Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13040 116 / 3e-32 AP2_ERF Integrase-type DNA-binding superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022769 [exp] 300 / 1e-103 AT4G13040 150 / 1e-45 Integrase-type DNA-binding superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G246100 [exp] 172 / 2e-53 AT4G13040 158 / 4e-48 Integrase-type DNA-binding superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF00847 [flax] [poplar] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Lus10011836 pacid=23169243 polypeptide=Lus10011836 locus=Lus10011836.g ID=Lus10011836.BGIv1.0 annot-version=v1.0 ATGGTGAGCTTGCGAAGACGGAGGCTGTTGGGACTATGCAGTGGTAAGGATGCTTGTTCTGAAGAATTGAGTTGGAAGTTTGTGTGTGTCATGGTTTACC GTTTAAGAGGAAGTTCATTTGTGACTCCACTTCCTCAAGCACTTACACCTGTAAGCTCGATTCCAAGTGCCAAGTCTTCTGTCAATGTCCAATCTGTTTC GTCTGGTGAAGCCAATCTATCGGATGAGAGAATTTTCGCTATATGTGGACCGGATTCGTCGAACGCATCGCCTCATGATTCACCAAAGGAGGAGCAGCAG TCTCATGCCTACCCAGACCAACCAATTAAGAGGCGAAAGCGACACAGAAGGAAGCACGTTCAGAACCAAGAACCATGCGTTATGCGAGGTGTCTACTTCA AGAACATGAAGTGGCAAGCAGCAATCAAAGTTGACAAGAAACAGATCCATTTGGGGACGGTCGGTTCTCAGGAAGAAGCTGCTCGTCTCTACGACAGGGC TGCATTCATGTGTGGGAGGGAGCCGAACTTTGAGATCCCGGAGGAGGAGAAGGAAGAGCTCAGGAAATTCAAGTGGGAGGAGTTCTTAGCCATTACTCGA AGCGCAATCAACAACAAGAAGCACAAGAGAGGCATGAGAAGGATCGGAGGAGGTGTTGTGATGCAGAAGATGTCGTTGGAGGCGAATGGTGATCCAATGC AGGTTGGTCTGTCTTGTTCAGAAGAAGGGGGAGCAGATTCATCAGCCACTTGA
AA sequence Show only first row Show all	>Lus10011836 pacid=23169243 polypeptide=Lus10011836 locus=Lus10011836.g ID=Lus10011836.BGIv1.0 annot-version=v1.0 MVSLRRRRLLGLCSGKDACSEELSWKFVCVMVYRLRGSSFVTPLPQALTPVSSIPSAKSSVNVQSVSSGEANLSDERIFAICGPDSSNASPHDSPKEEQQ SHAYPDQPIKRRKRHRRKHVQNQEPCVMRGVYFKNMKWQAAIKVDKKQIHLGTVGSQEEAARLYDRAAFMCGREPNFEIPEEEKEELRKFKWEEFLAITR SAINNKKHKRGMRRIGGGVVMQKMSLEANGDPMQVGLSCSEEGGADSSAT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G13040	AP2_ERF		Integrase-type DNA-binding sup...		Lus10011836 [exp]	0	1
AT3G18820		RAB71, AtRABG3f...	RAB GTPase homolog G3F (.1)		Lus10042328 [exp]	4.5	0.8968
AT2G06530		VPS2.1	SNF7 family protein (.1)		Lus10017166 [exp]	4.6	0.8681
AT1G34750			Protein phosphatase 2C family ...		Lus10020924 [exp]	4.7	0.8965
AT4G39230			NmrA-like negative transcripti...		Lus10023557 [exp]	4.9	0.8868
AT2G25870			haloacid dehalogenase-like hyd...		Lus10005169 [exp]	5.5	0.8497
AT1G65420		NPQ7	NONPHOTOCHEMICAL QUENCHING 7, ...		Lus10039937 [exp]	6.9	0.8666
AT5G36930			Disease resistance protein (TI...		Lus10024886 [exp]	7.1	0.8715
AT5G36930			Disease resistance protein (TI...		Lus10013729 [exp]	11.0	0.8358
AT4G17720			RNA-binding (RRM/RBD/RNP motif...		Lus10025743 [exp]	11.4	0.8899
AT5G41240		GST10B, ATGSTT2	glutathione S-transferase THET...		Lus10000606 [exp]	12.0	0.8663

Compare expression of checked genes

Lus10011836 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.