTCCCAAATCTCCA CACCTCTAGCAGAATGTGGAGTTATGGTGGTGGAGAACAAGAAAAGAGGGTGTGAGAAAGTGGATCAGAAGAAGCAGATTGTTCATAGGAAGTCCATTGA TACTTTTGGCCAAAGAACCTCTCAGTATAGAGGTGTCACCAGGCATAGGTGGACTGGGAGATATGAAGCACATTTGTGGGATAACAGTTGCAAGAAAGAA GGCCAGAGCAGAAAGGGAAGACAAGGTGGATATGACATGGAAGAGAAAGCTGCTAGATCTTACGATCTAGCTGCTCTCAAGTATTGGGGAGCCTCAACTC ATATCAACTTCCCTTTGGAGAACTACCACAAGGAGCTTGATGAAATGAAGAACATGAGCAGACAGGAATATGTCGCTCATTTGAGAAGGCAAGAACTCCC CTTACCCACCATCACATCAGTTGTCCATTTGAGAATATTTATTTCTAAACTTGAAGTTCCATATTTGCAGGAAAAGTAG
AA sequence Show only first row Show all	>Lus10011730 pacid=23145624 polypeptide=Lus10011730 locus=Lus10011730.g ID=Lus10011730.BGIv1.0 annot-version=v1.0 MKSMNNDDENNNNNNNNTNWLGFSLAPDHHNHHFKMADVIPTTTSTTTSAAATMPSSFFNLTTSYATNSSSSPSSHYVHPQNGGASFFSSQMLPLKSDGS LCITQALTTSHPSHDNNTSNNDMMYHMHHQHQLQQQFYHAYSFNHIEAAANKELQQIEGDDDDAAIVKSWISRNYGMVEQQSNNNNADEIESAAGGCGSM NAAMVAYGDLQSLSLSMSSGSQSSCVSSVSQISTPLAECGVMVVENKKRGCEKVDQKKQIVHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKE GQSRKGRQGGYDMEEKAARSYDLAALKYWGASTHINFPLENYHKELDEMKNMSRQEYVAHLRRQELPLPTITSVVHLRIFISKLEVPYLQEK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G37750	AP2_ERF	DRG, CKC1, ANT	DRAGON, COMPLEMENTING A PROTEI...		Lus10011730 [exp]	0	1
AT4G37750	AP2_ERF	DRG, CKC1, ANT	DRAGON, COMPLEMENTING A PROTEI...		Lus10039650 [exp]	1.0	0.9618
AT5G62960			unknown protein		Lus10002386 [exp]	4.1	0.9160
AT1G67040			unknown protein		Lus10017607 [exp]	4.2	0.9404
AT4G39790			Protein of unknown function (D...		Lus10041710 [exp]	6.0	0.9399
AT2G05760			Xanthine/uracil permease famil...		Lus10030014 [exp]	9.8	0.9322
AT2G28490			RmlC-like cupins superfamily p...		Lus10011364 [exp]	10.0	0.9398
AT1G79180	MYB	ATMYB63	myb domain protein 63 (.1)		Lus10018518 [exp]	11.0	0.9385
AT1G67040			unknown protein		Lus10033565 [exp]	12.4	0.9350
AT2G19930			RNA-dependent RNA polymerase f...		Lus10012965 [exp]	13.9	0.8826
AT5G58610			PHD finger transcription facto...		Lus10012522 [exp]	15.5	0.8749

Compare expression of checked genes

Lus10011730 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.