Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37650 464 / 3e-160 GRAS SGR7, SHR SHORT ROOT, SHOOT GRAVITROPISM 7, GRAS family transcription factor (.1) AT3G49950 172 / 1e-48 GRAS GRAS family transcription factor (.1) AT5G48150 172 / 4e-48 GRAS PAT1 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) AT2G04890 170 / 6e-48 GRAS SCL21 SCARECROW-like 21 (.1) AT1G50600 171 / 1e-46 GRAS SCL5 scarecrow-like 5 (.1) AT1G21450 162 / 1e-43 GRAS SCL1 SCARECROW-like 1 (.1) AT3G03450 154 / 6e-41 GRAS RGL2 RGA-like 2 (.1) AT1G66350 153 / 7e-41 GRAS RGL1 RGA-like 1 (.1) AT2G01570 148 / 1e-38 GRAS RGA1 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) AT4G17230 139 / 9e-36 GRAS SCL13 SCARECROW-like 13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025200 [exp] 737 / 0 AT4G37650 484 / 8e-169 SHORT ROOT, SHOOT GRAVITROPISM 7, GRAS family transcription factor (.1) Lus10011542 [exp] 528 / 0 AT4G37650 499 / 3e-172 SHORT ROOT, SHOOT GRAVITROPISM 7, GRAS family transcription factor (.1) Lus10019281 [exp] 526 / 0 AT4G37650 509 / 2e-177 SHORT ROOT, SHOOT GRAVITROPISM 7, GRAS family transcription factor (.1) Lus10019361 [exp] 390 / 2e-131 AT4G37650 403 / 5e-136 SHORT ROOT, SHOOT GRAVITROPISM 7, GRAS family transcription factor (.1) Lus10016596 [exp] 167 / 9e-46 AT5G48150 624 / 0.0 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Lus10012554 [exp] 168 / 4e-45 AT1G66350 318 / 1e-99 RGA-like 1 (.1) Lus10041540 [exp] 167 / 5e-45 AT1G66350 317 / 2e-100 RGA-like 1 (.1) Lus10012323 [exp] 164 / 2e-44 AT5G48150 659 / 0.0 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Lus10018498 [exp] 160 / 1e-43 AT3G49950 347 / 3e-116 GRAS family transcription factor (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G063300 [exp] 502 / 3e-175 AT4G37650 576 / 0.0 SHORT ROOT, SHOOT GRAVITROPISM 7, GRAS family transcription factor (.1) Potri.017G019900 [exp] 405 / 2e-138 AT4G37650 405 / 1e-137 SHORT ROOT, SHOOT GRAVITROPISM 7, GRAS family transcription factor (.1) Potri.007G132000 [exp] 397 / 2e-135 AT4G37650 410 / 4e-140 SHORT ROOT, SHOOT GRAVITROPISM 7, GRAS family transcription factor (.1) Potri.017G041500 [exp] 180 / 3e-51 AT3G49950 370 / 2e-125 GRAS family transcription factor (.1) Potri.001G361700 [exp] 176 / 5e-49 AT1G50600 637 / 0.0 scarecrow-like 5 (.1) Potri.014G164400 [exp] 176 / 7e-49 AT5G48150 716 / 0.0 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Potri.005G186500 [exp] 175 / 2e-48 AT1G21450 685 / 0.0 SCARECROW-like 1 (.1) Potri.002G073400 [exp] 175 / 3e-48 AT1G21450 707 / 0.0 SCARECROW-like 1 (.1) Potri.007G119000 [exp] 172 / 4e-48 AT3G49950 369 / 7e-125 GRAS family transcription factor (.1) Potri.001G409500 [exp] 160 / 7e-43 AT5G48150 518 / 3e-180 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03514 [flax] [poplar] GRAS GRAS domain family
Representative CDS sequence Show only first row Show all	>Lus10012089 pacid=23146011 polypeptide=Lus10012089 locus=Lus10012089.g ID=Lus10012089.BGIv1.0 annot-version=v1.0 ATGGACACTTTCTTTTACAGATTAGTCAGCCCCCAACATCAGCAGCAATACGATCACGATCAGCACTACCACTACCAGCACCAATCTGATCAATCTCTCA ACTCCACCACCTTAACTACTACTTCCACTAGCTCTCATTCCAACCAAACCCAAACTCAACAATGCTTCCCCATTTTCATGGATCATCATCACGACTTCTC CTCCTCCAAACACCCAACCCCAACCACCGTCTCTACCCCGTCCGAACTTTTCACCCTCGTTAACCCGGCCCCACAACAGCCTCTACACCTCCACTTCTCC AAGTCATGGGCATCCCACCTCCTCCTCCAAGCCGCCAAAGCCATCGCCGACCATAACACCCACCTTCTCCACAAACTCATGTGGGCCCTCAACGAGCTCG CCTCTCCCTACGGCGATACCCAACAGAAGCTTGCTTCTTACTTTCTCCAGGCCATCTTCAGCCGCCTCGCCAACTCTGGACGCCGCTCCCTCCTCACGCT TTCCTCAGCCGCCGACCGAATCTCCTCCTTCGACTCCACCCGGAAGCTCCTCCTCAAATTCCAGGAAGTTTGCCCCTGGACAACCTTCGGCCACGTGTCC TCCAATGGTGCCATCCTCGAATCCCTAGGCGCTCATCCCAAACTCCACGTCCTTGATTTCAGCAACACCTTTTGCACCCAGTGGCCCACCTTCCTCGAAT CCCTCGCCACCCGCTATCACGACACCCCTCACCTCCGCCTCACAACCGTCGTCACCGGCGGCGGTGGAGGTGAGAGGGTGATGAACGAGATCTCCTGCCG GATGGAGAAATTCGCACGGCTGATGGGGGTTCCGTTCAAATTCGACGTTATTCACCACTCTGGCGACCTCTCTGAACTCAATTTCGACGGATTGGGGATT CAGGACGACGAAGCACTGGCGATTAATTGCATTTGCTCGCTTCGATCCGTGTCGAGGAAAAGGCGGGATTACGTGTTCTCGAAGTTTAGGCAATTGCGAC CGAGGATTGTGACGATGGTGGAGGAGGAGGCGGATCTGGACGACGGCGGTGCCGGTTTCGTAAGAGGGTTTGAGGAGTGCTTGGGATGGTTTAGTGTTTA TTTTGAGTGCTTGGATGAGAGCTTTCCGAAGACGAGCAACGAGAGATTGATGCTAGAGAGAAGAGCTGGGAGGGGTATTTTGGATCTTGTAGCGTGCTCG CCGGAGGACTCGACGGAGAGAAGGGAGACGGCAGAGCGGTGGTCAGCGCGGTTGCGGGGTAGCGGATTCGTTGGGGTACGATTTAGCGAGGAAGTTAATG ATGATGTGAAGGCGTTGTTGAGGAGATATAGGGAAAGATGGTCAATGAGGCAGGTTGGTGGCGGAGGAGACGGCGGCGGACTGTTCTTGTGCTGGAAGGA TCAGCCAGTGGTTTGGGTGAGTGCATGGAGGCCTATTGAAGACTGA
AA sequence Show only first row Show all	>Lus10012089 pacid=23146011 polypeptide=Lus10012089 locus=Lus10012089.g ID=Lus10012089.BGIv1.0 annot-version=v1.0 MDTFFYRLVSPQHQQQYDHDQHYHYQHQSDQSLNSTTLTTTSTSSHSNQTQTQQCFPIFMDHHHDFSSSKHPTPTTVSTPSELFTLVNPAPQQPLHLHFS KSWASHLLLQAAKAIADHNTHLLHKLMWALNELASPYGDTQQKLASYFLQAIFSRLANSGRRSLLTLSSAADRISSFDSTRKLLLKFQEVCPWTTFGHVS SNGAILESLGAHPKLHVLDFSNTFCTQWPTFLESLATRYHDTPHLRLTTVVTGGGGGERVMNEISCRMEKFARLMGVPFKFDVIHHSGDLSELNFDGLGI QDDEALAINCICSLRSVSRKRRDYVFSKFRQLRPRIVTMVEEEADLDDGGAGFVRGFEECLGWFSVYFECLDESFPKTSNERLMLERRAGRGILDLVACS PEDSTERRETAERWSARLRGSGFVGVRFSEEVNDDVKALLRRYRERWSMRQVGGGGDGGGLFLCWKDQPVVWVSAWRPIED

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G37650	GRAS	SGR7, SHR	SHORT ROOT, SHOOT GRAVITROPISM...		Lus10012089 [exp]	0	1
AT3G04580		EIN4	ETHYLENE INSENSITIVE 4, Signal...		Lus10042549 [exp]	1.0	0.8541
AT4G13830		J20	DNAJ-like 20 (.1.2)		Lus10002355 [exp]	2.0	0.8248
AT4G08330			unknown protein		Lus10018170 [exp]	4.2	0.7641
AT2G25490		FBL6, EBF1	EIN3-binding F box protein 1 (...		Lus10030102 [exp]	4.5	0.8496
AT2G17420		NTR2, ATNTRA, N...	NADPH-DEPENDENT THIOREDOXIN RE...		Lus10025845 [exp]	5.5	0.7690
AT2G43090			Aconitase/3-isopropylmalate de...		Lus10007488 [exp]	7.1	0.8287
AT1G21200	Trihelix		sequence-specific DNA binding ...		Lus10029777 [exp]	7.3	0.8069
AT2G25490		FBL6, EBF1	EIN3-binding F box protein 1 (...		Lus10002165 [exp]	8.4	0.8203
AT3G21360			2-oxoglutarate (2OG) and Fe(II...		Lus10038283 [exp]	8.8	0.8096
AT3G10870		ATMES17, MES17	ARABIDOPSIS THALIANA METHYL ES...		Lus10034253 [exp]	9.4	0.8079

Compare expression of checked genes

Lus10012089 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.