Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G31180 216 / 2e-70 MYB ATMYB14, Myb14at ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 14, myb domain protein 14 (.1) AT3G23250 218 / 3e-70 MYB ATMYB15, ATY19 myb domain protein 15 (.1.2) AT1G06180 209 / 1e-67 MYB ATMYB13, AtMYBlfgn myb domain protein 13 (.1) AT1G79180 197 / 2e-62 MYB ATMYB63 myb domain protein 63 (.1) AT1G56160 193 / 1e-60 MYB ATMYB72 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 72, myb domain protein 72 (.1) AT3G61250 192 / 2e-60 MYB LMI2, ATMYB17 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1) AT1G16490 191 / 5e-60 MYB ATMYB58 myb domain protein 58 (.1) AT4G21440 187 / 9e-58 MYB ATMYB102, ATM4 A. THALIANA MYB 4, MYB-like 102 (.1) AT3G02940 182 / 4e-56 MYB ATMYB107 myb domain protein 107 (.1) AT3G12820 180 / 4e-56 MYB ATMYB10 myb domain protein 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021185 [exp] 413 / 7e-148 AT3G23250 231 / 1e-75 myb domain protein 15 (.1.2) Lus10041145 [exp] 249 / 2e-83 AT3G23250 237 / 3e-78 myb domain protein 15 (.1.2) Lus10021871 [exp] 240 / 5e-80 AT3G23250 233 / 9e-77 myb domain protein 15 (.1.2) Lus10003557 [exp] 210 / 4e-67 AT3G23250 239 / 4e-78 myb domain protein 15 (.1.2) Lus10033889 [exp] 208 / 2e-66 AT3G23250 239 / 1e-78 myb domain protein 15 (.1.2) Lus10022021 [exp] 198 / 6e-64 AT2G31180 219 / 2e-72 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 14, myb domain protein 14 (.1) Lus10042561 [exp] 195 / 2e-62 AT3G23250 206 / 5e-67 myb domain protein 15 (.1.2) Lus10030378 [exp] 197 / 6e-62 AT3G61250 341 / 8e-118 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1) Lus10014784 [exp] 194 / 3e-61 AT3G61250 342 / 1e-118 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G166700 [exp] 233 / 2e-76 AT3G23250 237 / 2e-77 myb domain protein 15 (.1.2) Potri.005G224100 [exp] 220 / 2e-71 AT3G23250 255 / 1e-84 myb domain protein 15 (.1.2) Potri.002G038500 [exp] 216 / 1e-69 AT2G31180 238 / 1e-78 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 14, myb domain protein 14 (.1) Potri.019G018200 [exp] 200 / 2e-64 AT2G31180 223 / 1e-73 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 14, myb domain protein 14 (.1) Potri.002G157600 [exp] 193 / 1e-60 AT3G61250 363 / 3e-126 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1) Potri.005G096600 [exp] 193 / 8e-60 AT1G16490 232 / 1e-74 myb domain protein 58 (.1) Potri.007G067600 [exp] 193 / 8e-60 AT1G16490 229 / 2e-73 myb domain protein 58 (.1) Potri.019G118900 [exp] 189 / 1e-59 AT2G31180 194 / 7e-62 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 14, myb domain protein 14 (.1) Potri.014G100800 [exp] 189 / 3e-59 AT2G16720 207 / 3e-66 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 7, myb domain protein 7 (.1) Potri.013G149200 [exp] 188 / 3e-59 AT2G31180 193 / 3e-61 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 14, myb domain protein 14 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10011820 pacid=23165544 polypeptide=Lus10011820 locus=Lus10011820.g ID=Lus10011820.BGIv1.0 annot-version=v1.0 ATGGTGAGAGCTCCATGCTGCGAGAAGAAGGGACTGAAGAGAGGTCCATGGACTCCTCAAGAAGATCAACTCCTCACTTGCTACATTCAAAACCACGGCC ATCCAAACTGGCGGGCTCTCCCTAAGCTTGCTGGCCTTTTGAGGTGTGGCAAGAGCTGCCGTCTCCGATGGATCAACTACCTCAACCCTAATATCAAGAG AGGCAACTTCACTAGGGATGAAGAAGACATCATTATCCGCCTCCATCACTCTCTCGGAAACAGGTGGTCAGCAATTGCAGCGGAATTACCAGGGAGAACA GACAACGAGATCAAGAATGTTTGGCACACCCATTTGAAGAAAAGATTGAATCAAAATAATAACCAAGGGAAGCAGCAATCTGCTGAAACCCAGAAGCAGA GTTACGCGCCTCTGTCGCCTGATCAGTTGTCATTCGGCACCAGTACGAGCAGCGGCGCCGCAGTTTCGTCGGTCACCGCCGACAACTCCCTCGCCACGGC GGAGACGAGCAATTATGTGGAGTTACCTTCGCCGACGTCGCTAGATGATTTCCCGATCATCGACGACGACTTGTGGTCGGATCCATCGCAAACGGAGGAA TGGGTGAATATGCAATTTGATGATACCCAAATTAATTTCTCGGACTTTTGGGAGCTGAGCACTGTGGAAGGGAGTACCGGCGGCGGGGTTGTTCCGGGAA TCGGCGACTCTGTGGATTTTTGGTACGATATGTTGGTCCAAGCTGGGGAGATTGAGGGATTACCATGA
AA sequence Show only first row Show all	>Lus10011820 pacid=23165544 polypeptide=Lus10011820 locus=Lus10011820.g ID=Lus10011820.BGIv1.0 annot-version=v1.0 MVRAPCCEKKGLKRGPWTPQEDQLLTCYIQNHGHPNWRALPKLAGLLRCGKSCRLRWINYLNPNIKRGNFTRDEEDIIIRLHHSLGNRWSAIAAELPGRT DNEIKNVWHTHLKKRLNQNNNQGKQQSAETQKQSYAPLSPDQLSFGTSTSSGAAVSSVTADNSLATAETSNYVELPSPTSLDDFPIIDDDLWSDPSQTEE WVNMQFDDTQINFSDFWELSTVEGSTGGGVVPGIGDSVDFWYDMLVQAGEIEGLP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G23250	MYB	ATMYB15, ATY19	myb domain protein 15 (.1.2)		Lus10011820 [exp]	0	1
AT1G21010			unknown protein		Lus10035664 [exp]	2.0	0.8929
AT2G26530		AR781	Protein of unknown function (D...		Lus10032766 [exp]	2.0	0.8916
AT2G19130			S-locus lectin protein kinase ...		Lus10032944 [exp]	2.2	0.8658
AT1G80840	WRKY	ATWRKY40, WRKY4...	WRKY DNA-binding protein 40 (....		Lus10002309 [exp]	3.2	0.8949
AT2G38470	WRKY	ATWRKY33, WRKY3...	WRKY DNA-binding protein 33 (....		Lus10026409 [exp]	4.6	0.8590
AT3G23250	MYB	ATMYB15, ATY19	myb domain protein 15 (.1.2)		Lus10021185 [exp]	4.9	0.8611
AT1G80840	WRKY	ATWRKY40, WRKY4...	WRKY DNA-binding protein 40 (....		Lus10026082 [exp]	5.5	0.8928
AT2G05940		RIPK	RPM1-induced protein kinase, P...		Lus10034897 [exp]	9.0	0.8548
AT5G13200			GRAM domain family protein (.1...		Lus10035154 [exp]	9.2	0.8281
AT4G39830			Cupredoxin superfamily protein...		Lus10022504 [exp]	11.0	0.8335

Compare expression of checked genes

Lus10011820 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.