Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07060 621 / 0 EMB1974 embryo defective 1974, NHL domain-containing protein (.1) AT2G02850 94 / 3e-22 ARPN plantacyanin (.1) AT2G44790 82 / 2e-17 UCC2 uclacyanin 2 (.1) AT3G27200 81 / 2e-17 Cupredoxin superfamily protein (.1) AT1G17800 79 / 6e-17 AtENODL22 early nodulin-like protein 22 (.1) AT2G32300 81 / 1e-16 UCC1 uclacyanin 1 (.1) AT2G31050 79 / 2e-16 Cupredoxin superfamily protein (.1) AT3G60270 76 / 2e-15 Cupredoxin superfamily protein (.1) AT2G26720 76 / 3e-15 Cupredoxin superfamily protein (.1) AT1G56500 80 / 7e-15 haloacid dehalogenase-like hydrolase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022801 [exp] 1413 / 0 AT3G07060 631 / 0.0 embryo defective 1974, NHL domain-containing protein (.1) Lus10022800 [exp] 201 / 2e-60 AT2G02850 100 / 4e-28 plantacyanin (.1) Lus10018938 [exp] 118 / 5e-31 AT2G02850 151 / 2e-48 plantacyanin (.1) Lus10041850 [exp] 117 / 1e-30 AT2G02850 121 / 1e-36 plantacyanin (.1) Lus10028640 [exp] 116 / 3e-30 AT2G02850 151 / 3e-48 plantacyanin (.1) Lus10028641 [exp] 116 / 3e-30 AT2G02850 151 / 3e-48 plantacyanin (.1) Lus10041849 [exp] 114 / 1e-29 AT2G02850 130 / 5e-40 plantacyanin (.1) Lus10041848 [exp] 114 / 1e-29 AT2G02850 130 / 4e-40 plantacyanin (.1) Lus10028396 [exp] 93 / 6e-22 AT2G02850 107 / 4e-31 plantacyanin (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G241366 [exp] 620 / 0 AT3G07060 584 / 0.0 embryo defective 1974, NHL domain-containing protein (.1) Potri.002G241500 [exp] 136 / 2e-37 AT2G02850 122 / 8e-37 plantacyanin (.1) Potri.002G074000 [exp] 113 / 3e-29 AT2G02850 154 / 1e-49 plantacyanin (.1) Potri.001G209300 [exp] 106 / 7e-27 AT2G02850 155 / 4e-50 plantacyanin (.1) Potri.001G332200 [exp] 88 / 6e-20 AT3G27200 171 / 5e-55 Cupredoxin superfamily protein (.1) Potri.008G151000 [exp] 85 / 9e-19 AT5G26330 183 / 2e-59 Cupredoxin superfamily protein (.1) Potri.010G089900 [exp] 83 / 6e-18 AT5G26330 187 / 7e-61 Cupredoxin superfamily protein (.1) Potri.002G156100 [exp] 82 / 8e-18 AT5G26330 138 / 1e-41 Cupredoxin superfamily protein (.1) Potri.002G156401 [exp] 82 / 8e-18 AT5G26330 138 / 1e-41 Cupredoxin superfamily protein (.1) Potri.007G104600 [exp] 80 / 1e-17 AT1G17800 94 / 3e-25 early nodulin-like protein 22 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0026 [flax] [poplar] CU_oxidase PF02298 [flax] [poplar] Cu_bind_like Plastocyanin-like domain
Representative CDS sequence Show only first row Show all	>Lus10011867 pacid=23169229 polypeptide=Lus10011867 locus=Lus10011867.g ID=Lus10011867.BGIv1.0 annot-version=v1.0 ATGATCCAGAGATGTGGAAGATTCAGACAAATTTCAAGGATCTTACCTCGTCTTTCCTCAGGAAATTGCTTACTGCAGTATGGAGAAGCCAGAGATTGCT TTACCTCTTCCACTTCTGTCACTCCTTATCGTTCATTTCTAAGTAAGAACACTAATCCAGAAACATTGCGGCGGATATTCACCTCTCAAAGGTTCTCAAC AGCATCAGATGCATCCACAAAAGTTTCTTCACCTACAGAAGATGGCTTGGTCTCTGTTATTCGGTCCACTTCCGACGAGCTTCAAGGTCCGAATCATGTT TGGTTAAACGTGGATGAAAGGGATAACCCCTTCTTAAAGAAAAGTGGAGCATTTCTAGTTCTTGCTGGACAGCTTTTACAGGATTCTGACGTAGTAGCTA TGCTTGAGAAGTTTAAATTGCTACAGCAGAGATTCTCTGAGCTTTGTGTTGTGGCCATTCACGCTGGAACTTCAGTTGACCTTGCTGCTGATCAAGCACG TCTAGTTGACTTGATAGCGAAAGAATACGTCACCTTCCCTATCTTGTTGTGCAATAAGAATTTCTCAGAGATGGAACATGGAGCTTGCTATGTTTTGTTT GGAGACTCTGAGGATCCACGAATTTATCACAAGAAGGATCTGGATCTCGGAGTTCTTCATACAGCGGTCAAGGAGTTTTGTGTCCGGCAAAAACAGAATT CTGACGACAGGAACTCGAGTTTGGAATGTTTAAAGGGCACTTGGGTGCAACACGACACTCCGAGAGAACCACTTGCAGCTTCATATCTGCAAAATTTGCT TCTCTACTTCCCAGGATGTGTATCTGGAGATATATCTGGCGGTCGCCTATTCTTTTCCGACAGCAATCATCACCGTATCATCATATGTGACGAAAATGGA GAAATTCTGGATTGTATTGGTTCGTCTCCAGGTTTCGAGGATGGAGACTTCGAAAGTGCCAAGATTTTGCGTCCTGGAGCTTCGTTTTATGACGACGCTG AAGATTATCTATATTTTGTCGATTCGGAGAACCATGTGGTCAGGAGAGCTGACTTGGAGGGAAGAGTTCTGGATACAGTATATCCTCCTCCTATTGTCAG TATAGAAAAGGATAGCCTATGGAGTAAGATTACTGGTAAATTCGGTTTCGGAAAGACGATTGAACCCAAGTCAGAAGAATTCGATTCCAACTCTTTTCTG TTCCCTTGGCACATTTTGAAGTCAGAAGAAGATCACTGCTTTATCATTAACCGCAGCTTTGAGACTCTATGGGTAATGGATTTGGCTTCCGGAGAGATAA AAGATGTAATTAAAGGATTTCGAAAGATTATGGACACCTGCAGAAATTTGATCGACGATAAGTTATCTCTCTTGAAGGAAATTCCAAGTGATTGGTTGGA GCAGCAGACGAGTAAAGAGATCCCTTATGCTACTCTCATATCTTCCGTGGCAACTTGTAACAACCATGTGTTCGTCTGTGATGCTAATGCTCAGAAGGTG CTGAAACTGAATAGAGAATCAAGAGCCTGCTCCATGTTTCAGTTCAGAAACGTTGGGGTCCTCGGTCTACCTTATTGGTCTGCGAATGTTCTCGAAAAAG TATATTCCATTACACCGAGTCATGAATCTTGGACTGATCACATTCAGCAGTTCAGCCAATTACCAGGCAGAACCGACATAGAGATAAAGGTAGACATTCC TACGGATACTGAGCTCGTCGAGCCATTGCATGAAGGATGCATCTGGCGCCAGGCAAGAGGTGCTGCTACCGAAGTCTCGGGAACGAAAACCGAAATAGAC TCCTCCGAGAAGGCTGGTGTTGCCCAGAAATGGTATGACGAGCTAGACAATCTGGCGTTTTTGTCGCCTGAGCCGGAGACAAATGTTGAAGAAGAAGATG CTAGCACGTCTGTAGATGATGAGACTTACAAGGATGGCAAAATTCACATTCATTGTTCCATCAATACGAGCCCCGGCTTGAGTGAGGTGGTTGTATACGC TCCACTGTACCTGAGACTTAGAAGAGATGCCAATATAGAAGAAAACAAGCAAGAGAAATATGCCGCAAGGATTGCTGATATTCTCAAATGGGGGAGATCC AGCGAGGCGATGCGAGATTTGTGCATTCAGGTATTCTTAAGATCGGGGACGGATATACGAGACCTCGTGTTTGTGAAACCTCTACACGTCAGGATAAGAC TTGAATGCCCTGATCACCCTAAAGCACCTGATAATACCAAAGATATCATATTGACCAAGTCTTCCATTGATGTCAATTTCTTCTTTTCCCTCTCGACAAA GCTTGAAGGAATCGAGGCATTGAGTTACACGGTGGGAGGGAACTCGGGATGGAGCTACAGCGTCCAGAGCTGGACAGATGGGAAGAAGTTCAAAGCTGGA GACGCCCTCAGTTTCAAGTACGATTCGTCGCTGCACGATGTGGCAGCGGTGGGGATGAGTGAGTACAAAGGATGCAGCGTTGCAGCGGATTCGAACAGCA GGAGGTACAGCAGTGGGAACGATACCGTGAAGCTGAAGAAAGGGCTGAACTACTTCATCTGTAGCGTTCCGGGGCACTGTGATGCTGGCTTGAAGCTTTC CATTAGAGCTTTCTGA
AA sequence Show only first row Show all	>Lus10011867 pacid=23169229 polypeptide=Lus10011867 locus=Lus10011867.g ID=Lus10011867.BGIv1.0 annot-version=v1.0 MIQRCGRFRQISRILPRLSSGNCLLQYGEARDCFTSSTSVTPYRSFLSKNTNPETLRRIFTSQRFSTASDASTKVSSPTEDGLVSVIRSTSDELQGPNHV WLNVDERDNPFLKKSGAFLVLAGQLLQDSDVVAMLEKFKLLQQRFSELCVVAIHAGTSVDLAADQARLVDLIAKEYVTFPILLCNKNFSEMEHGACYVLF GDSEDPRIYHKKDLDLGVLHTAVKEFCVRQKQNSDDRNSSLECLKGTWVQHDTPREPLAASYLQNLLLYFPGCVSGDISGGRLFFSDSNHHRIIICDENG EILDCIGSSPGFEDGDFESAKILRPGASFYDDAEDYLYFVDSENHVVRRADLEGRVLDTVYPPPIVSIEKDSLWSKITGKFGFGKTIEPKSEEFDSNSFL FPWHILKSEEDHCFIINRSFETLWVMDLASGEIKDVIKGFRKIMDTCRNLIDDKLSLLKEIPSDWLEQQTSKEIPYATLISSVATCNNHVFVCDANAQKV LKLNRESRACSMFQFRNVGVLGLPYWSANVLEKVYSITPSHESWTDHIQQFSQLPGRTDIEIKVDIPTDTELVEPLHEGCIWRQARGAATEVSGTKTEID SSEKAGVAQKWYDELDNLAFLSPEPETNVEEEDASTSVDDETYKDGKIHIHCSINTSPGLSEVVVYAPLYLRLRRDANIEENKQEKYAARIADILKWGRS SEAMRDLCIQVFLRSGTDIRDLVFVKPLHVRIRLECPDHPKAPDNTKDIILTKSSIDVNFFFSLSTKLEGIEALSYTVGGNSGWSYSVQSWTDGKKFKAG DALSFKYDSSLHDVAAVGMSEYKGCSVAADSNSRRYSSGNDTVKLKKGLNYFICSVPGHCDAGLKLSIRAF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07060		EMB1974	embryo defective 1974, NHL dom...		Lus10011867 [exp]	0	1
AT2G31740			S-adenosyl-L-methionine-depend...		Lus10016656 [exp]	7.3	0.8355
AT5G45610		SUV2	SENSITIVE TO UV 2, protein dim...		Lus10012118 [exp]	8.5	0.7942
AT1G06710			Tetratricopeptide repeat (TPR)...		Lus10025533 [exp]	11.2	0.6943
AT2G45730			eukaryotic initiation factor 3...		Lus10034521 [exp]	14.7	0.7701
AT1G26170			ARM repeat superfamily protein...		Lus10035079 [exp]	14.9	0.8161
AT5G17020		HIT2, ATXPO1, A...	HEAT-INTOLERANT 2, ARABIDOPSIS...		Lus10009572 [exp]	17.5	0.8045
AT1G13630			Tetratricopeptide repeat (TPR)...		Lus10019200 [exp]	21.5	0.6649
AT1G32490		EMB2733, ESP3	ENHANCED SILENCING PHENOTYPE 3...		Lus10033690 [exp]	29.2	0.7994
AT4G35910			Adenine nucleotide alpha hydro...		Lus10018066 [exp]	30.5	0.7925
AT1G42440			unknown protein		Lus10030752 [exp]	31.9	0.8045

Compare expression of checked genes

Lus10011867 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.