Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07475 142 / 5e-43 Cupredoxin superfamily protein (.1) AT2G32300 96 / 2e-24 UCC1 uclacyanin 1 (.1) AT3G60270 94 / 2e-24 Cupredoxin superfamily protein (.1) AT5G53870 89 / 5e-21 AtENODL1 early nodulin-like protein 1 (.1) AT2G25060 84 / 2e-20 AtENODL14 early nodulin-like protein 14 (.1) AT4G31840 82 / 6e-20 AtENODL15 early nodulin-like protein 15 (.1) AT2G44790 81 / 3e-19 UCC2 uclacyanin 2 (.1) AT1G72230 80 / 6e-19 Cupredoxin superfamily protein (.1) AT3G60280 80 / 1e-18 UCC3 uclacyanin 3 (.1) AT3G20570 79 / 2e-18 AtENODL9 early nodulin-like protein 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007401 [exp] 217 / 4e-69 AT1G51690 460 / 7e-159 protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform (.1.2.3) Lus10008720 [exp] 102 / 1e-27 AT1G72230 140 / 2e-42 Cupredoxin superfamily protein (.1) Lus10020944 [exp] 100 / 7e-27 AT1G72230 141 / 1e-42 Cupredoxin superfamily protein (.1) Lus10027143 [exp] 100 / 3e-26 AT2G32300 137 / 9e-40 uclacyanin 1 (.1) Lus10012165 [exp] 88 / 6e-22 AT5G07475 89 / 1e-22 Cupredoxin superfamily protein (.1) Lus10007582 [exp] 92 / 7e-22 AT4G35110 120 / 2e-29 Arabidopsis phospholipase-like protein (PEARLI 4) family (.1), Arabidopsis phospholipase-like protein (PEARLI 4) family (.2), Arabidopsis phospholipase-like protein (PEARLI 4) family (.3), Arabidopsis phospholipase-like protein (PEARLI 4) family (.4) Lus10026064 [exp] 81 / 2e-19 AT5G15350 113 / 4e-32 early nodulin-like protein 17 (.1) Lus10002614 [exp] 79 / 4e-19 AT2G32300 100 / 1e-26 uclacyanin 1 (.1) Lus10011433 [exp] 80 / 8e-19 AT1G79800 124 / 4e-36 early nodulin-like protein 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G150300 [exp] 171 / 9e-55 AT5G07475 178 / 2e-57 Cupredoxin superfamily protein (.1) Potri.001G080700 [exp] 168 / 1e-53 AT5G07475 164 / 1e-51 Cupredoxin superfamily protein (.1) Potri.014G049600 [exp] 99 / 2e-26 AT3G60270 111 / 8e-31 Cupredoxin superfamily protein (.1) Potri.007G120200 [exp] 97 / 4e-25 AT2G32300 118 / 3e-32 uclacyanin 1 (.1) Potri.002G101300 [exp] 89 / 2e-22 AT1G72230 131 / 6e-39 Cupredoxin superfamily protein (.1) Potri.002G101200 [exp] 88 / 2e-21 AT1G72230 129 / 2e-37 Cupredoxin superfamily protein (.1) Potri.009G136200 [exp] 81 / 2e-19 AT5G26330 88 / 4e-22 Cupredoxin superfamily protein (.1) Potri.006G264600 [exp] 80 / 5e-19 AT2G25060 184 / 9e-60 early nodulin-like protein 14 (.1) Potri.003G183300 [exp] 80 / 6e-19 AT5G15350 123 / 1e-35 early nodulin-like protein 17 (.1) Potri.002G161300 [exp] 79 / 1e-18 AT5G26330 146 / 5e-45 Cupredoxin superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0026 [flax] [poplar] CU_oxidase PF02298 [flax] [poplar] Cu_bind_like Plastocyanin-like domain
Representative CDS sequence Show only first row Show all	>Lus10012085 pacid=23146017 polypeptide=Lus10012085 locus=Lus10012085.g ID=Lus10012085.BGIv1.0 annot-version=v1.0 ATGGCTGACCCGAATTCGCTTTGTTTTAATCTCCTAGCCGCCGCCGTTGTTCTCAGCCTAGCCTTCTCATCTTGCGGCGCCACAACTTACACGGTCGGAG ACAATTCAGGTTGGGACATAAGCAGTGATCTCGACAGTTGGGCTCAGGATAAAACCTTCTACGTCGGAGATGCTCTCTTGTTTCAGTACAAATCCTCAGA GACAGTAGAAGAAGTGAACAAAGCATCTTTCGACGGCTGCAATACGACGGACGTAATGAAATCGTTCAACGACGGGAATACGACGGTGGAATTGGACAGT GGTGGACCCTGGTATTTCATCTGTGGGAACAAGTTGTACTGCTTTGGAGGGATGAAGCTCCAGGTGGACGTCAAAGGTAATCAGACTGTTGCAGATTCAC CAATTGGTTCCCCTGAGGGGCAGCCTGCAAACCCTTCTTCCAAGACCGACTTCCCCTCTTCTTCAGCTTTTGTTCATCGCAGCACTGAGACTCTTGTGAT CATTGTTGGTGGAAACCCAAGTTGA
AA sequence Show only first row Show all	>Lus10012085 pacid=23146017 polypeptide=Lus10012085 locus=Lus10012085.g ID=Lus10012085.BGIv1.0 annot-version=v1.0 MADPNSLCFNLLAAAVVLSLAFSSCGATTYTVGDNSGWDISSDLDSWAQDKTFYVGDALLFQYKSSETVEEVNKASFDGCNTTDVMKSFNDGNTTVELDS GGPWYFICGNKLYCFGGMKLQVDVKGNQTVADSPIGSPEGQPANPSSKTDFPSSSAFVHRSTETLVIIVGGNPS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G07475			Cupredoxin superfamily protein...		Lus10012085 [exp]	0	1
AT4G24130			Protein of unknown function, D...		Lus10017330 [exp]	1.4	0.9831
					Lus10034812 [exp]	2.0	0.9811
AT4G02830			unknown protein		Lus10042573 [exp]	2.2	0.9754
AT1G64000	WRKY	ATWRKY56, WRKY5...	WRKY DNA-binding protein 56 (....		Lus10007906 [exp]	2.6	0.9740
					Lus10018643 [exp]	3.0	0.9759
AT1G49960			Xanthine/uracil permease famil...		Lus10033773 [exp]	3.5	0.9748
AT2G36290			alpha/beta-Hydrolases superfam...		Lus10028860 [exp]	3.6	0.9650
AT5G55180			O-Glycosyl hydrolases family 1...		Lus10040600 [exp]	4.0	0.9586
AT1G03700			Uncharacterised protein family...		Lus10011179 [exp]	4.5	0.9706
AT5G41040			HXXXD-type acyl-transferase fa...		Lus10032554 [exp]	4.5	0.9758

Compare expression of checked genes

Lus10012085 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.