Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G67580 158 / 6e-47 MYB ATTBP3, TRB2, ATTRB2 TELOMERE-BINDING PROTEIN 3, TELOMERE REPEAT BINDING FACTOR 2, Homeodomain-like/winged-helix DNA-binding family protein (.1.2) AT1G49950 151 / 2e-44 MYB ATTRB1, TRB1 telomere repeat binding factor 1 (.1.2.3) AT3G49850 143 / 4e-41 MYB TBP2, TRB3, ATTRB3 TELOMERE-BINDING PROTEIN 2, telomere repeat binding factor 3 (.1) AT1G17520 97 / 1e-23 MYB Homeodomain-like/winged-helix DNA-binding family protein (.1) AT1G72740 86 / 1e-19 MYB Homeodomain-like/winged-helix DNA-binding family protein (.1.2) AT1G15720 45 / 3e-05 MYB TRFL5 TRF-like 5 (.1) AT1G17460 45 / 3e-05 MYB TRFL3 TRF-like 3 (.1.2) AT1G72650 44 / 8e-05 MYB TRFL6 TRF-like 6 (.1.2) AT5G58340 42 / 0.0003 MYB myb-like HTH transcriptional regulator family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025203 [exp] 349 / 2e-122 AT1G49950 175 / 3e-53 telomere repeat binding factor 1 (.1.2.3) Lus10011546 [exp] 211 / 1e-67 AT5G67580 199 / 2e-62 TELOMERE-BINDING PROTEIN 3, TELOMERE REPEAT BINDING FACTOR 2, Homeodomain-like/winged-helix DNA-binding family protein (.1.2) Lus10019260 [exp] 206 / 2e-65 AT5G67580 201 / 5e-63 TELOMERE-BINDING PROTEIN 3, TELOMERE REPEAT BINDING FACTOR 2, Homeodomain-like/winged-helix DNA-binding family protein (.1.2) Lus10033775 [exp] 106 / 8e-26 AT5G15340 635 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10014653 [exp] 105 / 1e-25 AT5G15340 634 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10040111 [exp] 94 / 1e-22 AT1G72740 135 / 6e-38 Homeodomain-like/winged-helix DNA-binding family protein (.1.2) Lus10030935 [exp] 94 / 4e-22 AT1G72740 171 / 5e-51 Homeodomain-like/winged-helix DNA-binding family protein (.1.2) Lus10027621 [exp] 92 / 4e-22 AT1G72740 107 / 1e-27 Homeodomain-like/winged-helix DNA-binding family protein (.1.2) Lus10024200 [exp] 54 / 5e-08 AT1G15720 65 / 5e-11 TRF-like 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G004900 [exp] 202 / 3e-64 AT5G67580 224 / 6e-72 TELOMERE-BINDING PROTEIN 3, TELOMERE REPEAT BINDING FACTOR 2, Homeodomain-like/winged-helix DNA-binding family protein (.1.2) Potri.007G005000 [exp] 197 / 9e-62 AT5G67580 212 / 1e-66 TELOMERE-BINDING PROTEIN 3, TELOMERE REPEAT BINDING FACTOR 2, Homeodomain-like/winged-helix DNA-binding family protein (.1.2) Potri.001G292700 [exp] 158 / 4e-47 AT1G49950 273 / 2e-91 telomere repeat binding factor 1 (.1.2.3) Potri.009G087000 [exp] 148 / 3e-43 AT1G49950 277 / 5e-93 telomere repeat binding factor 1 (.1.2.3) Potri.018G066300 [exp] 114 / 2e-30 AT1G72740 186 / 6e-58 Homeodomain-like/winged-helix DNA-binding family protein (.1.2) Potri.006G147400 [exp] 110 / 7e-29 AT1G17520 209 / 2e-66 Homeodomain-like/winged-helix DNA-binding family protein (.1) Potri.013G154500 [exp] 51 / 4e-07 AT5G58340 88 / 4e-18 myb-like HTH transcriptional regulator family protein (.1.2) Potri.006G054401 [exp] 43 / 0.0001 AT1G68030 104 / 1e-24 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.016G053300 [exp] 41 / 0.0006 AT1G68030 115 / 7e-28 RING/FYVE/PHD zinc finger superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00538 [flax] [poplar] Linker_histone linker histone H1 and H5 family CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10012092 pacid=23146021 polypeptide=Lus10012092 locus=Lus10012092.g ID=Lus10012092.BGIv1.0 annot-version=v1.0 ATGCGTGGTCCTAAGCAGAGGTGGACAGCAGAAGAGGAGGCGGCTCTTAAAGCTGGAATTCGTAAGCATGGCACTGGTAAATGGCGCACAATACTTATGG ACCCCGACTTCGGTCCAGTGTTGCGCATCCGCTCCAATGTTGATCTCAAAGATAAATGGAGAAACATTAAGGTGATGGCCATTTGGGGTTCTAGGCACAA GGCAAAGCTTGCACTTAACACAACTCCACACAACCCTGAACTTGAGCAGAGTTTGAATGACCTACTTCCAAAGTTGGATAGTTTGATAGTAGAAGCTATT TCCACTTTGAAGGAGCCAGAGGGTTCTGACGAAGCTTCAATTGCTACTTACATAGAGGATAAACAATGCGGCGTACCAAATCTCAGAAAGCTATTGGCAA GAAAACTAAAGCTTTTAACAGCCACTGGAAAGTTAATCAAGGTAAAACAACAGTACAGAATTTCACCAGGCTCCACAGCATCCGAGGGAACAAATGGGAG TCCCTTTCTAGTTGTAGATGGAAAGCAGAACACATCAAATGTAGATAAGAATAGCAGCAAAATACAGAGCATGTTTCATGTTGAGCAAGAATTACATAGA ATACAAGGTATGACTGCAGCAGAAGCGGCTGCTGTCGCAGTTAAGGCAATTGCAGAAGCAGAGTTGGCAATTGCGGAGGCTGAAGAGGCTGCCAGGAAGG CTGAGAGTGCAGAGGCCGAAGCAGAAGCATGCCATGTCTTTGCAGAAGCTGCTGTTCAAGCATTTAGATAA
AA sequence Show only first row Show all	>Lus10012092 pacid=23146021 polypeptide=Lus10012092 locus=Lus10012092.g ID=Lus10012092.BGIv1.0 annot-version=v1.0 MRGPKQRWTAEEEAALKAGIRKHGTGKWRTILMDPDFGPVLRIRSNVDLKDKWRNIKVMAIWGSRHKAKLALNTTPHNPELEQSLNDLLPKLDSLIVEAI STLKEPEGSDEASIATYIEDKQCGVPNLRKLLARKLKLLTATGKLIKVKQQYRISPGSTASEGTNGSPFLVVDGKQNTSNVDKNSSKIQSMFHVEQELHR IQGMTAAEAAAVAVKAIAEAELAIAEAEEAARKAESAEAEAEACHVFAEAAVQAFR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G49950	MYB	ATTRB1, TRB1	telomere repeat binding factor...		Lus10012092 [exp]	0	1
AT1G01040		SIN1, EMB76, EM...	SHORT INTEGUMENTS 1, EMBRYO DE...		Lus10005141 [exp]	1.4	0.8936
AT1G66980		GDPDL2, SNC4	Glycerophosphodiester phosphod...		Lus10022359 [exp]	2.2	0.8670
AT2G31730	bHLH		basic helix-loop-helix (bHLH) ...		Lus10024071 [exp]	2.2	0.9036
AT1G34050			Ankyrin repeat family protein ...		Lus10018757 [exp]	3.5	0.8716
AT3G11570		TBL8	TRICHOME BIREFRINGENCE-LIKE 8 ...		Lus10000250 [exp]	4.2	0.8748
AT5G22260		MS1	male sterility 1, RING/FYVE/PH...		Lus10013251 [exp]	6.7	0.8458
AT1G47710			Serine protease inhibitor (SER...		Lus10034364 [exp]	8.4	0.8428
AT1G03495			HXXXD-type acyl-transferase fa...		Lus10014077 [exp]	8.8	0.8385
AT2G26920			Ubiquitin-associated/translati...		Lus10041640 [exp]	9.2	0.8111
AT5G63980		SUPO1, RON1, AL...	suppressors of PIN1 overexpres...		Lus10037677 [exp]	9.5	0.8107

Compare expression of checked genes

Lus10012092 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.