Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37750 155 / 3e-44 AP2_ERF DRG, CKC1, ANT DRAGON, COMPLEMENTING A PROTEIN KINASE C MUTANT 1, AINTEGUMENTA, Integrase-type DNA-binding superfamily protein (.1) AT1G72570 148 / 3e-42 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT5G57390 145 / 2e-40 AP2_ERF PLT5, EMK, CHO1, AIL5 PLETHORA 5, EMBRYOMAKER, CHOTTO 1, AINTEGUMENTA-like 5 (.1) AT1G51190 145 / 2e-40 AP2_ERF PLT2 PLETHORA 2, Integrase-type DNA-binding superfamily protein (.1) AT3G20840 143 / 2e-39 AP2_ERF PLT1 PLETHORA 1, Integrase-type DNA-binding superfamily protein (.1) AT5G17430 134 / 2e-36 AP2_ERF BBM BABY BOOM, Integrase-type DNA-binding superfamily protein (.1) AT5G10510 108 / 4e-27 AP2_ERF PLT3, AIL6 PLETHORA 3, AINTEGUMENTA-like 6 (.1.2.3) AT5G65510 107 / 1e-26 AP2_ERF PLT7, AIL7 PLETHORA 7, AINTEGUMENTA-like 7 (.1) AT1G16060 91 / 7e-22 AP2_ERF ADAP ARIA-interacting double AP2 domain protein (.1.2) AT1G79700 91 / 1e-21 AP2_ERF Integrase-type DNA-binding superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039650 [exp] 162 / 3e-46 AT4G37750 266 / 1e-80 DRAGON, COMPLEMENTING A PROTEIN KINASE C MUTANT 1, AINTEGUMENTA, Integrase-type DNA-binding superfamily protein (.1) Lus10015653 [exp] 150 / 3e-45 AT1G72570 210 / 1e-67 Integrase-type DNA-binding superfamily protein (.1) Lus10007719 [exp] 158 / 4e-45 AT4G37750 429 / 1e-144 DRAGON, COMPLEMENTING A PROTEIN KINASE C MUTANT 1, AINTEGUMENTA, Integrase-type DNA-binding superfamily protein (.1) Lus10018655 [exp] 157 / 1e-44 AT4G37750 430 / 9e-145 DRAGON, COMPLEMENTING A PROTEIN KINASE C MUTANT 1, AINTEGUMENTA, Integrase-type DNA-binding superfamily protein (.1) Lus10037670 [exp] 152 / 2e-44 AT1G72570 355 / 1e-120 Integrase-type DNA-binding superfamily protein (.1) Lus10031831 [exp] 146 / 2e-41 AT3G20840 580 / 0.0 PLETHORA 1, Integrase-type DNA-binding superfamily protein (.1) Lus10031260 [exp] 146 / 2e-40 AT1G51190 667 / 0.0 PLETHORA 2, Integrase-type DNA-binding superfamily protein (.1) Lus10001553 [exp] 109 / 4e-28 AT1G16060 331 / 3e-112 ARIA-interacting double AP2 domain protein (.1.2) Lus10041618 [exp] 109 / 5e-28 AT1G79700 310 / 1e-104 Integrase-type DNA-binding superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G007400 [exp] 198 / 2e-59 AT4G37750 412 / 9e-137 DRAGON, COMPLEMENTING A PROTEIN KINASE C MUTANT 1, AINTEGUMENTA, Integrase-type DNA-binding superfamily protein (.1) Potri.014G012200 [exp] 187 / 3e-55 AT4G37750 405 / 8e-134 DRAGON, COMPLEMENTING A PROTEIN KINASE C MUTANT 1, AINTEGUMENTA, Integrase-type DNA-binding superfamily protein (.1) Potri.002G114800 [exp] 170 / 5e-49 AT4G37750 459 / 5e-155 DRAGON, COMPLEMENTING A PROTEIN KINASE C MUTANT 1, AINTEGUMENTA, Integrase-type DNA-binding superfamily protein (.1) Potri.005G148400 [exp] 159 / 6e-45 AT4G37750 399 / 7e-132 DRAGON, COMPLEMENTING A PROTEIN KINASE C MUTANT 1, AINTEGUMENTA, Integrase-type DNA-binding superfamily protein (.1) Potri.003G205700 [exp] 147 / 4e-41 AT1G51190 635 / 0.0 PLETHORA 2, Integrase-type DNA-binding superfamily protein (.1) Potri.001G169500 [exp] 147 / 4e-41 AT1G72570 389 / 2e-131 Integrase-type DNA-binding superfamily protein (.1) Potri.001G018400 [exp] 145 / 1e-40 AT1G51190 639 / 0.0 PLETHORA 2, Integrase-type DNA-binding superfamily protein (.1) Potri.003G064700 [exp] 144 / 1e-39 AT1G72570 350 / 1e-114 Integrase-type DNA-binding superfamily protein (.1) Potri.008G076400 [exp] 144 / 1e-39 AT5G17430 405 / 4e-133 BABY BOOM, Integrase-type DNA-binding superfamily protein (.1) Potri.010G181000 [exp] 144 / 2e-39 AT5G17430 399 / 2e-130 BABY BOOM, Integrase-type DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF00847 [flax] [poplar] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Lus10011731 pacid=23145634 polypeptide=Lus10011731 locus=Lus10011731.g ID=Lus10011731.BGIv1.0 annot-version=v1.0 ATGTACAGAGGAGTCACCAGACATCATCAACACGGGCGTTGGCAAGCTAGGATTGGGAGGGTTGCAGGGAACAAGGATCTTTACCTTGGAACATTCAGCA CACAAGAGGAAGCAGCAGAAGCATATGATGTAGCAGCAATAAAGTTCAGAGGAATGAATGCTGTCACAAATTTCGACATAACAAGGTATGACGTTGAGAG AATCATGGCTAGCAACACTCTACTTGCTGCCTCCTTGCTGGGGAATCCGCCCGACGAATCAAGGACATCCCACCACCTTATGGTTCTTTACCACCACCAA CATCAGAACCAGTCATCTGATCACTATAATAAGCAGGAAAGCCTGATTGCCACTGACAACAACATCTCTGCTGTTCATAATCAGGAGGTCGAGGAACCAG CTGGGGGTAAGATTCAGGTGTCGAATGCATCTTCGCTAGTGACAAGCTTGAATAGTTCGAGGGAAGCAAGCCCTCATCCCTCAGCAGCAGCTGCAAACAG CTTGACAATGCTGTTTGGAATGGCTCCATCATCATCATCATCATCATCATCAGCCAAGTTGTTGTTTGGTAGTGATCATAGTAGTAACACCTCATCTTCA TGGATTCCTTCACCAGGCGGCCAGTTAAGGACTGCTGCAGTTCCTCTGCCTCATATGCCAGTTTTTGCTGCTTGGACTGATGGCTAG
AA sequence Show only first row Show all	>Lus10011731 pacid=23145634 polypeptide=Lus10011731 locus=Lus10011731.g ID=Lus10011731.BGIv1.0 annot-version=v1.0 MYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDVAAIKFRGMNAVTNFDITRYDVERIMASNTLLAASLLGNPPDESRTSHHLMVLYHHQ HQNQSSDHYNKQESLIATDNNISAVHNQEVEEPAGGKIQVSNASSLVTSLNSSREASPHPSAAAANSLTMLFGMAPSSSSSSSSAKLLFGSDHSSNTSSS WIPSPGGQLRTAAVPLPHMPVFAAWTDG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G37750	AP2_ERF	DRG, CKC1, ANT	DRAGON, COMPLEMENTING A PROTEI...		Lus10011731 [exp]	0	1
AT3G13960	GRF	ATGRF5	growth-regulating factor 5 (.1...		Lus10033441 [exp]	5.8	0.9556
AT2G45480	GRF	ATGRF9	growth-regulating factor 9 (.1...		Lus10038002 [exp]	11.4	0.9522
AT4G32980	HD	ATH1	homeobox gene 1 (.1)		Lus10026432 [exp]	13.0	0.9385
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10009688 [exp]	13.1	0.8685
AT2G45480	GRF	ATGRF9	growth-regulating factor 9 (.1...		Lus10009234 [exp]	15.0	0.9445
AT1G64080		MAKR2	MEMBRANE-ASSOCIATED KINASE REG...		Lus10028754 [exp]	15.0	0.9431
AT1G18650		PDCB3	plasmodesmata callose-binding ...		Lus10021619 [exp]	15.7	0.9073
AT1G08970	CCAAT	NF-YC9, HAP5C	"nuclear factor Y, subunit C9"...		Lus10041221 [exp]	18.0	0.9345
AT1G15910		FDM1	factor of DNA methylation 1, X...		Lus10026076 [exp]	19.0	0.9350
AT2G18500	OFP	ATOFP7, OFP7	ARABIDOPSIS THALIANA OVATE FAM...		Lus10041730 [exp]	20.3	0.9239

Compare expression of checked genes

Lus10011731 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.