Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48870 169 / 8e-56 SAD1 SUPERSENSITIVE TO ABA AND DROUGHT 1, Small nuclear ribonucleoprotein family protein (.1) AT4G30330 47 / 1e-07 Small nuclear ribonucleoprotein family protein (.1) AT2G18740 46 / 4e-07 Small nuclear ribonucleoprotein family protein (.1.2) AT1G21190 42 / 2e-05 Small nuclear ribonucleoprotein family protein (.1) AT1G76860 41 / 2e-05 Small nuclear ribonucleoprotein family protein (.1) AT3G14080 39 / 0.0003 Small nuclear ribonucleoprotein family protein (.1.2) AT3G11500 37 / 0.001 Small nuclear ribonucleoprotein family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022810 [exp] 179 / 1e-59 AT5G48870 167 / 8e-56 SUPERSENSITIVE TO ABA AND DROUGHT 1, Small nuclear ribonucleoprotein family protein (.1) Lus10018034 [exp] 46 / 2e-06 AT4G20990 248 / 1e-81 A. THALIANA ALPHA CARBONIC ANHYDRASE 4, alpha carbonic anhydrase 4 (.1) Lus10042030 [exp] 46 / 3e-06 AT4G20990 313 / 9e-107 A. THALIANA ALPHA CARBONIC ANHYDRASE 4, alpha carbonic anhydrase 4 (.1) Lus10011293 [exp] 41 / 4e-05 AT1G76860 175 / 8e-59 Small nuclear ribonucleoprotein family protein (.1) Lus10040487 [exp] 41 / 4e-05 AT1G76860 175 / 8e-59 Small nuclear ribonucleoprotein family protein (.1) Lus10026326 [exp] 41 / 4e-05 AT1G76860 176 / 4e-59 Small nuclear ribonucleoprotein family protein (.1) Lus10042341 [exp] 40 / 0.0001 AT1G76860 132 / 2e-41 Small nuclear ribonucleoprotein family protein (.1) Lus10017019 [exp] 38 / 0.0003 AT3G11500 150 / 2e-49 Small nuclear ribonucleoprotein family protein (.1) Lus10021342 [exp] 37 / 0.001 AT3G11500 152 / 3e-50 Small nuclear ribonucleoprotein family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G277900 [exp] 175 / 6e-58 AT5G48870 162 / 5e-54 SUPERSENSITIVE TO ABA AND DROUGHT 1, Small nuclear ribonucleoprotein family protein (.1) Potri.009G072500 [exp] 175 / 6e-58 AT5G48870 162 / 5e-54 SUPERSENSITIVE TO ABA AND DROUGHT 1, Small nuclear ribonucleoprotein family protein (.1) Potri.018G096200 [exp] 50 / 8e-09 AT4G30330 166 / 3e-55 Small nuclear ribonucleoprotein family protein (.1) Potri.006G174000 [exp] 50 / 8e-09 AT4G30330 166 / 3e-55 Small nuclear ribonucleoprotein family protein (.1) Potri.002G068800 [exp] 41 / 3e-05 AT1G76860 175 / 1e-58 Small nuclear ribonucleoprotein family protein (.1) Potri.005G191600 [exp] 40 / 4e-05 AT1G76860 176 / 3e-59 Small nuclear ribonucleoprotein family protein (.1) Potri.006G211100 [exp] 37 / 0.0004 AT3G11500 153 / 2e-50 Small nuclear ribonucleoprotein family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0527 [flax] [poplar] Sm-like PF01423 [flax] [poplar] LSM LSM domain
Representative CDS sequence Show only first row Show all	>Lus10011877 pacid=23169259 polypeptide=Lus10011877 locus=Lus10011877.g ID=Lus10011877.BGIv1.0 annot-version=v1.0 ATGGAGAGCTACAAACAAAGCCCAATAACAAAATCACAAGATTCCCCGCCACGTTCGGCGAAAACTGCGTCGTATCACTGTAAGCCGTGGCCACCAAAAC AAAGCCGAGTCCGTTCTGCAACTCCTCCTCTGCCGCGCTTCGGATTCTTCTTCTTCAGCTTGTTGCTTGCTCCCAGTGGAATCGCCATGGCTAACAACCC TTCGCAGCTGCTTCCCTCAGAGCTGATTGATAGGTGCATAGGTTCGAAGATATGGGTGATAATGAAAGGAGACAAGGAGCTTGTGGGAACTCTTAGGGGA TTCGACGTCTACGTCAACATGGTCCTCGAAGACGTCACAGAATATGAAATCACTGCTGAAGGTCGGAGGATAACGAAGCTTGACCAGATATTGCTCAATG GAAACAACATCGCCATTTTGGTTCCTGGTGGTTCTCCTGATCCAGAATGA
AA sequence Show only first row Show all	>Lus10011877 pacid=23169259 polypeptide=Lus10011877 locus=Lus10011877.g ID=Lus10011877.BGIv1.0 annot-version=v1.0 MESYKQSPITKSQDSPPRSAKTASYHCKPWPPKQSRVRSATPPLPRFGFFFFSLLLAPSGIAMANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRG FDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGGSPDPE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G48870		SAD1	SUPERSENSITIVE TO ABA AND DROU...		Lus10011877 [exp]	0	1
AT5G38720			unknown protein		Lus10023232 [exp]	1.0	0.9082
AT3G07590			Small nuclear ribonucleoprotei...		Lus10028022 [exp]	2.4	0.8972
AT3G17300		EMB2786	unknown protein		Lus10037835 [exp]	5.5	0.9052
AT5G64680			unknown protein		Lus10018951 [exp]	5.9	0.8781
AT4G13720			Inosine triphosphate pyrophosp...		Lus10011757 [exp]	9.4	0.8738
AT1G31220			Formyl transferase (.1)		Lus10013428 [exp]	10.4	0.8668
AT5G18540			unknown protein		Lus10033960 [exp]	14.2	0.8325
AT4G21800		QQT2	quatre-quart2, P-loop containi...		Lus10040022 [exp]	14.4	0.8606
AT2G35736			unknown protein		Lus10028935 [exp]	17.5	0.8561
AT5G66240			Transducin/WD40 repeat-like su...		Lus10017157 [exp]	20.0	0.8282

Compare expression of checked genes

Lus10011877 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.