Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G03500 160 / 6e-45 GARP Homeodomain-like superfamily protein (.1) AT1G49560 157 / 1e-44 GARP Homeodomain-like superfamily protein (.1) AT4G37180 139 / 1e-37 GARP Homeodomain-like superfamily protein (.1.2) AT1G25550 136 / 8e-37 GARP myb-like transcription factor family protein (.1) AT1G68670 124 / 4e-32 GARP myb-like transcription factor family protein (.1) AT1G13300 124 / 4e-32 GARP HRS1 HYPERSENSITIVITY TO LOW PI-ELICITED PRIMARY ROOT SHORTENING 1, myb-like transcription factor family protein (.1) AT3G25790 113 / 3e-28 GARP myb-like transcription factor family protein (.1) AT2G01060 72 / 5e-14 GARP myb-like HTH transcriptional regulator family protein (.1.2) AT5G05090 72 / 6e-14 GARP Homeodomain-like superfamily protein (.1) AT3G10760 72 / 8e-14 GARP Homeodomain-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027927 [exp] 395 / 1e-137 AT2G03500 57 / 6e-09 Homeodomain-like superfamily protein (.1) Lus10020995 [exp] 314 / 1e-104 AT2G03500 173 / 1e-49 Homeodomain-like superfamily protein (.1) Lus10023857 [exp] 301 / 1e-99 AT2G03500 159 / 2e-44 Homeodomain-like superfamily protein (.1) Lus10009334 [exp] 158 / 3e-45 AT4G37180 213 / 5e-67 Homeodomain-like superfamily protein (.1.2) Lus10035043 [exp] 158 / 1e-44 AT1G68670 281 / 7e-93 myb-like transcription factor family protein (.1) Lus10019639 [exp] 154 / 6e-44 AT4G37180 206 / 4e-64 Homeodomain-like superfamily protein (.1.2) Lus10021699 [exp] 154 / 4e-43 AT1G25550 284 / 6e-94 myb-like transcription factor family protein (.1) Lus10041485 [exp] 129 / 3e-33 AT1G25550 288 / 2e-94 myb-like transcription factor family protein (.1) Lus10034280 [exp] 127 / 3e-33 AT1G25550 266 / 3e-87 myb-like transcription factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G106600 [exp] 305 / 3e-101 AT2G03500 196 / 2e-58 Homeodomain-like superfamily protein (.1) Potri.004G144800 [exp] 303 / 4e-100 AT2G03500 189 / 2e-55 Homeodomain-like superfamily protein (.1) Potri.007G039400 [exp] 191 / 1e-57 AT4G37180 216 / 2e-67 Homeodomain-like superfamily protein (.1.2) Potri.005G134600 [exp] 172 / 2e-50 AT4G37180 214 / 1e-66 Homeodomain-like superfamily protein (.1.2) Potri.008G117500 [exp] 151 / 5e-42 AT1G68670 298 / 4e-99 myb-like transcription factor family protein (.1) Potri.010G128900 [exp] 134 / 1e-35 AT1G25550 277 / 7e-91 myb-like transcription factor family protein (.1) Potri.018G074200 [exp] 125 / 9e-32 AT2G03500 298 / 6e-97 Homeodomain-like superfamily protein (.1) Potri.006G155200 [exp] 114 / 5e-28 AT2G03500 259 / 8e-82 Homeodomain-like superfamily protein (.1) Potri.010G001000 [exp] 74 / 3e-14 AT4G16110 602 / 0.0 response regulator 2 (.1) Potri.018G111300 [exp] 74 / 5e-14 AT2G25180 348 / 3e-111 response regulator 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10012056 pacid=23161440 polypeptide=Lus10012056 locus=Lus10012056.g ID=Lus10012056.BGIv1.0 annot-version=v1.0 ATGGATTCGGTAGCTCCATCTGAGCTGAGCTTCGATTCCAGGACTGTATCGGCCAAGACGATGAGAAACATCCTCCTCCAGAACTCTCCCCCGCCGCCGG CGATCGGAGATTCCGCGGCGGCGAACAAAGTCGACAGCTTGTTGAGTGAGCTGCAGGCCGAAGTGACGAAGATCGACTCGTTTCGGAACCAGCTTCCTCT CTCCATGCTCCTTTTGACCGACGCAATTGCAGCGGTGAAGGAATGGATTGACAGCTCAGCTGGGAAGAAGCAAAAGCAAGTACCAGTTTTGGAGGAGTTC ATCCCGTTGAAGAAAAGCTGTGGAGATGATGAGGATAAAGAATGTAGAGTGGAAGAAGAGATTAAGGATTCATCTAAGGACAAGAGGAGTTGGATGAGCT CTGTCCAGTTATGGAGCTCAGATGATTCTGTAGCTGCAAAGCGAAACCCCGGACTCGAATCTAAGGAGAACAAGAAAGGGAATGGATGTAGAAATGAGGA TGCATTTTCAAGAAAACTGAAGATTGAGGAAAATGGTGGTAGAGATGAGGATTTGGGGGTTCCTGATCTCTCTTTACTAACTCCGGGGATGAAGAATTTC GTGGAGGAATTCATTGCTACTAACTCGAGTCGAAGGGTTTCACAGTCCGATTCTCAGTCCGATGTTAGAGTAGTACCACACCACCACCAGTCACCTCTCC AAGGTTCTAGGAAGCAGAGGAGGTGTTGGTCAGCTGAGCTTCACCGCCGCTTTGTCAATGCCTTGCAGCAACTTGGAGGCTCTCAAGCTGCTACACCAAA GCAGATAAGAGAAATCATGCAAGTTGATGGCTTGACCAATGATGAAGTCAAGAGCCATCTGCAGAAATATCGACTTCATACGCGAAGAATGACAAGTGCC CCTGCAAACCAATCTCTAGTTGTTTTGGGAGGAGGCTTATGGATGTCGTCGCAAGAACAACATAGAGAGTGTTCAAAGGCTGCTAGTTCCCAGTCTAATT CTCCTCAAGGTCCCCTCCAGTTCAGTCGTACCCTAACGGGAGGAGACAGCATGGAAGATGATCACGAGGACGATGCAAAATCGGAGAACTACAACAGCTG GAAATGCCATACTCAAAGACCAGGGAGAGTTGGTGTATAG
AA sequence Show only first row Show all	>Lus10012056 pacid=23161440 polypeptide=Lus10012056 locus=Lus10012056.g ID=Lus10012056.BGIv1.0 annot-version=v1.0 MDSVAPSELSFDSRTVSAKTMRNILLQNSPPPPAIGDSAAANKVDSLLSELQAEVTKIDSFRNQLPLSMLLLTDAIAAVKEWIDSSAGKKQKQVPVLEEF IPLKKSCGDDEDKECRVEEEIKDSSKDKRSWMSSVQLWSSDDSVAAKRNPGLESKENKKGNGCRNEDAFSRKLKIEENGGRDEDLGVPDLSLLTPGMKNF VEEFIATNSSRRVSQSDSQSDVRVVPHHHQSPLQGSRKQRRCWSAELHRRFVNALQQLGGSQAATPKQIREIMQVDGLTNDEVKSHLQKYRLHTRRMTSA PANQSLVVLGGGLWMSSQEQHRECSKAASSQSNSPQGPLQFSRTLTGGDSMEDDHEDDAKSENYNSWKCHTQRPGRVGV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G03500	GARP		Homeodomain-like superfamily p...		Lus10012056 [exp]	0	1
AT1G75080	BZR	BZR1	BRASSINAZOLE-RESISTANT 1, Bras...		Lus10010795 [exp]	1.4	0.7993
AT2G24290			Protein of unknown function (D...		Lus10019053 [exp]	2.4	0.7887
AT4G25315			Expressed protein (.1.2)		Lus10014065 [exp]	4.2	0.7224
AT1G14390			Leucine-rich repeat protein ki...		Lus10030785 [exp]	5.3	0.7390
AT3G04910		ATWNK1, ZIK4, W...	with no lysine (K) kinase 1 (....		Lus10020236 [exp]	7.3	0.7172
AT3G17090			Protein phosphatase 2C family ...		Lus10017061 [exp]	8.0	0.6926
AT1G22790			unknown protein		Lus10028733 [exp]	8.8	0.7113
AT1G76890	Trihelix	AT-GT2, GT2	Duplicated homeodomain-like su...		Lus10029778 [exp]	11.6	0.7414
AT3G62980		AtTIR1, TIR1	TRANSPORT INHIBITOR RESPONSE 1...		Lus10018425 [exp]	15.2	0.7147
AT3G54030			Protein kinase protein with te...		Lus10027743 [exp]	16.7	0.7374

Compare expression of checked genes

Lus10012056 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.