Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G36930 482 / 2e-150 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT5G17680 421 / 8e-127 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT1G27170 422 / 1e-126 transmembrane receptors;ATP binding (.1.2) AT1G27180 396 / 2e-116 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT2G16870 354 / 5e-104 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G18360 349 / 5e-104 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G38340 347 / 9e-102 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT4G11170 347 / 2e-101 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G49140 342 / 1e-100 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT1G65850 339 / 3e-99 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005171 [exp] 964 / 0 AT1G27170 576 / 0.0 transmembrane receptors;ATP binding (.1.2) Lus10018616 [exp] 506 / 5e-158 AT5G36930 578 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10039850 [exp] 503 / 1e-157 AT5G36930 573 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10033825 [exp] 486 / 2e-155 AT5G36930 400 / 3e-123 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10011104 [exp] 433 / 7e-132 AT5G17680 574 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10030839 [exp] 430 / 1e-130 AT4G12010 552 / 7e-176 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10041060 [exp] 419 / 2e-126 AT5G17680 641 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10029722 [exp] 414 / 6e-126 AT5G17680 608 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10019708 [exp] 407 / 3e-120 AT5G17680 495 / 1e-150 disease resistance protein (TIR-NBS-LRR class), putative (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G099700 [exp] 941 / 0 AT5G36930 562 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.001G028750 [exp] 789 / 0 AT5G36930 516 / 3e-163 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G018800 [exp] 716 / 0 AT5G36930 512 / 7e-163 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.011G009251 [exp] 654 / 0 AT5G36930 508 / 1e-160 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.011G008164 [exp] 652 / 0 AT5G36930 491 / 3e-154 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.011G009400 [exp] 645 / 0 AT5G36930 504 / 4e-162 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.011G012000 [exp] 631 / 0 AT5G36930 489 / 2e-153 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.011G012475 [exp] 625 / 0 AT5G36930 431 / 1e-131 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.011G008228 [exp] 621 / 0 AT5G36930 468 / 3e-148 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.011G008612 [exp] 621 / 0 AT5G36930 467 / 6e-145 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0173 [flax] [poplar] STIR PF01582 [flax] [poplar] TIR TIR domain CL0022 [flax] [poplar] LRR PF07725 [flax] [poplar] LRR_3 Leucine Rich Repeat CL0023 [flax] [poplar] P-loop_NTPase PF00931 [flax] [poplar] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Lus10011741 pacid=23165902 polypeptide=Lus10011741 locus=Lus10011741.g ID=Lus10011741.BGIv1.0 annot-version=v1.0 ATGGCTTCTTCCATTTCCTCTAAACCCCCTGCTCGCTTAACTTACCAAGTCTTTCTAAGCTTCAGAGGTGAGGACACTCGCAAAACCTTCACCGATCACC TCTACACAGCCCTCACTCAATCCGGGATCACCACCTTCAGAGACGACAATGAAATCCGCCGAGGTGAAGACATCCTGTCGGAGATAAACAACGGAATTCA GCAATCTAGACTCTCTATCCTCGTCCTTTCTTCCGACTACGCTTCCTCTAGATGGTGCCTCGATGAGCTTGCTTTGATCATGGATCGCCGCAAAACCCAC TCCCACATCGTCGTCCCTCTATACATCGACGTCCATCCTTCTAACGTACACTCTCAGACCGGAAGCTACGGAGAAGCATTTGCTCAACATCGAACTGAGT TCAGCAATGAGACGCTTGATCGATGGCGATCAGCTCTTTCGCAGCTTTCTGACATCCCGGACCACATGGTCTTGCAGGACAGGTACGAATCCGAGTTTGT TCAGGCTGTTGTCAACCAAGTGGCCAAGTTGTTGAACCGCACAATACTAGATGTGTCTATTGCTGCAATTTATGGGGTTGGCGGTGTTGGGAAGACCACC ATTGCCAAGATAATCTATAATCAGAACTTTGAAAATTTTGATGCTAGCAGTTTTCTTGCTGATATTAGGAACATCTCAGACCAACCCAATGGATTGATTC GTTTGCAGAGGCAGCTCCTTTCAGATCTAACAAAGGGAAGTGCTACCAAAGTTTACGGGGTAGATGAAGGGATTGTCAAGATCAAAGATACTTTGTCCCG CAAGAGAGTTCTCCTTGTTCTCGATGATGTGGATCAGGCAGAGCAGTTGAATGCAATTATGGGATTACTGGAGTGGTTTCACCCTGGAAGCAAGATCCTA ATAACTACTAGGAATCAACATATATTGGGGGCTCATGAGGTTAGTTTCATGTTGAAGGTAAAAGAATTGGATGATAAAGAATCACTTCAGCTCTTCAGTT GGCATGCATTTGGTTCTGATTGCCCTGAGCTTGGTTACGAGTTGCTCTCTATGGATGTTGTGCATCATTGTGGTGGAATTCCATTAGCTCTTCAAGTTTT GGCCTCTACTCTTTATAGGAAGCCTAAGGACATATGGGAAAGTGTGTTGCAGAGGCTGAAAAAGGTTCCTGAGAGCGATATTCAAAGCATTTTCCAGATA ACATATGCTTCTCTTGAAGATGATCATGATAGAAATTTATTTCTCGACATTGCTTGTCTTTTCAATGGAATGGACTTAAATTATGTTGCTAAGATAGCTG ATGGATGTGGTTTCTTTACAGTTGTTGGTGTAAAGAATCTGATGCGCAGATGTTTAGTAACTATCAGTGATGAAAACAGGTTAACAATGCATCAGCTGTT GGTAGACATGGGAAGAGAGATTGTTCGCCAGGAATCAGTAGATGATCCTGGGCAACGCAGTAGGCTGTGTGATCATAAGGATTCCTTCATGGTATTGAAA GAGAAGAAGGGTACTGATATAGTTAAAGGTATCATTCTCAATCTTCCAATGCTGAATAGAAGTTTGTCAAAGTCTCAAAAGAAGGACATGAGTTCAAGTA GAAAATTGATGGTGACACACCAAGAAAACGTATCAAAAAGACCACGTCTTGGATTCTTTGATCAAGAACCAGCAGACATTACTTCAGAAGAATCATTGTC TACACAGTCAGTTGCAAGGATGCAGAATCTTAAGTTGCTCTACCTCACTGGTGTTAGATTCAAAGGAAACTACAAGAATTTCCCTAAGAAGTTAGTTTGG TTGCGTTGGAACGGCTTCCCTATGGAATATATACCAAAGGAAATGTACCTTGAGAAGTTGGTTGTACTTGACTTGAGAAATAGCAACCTCAAATATCTGT GGAAAGGAGAAAAGTTTATGCCAGTGTTGAAGATACTTAACCTGAATCATTCTCGATACCTTGTTACAACCCCTAACTTCAAAGGGTTCCCTAGCCTTGA GAGACTCCTGTTGAAGGATTGCGCAAGCCTAGTTGAGATTGATGAATCCCTCTGCAAGCTCAAGGGACTTGAGCTGTTAAATCTGCAAGATTGTATAAGT CTCGAAAAGCTTCCTACAGAGTTTGGTATGCTAAAATTCTCTCTTTCCATCCTCATCCTATCTGGTTGCTTTAATCTCCGACAGATGCCCAAGGATTTCA ACAAGATGGAGTCATTAAAAGTTTTACTTGCTGACAGAGTTGGCATAAACCAGGTAGGCAATAGCTCTGGAACTTCTGATGCCCTCAGTTTGTCTTCAGG AACTTTCAAATTTTGGTCCTGGATATTGCAAAGAAGATTTACGCAATCAAGTGCACTTTCGTTTTCTATTTTTCCTAGCACCTTGGTTAGCTTGAGTCTT GCAGATTGCAACATATCAAATCTCTCCATAAGTTTTAGCCTCATACCCTTTTTACAAAGCTTGAACTTGAGTAAGAACCCCTTTCATTACCTACCTGAAG ATATCAACAAACTCCCTTTGCTGGAGACCCTCGAGTTAGAGTTGTGCACAGAACTCAAAGCACTTCCTGAGCTTCCAACCAGTTTAAACGTCTTAAAGGC AGACGACTGCACGTCATTGAATAGAGTTACCAACTTACCAAACTTGCTTGAATGGTTGGATTTAGAAATTCATGGTTGTGAAAAGTTGGTTGAGGTTCAA GGCTTATTCAAATTAGAACCAGTAACCAGCATTGACACAGAAGTGCTCAACCATTTGGGGTTGTTCAATTGGGAAATCTTCTCCGGGATTGAAATTGAGA TGTCCAATGCCTTTTCATGCACAATAATGAAGACACCAATCCAAGTACTCCAAGAATGCAACATATTCAGTACATTTATTCCCGGGAGTGAGGTTATGGA CTGGTTTGACATTCAGGCTGAAGAATCGTCATCAATATCAGTAGTGTTGCCAATTTCCCCATGTAGCGGAAAGATACGTGGCTTGAGCTTTTGCACTGTC TATACGGGGAAATGGGATAAAGATGAAGAAAAGGAAGAATCACTTCTTGATGAGAATTATGCAAAAATCAGCAATCAAACGAGTGGCGTGAAATGGTGTT ACAGCCCTATGTTTTTTGGGATTCCTAAGGCCAGGATGGATGGCAGCAGCATGTTATGGTTAAGTCATTGGACTTTTGGAGAATGCTTAGAAGGAGGGGA TGAACTTTATATTGTCATGGATCTGGCATCATGCTTCAACGTTATAGGGTGTGGGGCTCGAATTATATATGAGCAGCAGCAAGAGAGAAGCAAAAATTCA TCGACTGGTACAGAAATAGCTGAAAGCAGCAATAGGTACCACAAAACAATGGCTGAAGTGGATCTTTCCGGATATGAAGTGGGAAAAGATGCATTTCTCT TGAGCCATCATAAGTTCCTAACTCATCAAGGAGTTCCAAGAGATGATTGGGATGATTTGAGTGGTTATGAGTACCTCTTCGAACCTAATTCTTCTGAAAG TGAATATGTCACTACAGATGATGATGGAATATAA
AA sequence Show only first row Show all	>Lus10011741 pacid=23165902 polypeptide=Lus10011741 locus=Lus10011741.g ID=Lus10011741.BGIv1.0 annot-version=v1.0 MASSISSKPPARLTYQVFLSFRGEDTRKTFTDHLYTALTQSGITTFRDDNEIRRGEDILSEINNGIQQSRLSILVLSSDYASSRWCLDELALIMDRRKTH SHIVVPLYIDVHPSNVHSQTGSYGEAFAQHRTEFSNETLDRWRSALSQLSDIPDHMVLQDRYESEFVQAVVNQVAKLLNRTILDVSIAAIYGVGGVGKTT IAKIIYNQNFENFDASSFLADIRNISDQPNGLIRLQRQLLSDLTKGSATKVYGVDEGIVKIKDTLSRKRVLLVLDDVDQAEQLNAIMGLLEWFHPGSKIL ITTRNQHILGAHEVSFMLKVKELDDKESLQLFSWHAFGSDCPELGYELLSMDVVHHCGGIPLALQVLASTLYRKPKDIWESVLQRLKKVPESDIQSIFQI TYASLEDDHDRNLFLDIACLFNGMDLNYVAKIADGCGFFTVVGVKNLMRRCLVTISDENRLTMHQLLVDMGREIVRQESVDDPGQRSRLCDHKDSFMVLK EKKGTDIVKGIILNLPMLNRSLSKSQKKDMSSSRKLMVTHQENVSKRPRLGFFDQEPADITSEESLSTQSVARMQNLKLLYLTGVRFKGNYKNFPKKLVW LRWNGFPMEYIPKEMYLEKLVVLDLRNSNLKYLWKGEKFMPVLKILNLNHSRYLVTTPNFKGFPSLERLLLKDCASLVEIDESLCKLKGLELLNLQDCIS LEKLPTEFGMLKFSLSILILSGCFNLRQMPKDFNKMESLKVLLADRVGINQVGNSSGTSDALSLSSGTFKFWSWILQRRFTQSSALSFSIFPSTLVSLSL ADCNISNLSISFSLIPFLQSLNLSKNPFHYLPEDINKLPLLETLELELCTELKALPELPTSLNVLKADDCTSLNRVTNLPNLLEWLDLEIHGCEKLVEVQ GLFKLEPVTSIDTEVLNHLGLFNWEIFSGIEIEMSNAFSCTIMKTPIQVLQECNIFSTFIPGSEVMDWFDIQAEESSSISVVLPISPCSGKIRGLSFCTV YTGKWDKDEEKEESLLDENYAKISNQTSGVKWCYSPMFFGIPKARMDGSSMLWLSHWTFGECLEGGDELYIVMDLASCFNVIGCGARIIYEQQQERSKNS STGTEIAESSNRYHKTMAEVDLSGYEVGKDAFLLSHHKFLTHQGVPRDDWDDLSGYEYLFEPNSSESEYVTTDDDGI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G36930			Disease resistance protein (TI...		Lus10011741 [exp]	0	1
AT5G06120			ARM repeat superfamily protein...		Lus10041603 [exp]	1.0	0.9461
AT2G47980		SCC3, ATSCC3	sister-chromatid cohesion prot...		Lus10008306 [exp]	1.4	0.9413
AT5G58100			unknown protein		Lus10027581 [exp]	3.0	0.9103
AT5G55840			Pentatricopeptide repeat (PPR)...		Lus10037968 [exp]	4.0	0.9183
AT1G04390			BTB/POZ domain-containing prot...		Lus10027380 [exp]	4.0	0.9006
AT3G59410		ATGCN2, GCN2	ARABIDOPSIS THALIANA GENERAL C...		Lus10014896 [exp]	4.2	0.9154
AT1G71240			Plant protein of unknown funct...		Lus10002408 [exp]	4.5	0.9103
AT3G05090		LRS1	LATERAL ROOT STIMULATOR 1, Tra...		Lus10001717 [exp]	5.2	0.9259
AT5G06600		AtUBP12, UBP12	ubiquitin-specific protease 12...		Lus10043456 [exp]	5.9	0.9182
AT3G19190		ATATG2	autophagy 2 (.1)		Lus10019868 [exp]	7.9	0.9140

Compare expression of checked genes

Lus10011741 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.