Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20140 792 / 0 RPT2b regulatory particle AAA-ATPase 2b, AAA-type ATPase family protein (.1) AT4G29040 789 / 0 RPT2A regulatory particle AAA-ATPase 2A (.1) AT5G58290 386 / 9e-130 RPT3 regulatory particle triple-A ATPase 3 (.1) AT5G20000 333 / 5e-109 RPT6A AAA-type ATPase family protein (.1) AT5G19990 332 / 9e-109 ATSUG1, RPT6A regulatory particle triple-A ATPase 6A (.1) AT1G09100 328 / 3e-107 RPT5B 26S proteasome AAA-ATPase subunit RPT5B (.1) AT3G05530 328 / 5e-107 ATS6A.2, RPT5A regulatory particle triple-A ATPase 5A (.1) AT1G45000 316 / 1e-102 AAA-type ATPase family protein (.1.2) AT5G43010 314 / 5e-102 RPT4A regulatory particle triple-A ATPase 4A (.1) AT1G53750 311 / 1e-100 RPT1A regulatory particle triple-A 1A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006976 [exp] 783 / 0 AT4G29040 828 / 0.0 regulatory particle AAA-ATPase 2A (.1) Lus10019995 [exp] 779 / 0 AT2G20140 827 / 0.0 regulatory particle AAA-ATPase 2b, AAA-type ATPase family protein (.1) Lus10022834 [exp] 769 / 0 AT2G20140 735 / 0.0 regulatory particle AAA-ATPase 2b, AAA-type ATPase family protein (.1) Lus10001313 [exp] 652 / 0 AT4G29040 673 / 0.0 regulatory particle AAA-ATPase 2A (.1) Lus10015524 [exp] 637 / 0 AT2G20140 659 / 0.0 regulatory particle AAA-ATPase 2b, AAA-type ATPase family protein (.1) Lus10017762 [exp] 335 / 9e-110 AT5G19990 797 / 0.0 regulatory particle triple-A ATPase 6A (.1) Lus10029887 [exp] 332 / 1e-108 AT3G05530 837 / 0.0 regulatory particle triple-A ATPase 5A (.1) Lus10031492 [exp] 332 / 2e-108 AT3G05530 820 / 0.0 regulatory particle triple-A ATPase 5A (.1) Lus10006854 [exp] 318 / 2e-104 AT5G58290 526 / 0.0 regulatory particle triple-A ATPase 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G252600 [exp] 808 / 0 AT4G29040 838 / 0.0 regulatory particle AAA-ATPase 2A (.1) Potri.014G194700 [exp] 796 / 0 AT4G29040 829 / 0.0 regulatory particle AAA-ATPase 2A (.1) Potri.016G028000 [exp] 385 / 3e-129 AT5G58290 781 / 0.0 regulatory particle triple-A ATPase 3 (.1) Potri.006G031000 [exp] 378 / 1e-126 AT5G58290 771 / 0.0 regulatory particle triple-A ATPase 3 (.1) Potri.010G098300 [exp] 336 / 6e-110 AT5G19990 768 / 0.0 regulatory particle triple-A ATPase 6A (.1) Potri.008G144100 [exp] 333 / 4e-109 AT5G19990 741 / 0.0 regulatory particle triple-A ATPase 6A (.1) Potri.013G016800 [exp] 331 / 2e-108 AT3G05530 800 / 0.0 regulatory particle triple-A ATPase 5A (.1) Potri.005G025100 [exp] 331 / 3e-108 AT3G05530 795 / 0.0 regulatory particle triple-A ATPase 5A (.1) Potri.002G031400 [exp] 318 / 2e-103 AT1G45000 745 / 0.0 AAA-type ATPase family protein (.1.2) Potri.005G231700 [exp] 317 / 3e-103 AT1G45000 756 / 0.0 AAA-type ATPase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00004 [flax] [poplar] AAA ATPase family associated with various cellular activities (AAA)
Representative CDS sequence Show only first row Show all	>Lus10011901 pacid=23169253 polypeptide=Lus10011901 locus=Lus10011901.g ID=Lus10011901.BGIv1.0 annot-version=v1.0 ATGGGTCAAGGAGCATCGAGCGGAAACCGGCAGGGACACCCCGGCGACCGGAAGCAGGATGGCGCCGACAAGAAGGAGAAGAAGTTCGAACCCGCTGCAC CGCCGTCTCGCGTCGGGAGGAAGCAGCGCAAGCAGAAAGGCTCAGAAGCCGCTGCCAGGCTTCCCGCGGTGACTCCCGTGACCAAGTGCAAGCTCAGGCT GCTGAAATTGGAGCGAGTGAAGGATTACCTGCTCATGGAGGAAGAGTTCGTGGCCAACCAGGAGAGGCTTAAGCCTCAGGAGGAGAAGGCCGAGGAGGAT CGATCCAAGGTCGACGACTTGAGAGGCTCGCCGATGAGCGTGGGCAACTTGGAGGAGTTGATCGACGAGAATCATGCCATAGTTTCCAGCTCGGTTGGGC CTGAGTATTACGTTGGGATTCTGTCGTTCGTTGATAAGGATCAGCTGGAGCCTGGATGCGCTATCTTGATGCATAATAAGGTTCTCTCCGTGGTTGGTCT TCTTCAAGATGACGTTGATCCAATGGTGTCAGTCATGAAAGTGGAATCGGCTCCACAAGAGTCTTACGCAGACATTGGTGGTTTAGATGCTCAGATACAG GAAATCAAAGAAGCAGTTGAGCTTCCCTTGACTCATCCCGAATTATATGAAGATATCGGTATTAAACCACCGAAGGGTGTCATTTTGTATGGAGAGCCTG GGACTGGCAAGACCCTGCTTGCAAAGGCTGTGGCACATTCAACATCAGCAACTTTTTTACGAGTTGTCGGCAGTGAGTTGATCCAGAAATACTTGGGAGA TGGACCAAAGTTGGTGCGAGAGCTCTTCAGAGTGGCTGACGATCTCTCTCCATCAATCGTCTTCATCGATGAAATCGACGCAGTCGGTACCAAGAGGTAC GATGCCAACTCAGGTGGAGAACGAGAAATCCAGCGGACCATGTTGGAGTTGCTCAATCAGCTGGACGGTTTCGATTCTAGAGGAGACGTGAAAGTCATCC TTGCAACCAACCGGATCGAGAGTCTCGACCCTGCTCTGCTCCGGCCTGGCCGAATCGACAGGAAGATTGAATTCCCTCTTCCCGATATCAAAACAAGGAG ACGCATTTTCATGATACACACATCGAGAATGACATTGGCCGATGATGTCAACTTGGAAGAATTCGTCATGACAAAGGACGAGTTCTCGGGAGCCGATATC AAGGCGATATGTACCGAAGCTGGCTTGCTCGCCCTTCGAGAGCGTCGTATGAAGGTGACGCATGCGGACTTCAAGAAGGCGAAGGAGAAAGTGATGTACA AGAAGAAAGAAGGGGTCCCTGAAGGACTCTACATGCACACCGCCAGCATTCGAATACGGCTGCAGCTCCTCCCACTACTGCGCAGATTGGCATCAAATGT TACTCAGACTTCGCAAGCTTCACTTCTACAGCAACATCCGACGTCGGCATGCTCCTTCTCAACTCTCACGGGCAAGTTCTCAAGTTCCACTCCAGGCATA TCCCGTGTCTCTCTCGCCGTGCCAGGGGGAACTCACAGCCATCCTTGTCACTATGGAGCATCCGGCATCGGCATGCTCTTTCACAACTCTCATGGGCAAG TTCTCAAGTTCCACTCCAGGCATACCCCGTGGTCTCTCTCACTGTGCGAGGGGAAACTCACAACCATCCTTGTCGCTATGGAACGGACGTCGGCTCTTGG TCTTTCACACATTACATTCAAGACAAACAACCTTGATGCTTACTAG
AA sequence Show only first row Show all	>Lus10011901 pacid=23169253 polypeptide=Lus10011901 locus=Lus10011901.g ID=Lus10011901.BGIv1.0 annot-version=v1.0 MGQGASSGNRQGHPGDRKQDGADKKEKKFEPAAPPSRVGRKQRKQKGSEAAARLPAVTPVTKCKLRLLKLERVKDYLLMEEEFVANQERLKPQEEKAEED RSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDDVDPMVSVMKVESAPQESYADIGGLDAQIQ EIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVAHSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRY DANSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFMIHTSRMTLADDVNLEEFVMTKDEFSGADI KAICTEAGLLALRERRMKVTHADFKKAKEKVMYKKKEGVPEGLYMHTASIRIRLQLLPLLRRLASNVTQTSQASLLQQHPTSACSFSTLTGKFSSSTPGI SRVSLAVPGGTHSHPCHYGASGIGMLFHNSHGQVLKFHSRHTPWSLSLCEGKLTTILVAMERTSALGLSHITFKTNNLDAY

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G20140		RPT2b	regulatory particle AAA-ATPase...		Lus10011901 [exp]	0	1
AT5G38660		APE1	acclimation of photosynthesis ...		Lus10003077 [exp]	3.3	0.8395
AT1G63690		ATSPPL2	SIGNAL PEPTIDE PEPTIDASE-LIKE ...		Lus10031104 [exp]	9.2	0.7933
AT3G56740			Ubiquitin-associated (UBA) pro...		Lus10038976 [exp]	10.0	0.8111
AT5G19990		ATSUG1, RPT6A	regulatory particle triple-A A...		Lus10033055 [exp]	21.5	0.7921
AT5G51780	bHLH	bHLH036	basic helix-loop-helix (bHLH) ...		Lus10031676 [exp]	22.3	0.7996
AT3G12570		FYD	FYD (.1.2.3.4)		Lus10023420 [exp]	23.2	0.6943
AT2G42760			unknown protein		Lus10005429 [exp]	23.8	0.7993
AT4G24820			26S proteasome, regulatory sub...		Lus10017932 [exp]	25.6	0.7826
AT4G28540		CKL6, PAPK1	casein kinase I-like 6 (.1)		Lus10033913 [exp]	29.0	0.7584
AT3G14770		SWEET2, AtSWEET...	Nodulin MtN3 family protein (....		Lus10011990 [exp]	29.4	0.7686

Compare expression of checked genes

Lus10011901 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.