Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45580 174 / 2e-53 GARP Homeodomain-like superfamily protein (.1) AT3G24120 146 / 4e-42 GARP Homeodomain-like superfamily protein (.1.2) AT4G13640 144 / 4e-41 GARP UNE16 unfertilized embryo sac 16, Homeodomain-like superfamily protein (.1.2) AT1G79430 136 / 9e-38 GARP WDY, APL WOODY, ALTERED PHLOEM DEVELOPMENT, Homeodomain-like superfamily protein (.1.2) AT3G12730 130 / 2e-36 GARP Homeodomain-like superfamily protein (.1) AT5G18240 128 / 2e-34 GARP MYR1, ATMYR1 ARABIDOPSIS MYB-RELATED PROTEIN 1, myb-related protein 1 (.1.2.3.4.5) AT3G04030 124 / 6e-33 GARP Homeodomain-like superfamily protein (.1.2.3) AT1G69580 117 / 1e-30 GARP Homeodomain-like superfamily protein (.1.2) AT2G01060 108 / 1e-27 GARP myb-like HTH transcriptional regulator family protein (.1.2) AT2G06020 94 / 3e-22 GARP Homeodomain-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010404 [exp] 386 / 2e-136 AT5G45580 216 / 9e-70 Homeodomain-like superfamily protein (.1) Lus10016676 [exp] 149 / 7e-43 AT4G13640 380 / 2e-133 unfertilized embryo sac 16, Homeodomain-like superfamily protein (.1.2) Lus10007132 [exp] 149 / 1e-42 AT4G13640 390 / 3e-137 unfertilized embryo sac 16, Homeodomain-like superfamily protein (.1.2) Lus10001754 [exp] 135 / 2e-36 AT1G79430 292 / 2e-95 WOODY, ALTERED PHLOEM DEVELOPMENT, Homeodomain-like superfamily protein (.1.2) Lus10001844 [exp] 135 / 3e-36 AT1G79430 286 / 3e-93 WOODY, ALTERED PHLOEM DEVELOPMENT, Homeodomain-like superfamily protein (.1.2) Lus10037169 [exp] 129 / 2e-35 AT1G69580 252 / 9e-83 Homeodomain-like superfamily protein (.1.2) Lus10036758 [exp] 125 / 8e-34 AT1G69580 258 / 9e-85 Homeodomain-like superfamily protein (.1.2) Lus10039123 [exp] 122 / 3e-33 AT3G24120 173 / 5e-53 Homeodomain-like superfamily protein (.1.2) Lus10020264 [exp] 124 / 1e-32 AT3G04030 441 / 4e-154 Homeodomain-like superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G133400 [exp] 201 / 1e-63 AT5G45580 220 / 2e-71 Homeodomain-like superfamily protein (.1) Potri.003G100100 [exp] 194 / 7e-61 AT5G45580 240 / 6e-79 Homeodomain-like superfamily protein (.1) Potri.001G314800 [exp] 150 / 2e-43 AT4G13640 345 / 2e-119 unfertilized embryo sac 16, Homeodomain-like superfamily protein (.1.2) Potri.017G054800 [exp] 146 / 5e-42 AT4G13640 338 / 6e-117 unfertilized embryo sac 16, Homeodomain-like superfamily protein (.1.2) Potri.013G060200 [exp] 133 / 5e-36 AT3G04030 462 / 3e-162 Homeodomain-like superfamily protein (.1.2.3) Potri.008G081800 [exp] 131 / 8e-36 AT1G79430 335 / 6e-114 WOODY, ALTERED PHLOEM DEVELOPMENT, Homeodomain-like superfamily protein (.1.2) Potri.019G032700 [exp] 129 / 1e-34 AT3G04030 449 / 2e-157 Homeodomain-like superfamily protein (.1.2.3) Potri.010G174100 [exp] 128 / 1e-34 AT1G79430 356 / 4e-122 WOODY, ALTERED PHLOEM DEVELOPMENT, Homeodomain-like superfamily protein (.1.2) Potri.016G001200 [exp] 124 / 2e-33 AT4G13640 193 / 5e-60 unfertilized embryo sac 16, Homeodomain-like superfamily protein (.1.2) Potri.011G023600 [exp] 119 / 4e-32 AT1G79430 180 / 1e-54 WOODY, ALTERED PHLOEM DEVELOPMENT, Homeodomain-like superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10012142 pacid=23154967 polypeptide=Lus10012142 locus=Lus10012142.g ID=Lus10012142.BGIv1.0 annot-version=v1.0 ATGGCTGCATTCGGCGGCGGCGGAGGGATGTACCAGTACGAGAATGGAGTGGTGATGACCAGAGACCCGAAGCCGAGGCTTAGATGGACGGCCGATCTTC ACGACCGGTTCGTCGACGCCGTTGCGAAACTCGGTGGTCCTGAGAAGGCGACGCCGAAGTCTGTGCTGAGATTGATGGGGTTGAAAGGGTTGACCTTGTA TCATTTGAAGAGTCATTTACAGAAATACAGGCTGGGACAGCAAGGTAATAACAAGCATAGCAACAGTCCTGGACAGAGCAGCAGAGACATCCATAGCAAT GGATCTTCTTCATACATACATTTCAACAACCATTCATCAAACGGGGGAGCAAGTACCAGTTCATCCATATCATCCAGAGACAATGAACCAGGAGGAGATC TCCATAATGCACTGAAACCGCATATCGAAGTCCAGAAAAGACTCGAAGAACAGCTCGAAGTACAACAGAAACTGCAAATGAGGATAGAGGCACAAGGAAA GTACTTACAAGCCATACTAGAGAAAGCTCAGAAGAGCCTTTCGATGGCCATGGAATCTTCGACAGGTGGCGGAGGCTGCAATCTCGACGCGACGAGGGCG CAGCTGACGGACTTCAACGTGGCACTGTCGACACTGATTCGGATGAACAATAAGAATGAAGAAGAAGATCAAGAAGGTGGTGTTGATGATGGTCTGAAGC ATCTGTACTTGGGCAACAATGGCGGTGGAGGGGAAGAAGTGCAGTTTGATTTGAATGTTAATAATGGTGGTGTTCTTGGTGGGAATAATAATGGTGATGA TGGGTCTGATCAGTTGGAACTTAGGATGGTTTCATATGGGATTTCTTGA
AA sequence Show only first row Show all	>Lus10012142 pacid=23154967 polypeptide=Lus10012142 locus=Lus10012142.g ID=Lus10012142.BGIv1.0 annot-version=v1.0 MAAFGGGGGMYQYENGVVMTRDPKPRLRWTADLHDRFVDAVAKLGGPEKATPKSVLRLMGLKGLTLYHLKSHLQKYRLGQQGNNKHSNSPGQSSRDIHSN GSSSYIHFNNHSSNGGASTSSSISSRDNEPGGDLHNALKPHIEVQKRLEEQLEVQQKLQMRIEAQGKYLQAILEKAQKSLSMAMESSTGGGGCNLDATRA QLTDFNVALSTLIRMNNKNEEEDQEGGVDDGLKHLYLGNNGGGGEEVQFDLNVNNGGVLGGNNNGDDGSDQLELRMVSYGIS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G45580	GARP		Homeodomain-like superfamily p...		Lus10012142 [exp]	0	1
AT5G10720		CKI2, AHK5	CYTOKININ INDEPENDENT 2, histi...		Lus10000137 [exp]	3.3	0.9090
AT5G10720		CKI2, AHK5	CYTOKININ INDEPENDENT 2, histi...		Lus10020115 [exp]	3.7	0.9385
AT4G12300		CYP706A4	"cytochrome P450, family 706, ...		Lus10004331 [exp]	5.5	0.9308
					Lus10024121 [exp]	6.7	0.9294
AT5G20110			Dynein light chain type 1 fami...		Lus10014484 [exp]	9.8	0.9289
AT5G27920			F-box family protein (.1)		Lus10029869 [exp]	10.2	0.8890
AT5G20080			FAD/NAD(P)-binding oxidoreduct...		Lus10030059 [exp]	13.9	0.8998
AT1G13580		LOH3, LAG13	LAG One Homologue 3, LAG1 long...		Lus10013063 [exp]	14.5	0.8915
AT2G47270	bHLH	bHLH151, UPB1	UPBEAT1, sequence-specific DNA...		Lus10002419 [exp]	14.5	0.9227
AT3G04830			Protein prenylyltransferase su...		Lus10001785 [exp]	16.1	0.9077

Compare expression of checked genes

Lus10012142 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.