Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23240 184 / 4e-58 AP2_ERF ERF1, ATERF1 ethylene response factor 1 (.1) AT2G31230 122 / 6e-34 AP2_ERF ATERF15 ethylene-responsive element binding factor 15 (.1) AT1G06160 122 / 8e-34 AP2_ERF ORA59 octadecanoid-responsive Arabidopsis AP2/ERF 59 (.1) AT5G47220 96 / 2e-23 AP2_ERF ATERF-2, ERF2, ATERF2 ETHYLENE RESPONSE FACTOR- 2, ethylene responsive element binding factor 2 (.1) AT5G43410 88 / 1e-21 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT4G17500 89 / 6e-21 AP2_ERF ATERF-1, AtERF1 ethylene responsive element binding factor 1 (.1) AT5G51190 88 / 6e-21 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT3G23220 85 / 2e-20 AP2_ERF ESE1 ethylene and salt inducible 1, Integrase-type DNA-binding superfamily protein (.1) AT1G04370 84 / 3e-20 AP2_ERF ATERF14 Ethylene-responsive element binding factor 14 (.1) AT5G47230 87 / 9e-20 AP2_ERF ATERF5, ATERF-5, ERF5 ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR- 5, ethylene responsive element binding factor 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021193 [exp] 354 / 6e-125 AT3G23240 209 / 2e-68 ethylene response factor 1 (.1) Lus10014655 [exp] 153 / 1e-45 AT3G23240 202 / 3e-65 ethylene response factor 1 (.1) Lus10006579 [exp] 151 / 5e-45 AT3G23240 211 / 4e-69 ethylene response factor 1 (.1) Lus10022015 [exp] 147 / 2e-43 AT3G23240 176 / 1e-55 ethylene response factor 1 (.1) Lus10003562 [exp] 124 / 1e-34 AT3G23240 146 / 1e-43 ethylene response factor 1 (.1) Lus10042557 [exp] 115 / 1e-31 AT3G23240 155 / 7e-48 ethylene response factor 1 (.1) Lus10033885 [exp] 116 / 3e-31 AT3G23240 142 / 7e-42 ethylene response factor 1 (.1) Lus10027469 [exp] 115 / 3e-31 AT3G23240 145 / 2e-43 ethylene response factor 1 (.1) Lus10022935 [exp] 115 / 3e-30 AT2G31230 145 / 4e-42 ethylene-responsive element binding factor 15 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G072300 [exp] 206 / 1e-66 AT3G23240 201 / 2e-65 ethylene response factor 1 (.1) Potri.008G166200 [exp] 201 / 6e-65 AT3G23240 202 / 1e-65 ethylene response factor 1 (.1) Potri.005G223200 [exp] 185 / 2e-58 AT3G23240 165 / 4e-51 ethylene response factor 1 (.1) Potri.002G039100 [exp] 177 / 2e-55 AT3G23240 147 / 3e-44 ethylene response factor 1 (.1) Potri.013G045200 [exp] 167 / 3e-51 AT3G23240 167 / 5e-52 ethylene response factor 1 (.1) Potri.019G014409 [exp] 160 / 1e-48 AT3G23240 161 / 1e-49 ethylene response factor 1 (.1) Potri.005G223300 [exp] 136 / 4e-39 AT3G23240 163 / 5e-50 ethylene response factor 1 (.1) Potri.002G039000 [exp] 128 / 5e-36 AT3G23240 138 / 2e-40 ethylene response factor 1 (.1) Potri.011G061700 [exp] 115 / 1e-31 AT3G23240 111 / 1e-30 ethylene response factor 1 (.1) Potri.004G051700 [exp] 110 / 1e-29 AT5G47220 111 / 1e-30 ETHYLENE RESPONSE FACTOR- 2, ethylene responsive element binding factor 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF00847 [flax] [poplar] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Lus10011829 pacid=23165535 polypeptide=Lus10011829 locus=Lus10011829.g ID=Lus10011829.BGIv1.0 annot-version=v1.0 ATGCGCCTCCAAGACACAACTACAACCAGAGAAATAAGCACTAGTCCCAATTGTTATTCTCCATCCATCTTGGTTTCAATGGGATCCCCAATTTTCCACT TCTCATCGCCGGAATCCTCTTCCTTCGGATCACCGGAGCAATTCTCCAGTCAATCCCTCAACCAAACCCATCATCTACCCTTCAACGAGAACGACTCCGA AGAAATGCTCTTGTTCGGCCTCATCGCCTCCAACAACAGTCAAACCAAACCAACCATCAAAGAAGAGGAAGTCAGCTCCGACTCCGCCGCCTACAAACCA TCATTGCCACCGCCGCCAGCTAACAAGAAGGACAAGTCCTTCAGGGGAGTGAGGCGGAGGCCGTGGGGGAAATTCGCGGCGGAAATAAGGGATTCGACTC GGCACGGTGTCCGGGTGTGGCTCGGAACATTCGACAGCGCAGAGGCGGCGGCTCTGGCGTACGACCAGGCGGCGTTCTCTATGAGGGGGCCGGCGGCGAT AATGAACTTCCCGGTGGAGTTGGTGGTGGAGTCGCTGGAGGACATGGGGTGCAACGTCCGGCGGGACGAGGAAGAGGAGGAGAAGGAAGGTTGCTCGCCG GTGGTAGCGTTAAAGAGAAAGCACTCCATGAGGAGGAAAATGAACGGACGGGGAGGGAAGAAGAACGAAAGGGATCATTTGAATGTAGTGGTCTTGGAGG ATTTGGGAGCCGATTATTTGGAGGAGTTGCTGATGAATTCTTCCGATGAGACCGCCGGCGTGCGTTAG
AA sequence Show only first row Show all	>Lus10011829 pacid=23165535 polypeptide=Lus10011829 locus=Lus10011829.g ID=Lus10011829.BGIv1.0 annot-version=v1.0 MRLQDTTTTREISTSPNCYSPSILVSMGSPIFHFSSPESSSFGSPEQFSSQSLNQTHHLPFNENDSEEMLLFGLIASNNSQTKPTIKEEEVSSDSAAYKP SLPPPPANKKDKSFRGVRRRPWGKFAAEIRDSTRHGVRVWLGTFDSAEAAALAYDQAAFSMRGPAAIMNFPVELVVESLEDMGCNVRRDEEEEEKEGCSP VVALKRKHSMRRKMNGRGGKKNERDHLNVVVLEDLGADYLEELLMNSSDETAGVR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G23240	AP2_ERF	ERF1, ATERF1	ethylene response factor 1 (.1...		Lus10011829 [exp]	0	1
AT3G54200			Late embryogenesis abundant (L...		Lus10043084 [exp]	1.4	0.9729
AT2G45220			Plant invertase/pectin methyle...		Lus10027202 [exp]	3.0	0.9724
AT1G68390			Core-2/I-branching beta-1,6-N-...		Lus10034349 [exp]	3.5	0.9792
AT3G09220		LAC7	laccase 7 (.1)		Lus10035546 [exp]	5.7	0.9622
AT5G40690			unknown protein		Lus10003797 [exp]	9.8	0.9597
AT5G01250			alpha 1,4-glycosyltransferase ...		Lus10027770 [exp]	12.4	0.9695
AT1G63970		MECPS, ISPF	2C-METHYL-D-ERYTHRITOL 2,4-CYC...		Lus10017522 [exp]	15.7	0.9690
AT1G76680		OPR1, ATOPR1	ARABIDOPSIS 12-OXOPHYTODIENOAT...		Lus10001276 [exp]	16.2	0.9704
AT5G39160			RmlC-like cupins superfamily p...		Lus10035185 [exp]	21.3	0.9477
					Lus10000858 [exp]	24.0	0.9680

Compare expression of checked genes

Lus10011829 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.