Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G31830 713 / 0 Amino acid permease family protein (.1.2) AT5G05630 673 / 0 Amino acid permease family protein (.1) AT1G31820 624 / 0 Amino acid permease family protein (.1) AT3G19553 515 / 0 Amino acid permease family protein (.1) AT3G13620 396 / 2e-134 Amino acid permease family protein (.1) AT3G03720 43 / 0.0004 CAT4 cationic amino acid transporter 4 (.1.2) AT1G58030 43 / 0.0005 CAT2 cationic amino acid transporter 2 (.1) AT5G36940 43 / 0.0006 CAT3 cationic amino acid transporter 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007593 [exp] 910 / 0 AT1G31830 743 / 0.0 Amino acid permease family protein (.1.2) Lus10003232 [exp] 642 / 0 AT1G31830 687 / 0.0 Amino acid permease family protein (.1.2) Lus10009849 [exp] 522 / 0 AT3G19553 693 / 0.0 Amino acid permease family protein (.1) Lus10040966 [exp] 521 / 0 AT3G19553 694 / 0.0 Amino acid permease family protein (.1) Lus10039180 [exp] 399 / 2e-135 AT3G13620 711 / 0.0 Amino acid permease family protein (.1) Lus10034046 [exp] 372 / 1e-124 AT3G13620 641 / 0.0 Amino acid permease family protein (.1) Lus10010512 [exp] 370 / 5e-124 AT3G13620 643 / 0.0 Amino acid permease family protein (.1) Lus10013638 [exp] 51 / 2e-06 AT1G58030 964 / 0.0 cationic amino acid transporter 2 (.1) Lus10020320 [exp] 50 / 3e-06 AT1G58030 912 / 0.0 cationic amino acid transporter 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G103600 [exp] 739 / 0 AT1G31830 694 / 0.0 Amino acid permease family protein (.1.2) Potri.004G178000 [exp] 682 / 0 AT1G31830 637 / 0.0 Amino acid permease family protein (.1.2) Potri.001G296100 [exp] 521 / 0 AT3G19553 678 / 0.0 Amino acid permease family protein (.1) Potri.009G090300 [exp] 494 / 1e-172 AT3G19553 673 / 0.0 Amino acid permease family protein (.1) Potri.001G007300 [exp] 414 / 2e-141 AT3G13620 675 / 0.0 Amino acid permease family protein (.1) Potri.001G007200 [exp] 412 / 1e-140 AT3G13620 567 / 0.0 Amino acid permease family protein (.1) Potri.019G039700 [exp] 50 / 3e-06 AT1G58030 924 / 0.0 cationic amino acid transporter 2 (.1) Potri.013G065000 [exp] 47 / 2e-05 AT1G58030 873 / 0.0 cationic amino acid transporter 2 (.1) Potri.019G039600 [exp] 45 / 0.0001 AT3G03720 797 / 0.0 cationic amino acid transporter 4 (.1.2) Potri.001G150700 [exp] 44 / 0.0002 AT5G04770 519 / 2e-179 ARABIDOPSIS THALIANA CATIONIC AMINO ACID TRANSPORTER 6, cationic amino acid transporter 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF00324 [flax] [poplar] AA_permease Amino acid permease
Representative CDS sequence Show only first row Show all	>Lus10012153 pacid=23154990 polypeptide=Lus10012153 locus=Lus10012153.g ID=Lus10012153.BGIv1.0 annot-version=v1.0 ATGACAGAGTACAGTTCAGTCGATTTCGTCCCCATTGATGAAGCAGCTTCACCTTCTAGGGTTAGCACAAGCCACCCAACCAAGAACAAGGTATCAGTCA TCCCTTTGATTTTCCTCATCTTCTACGAGGTATCCGGCGGTCCATTCGGAGTCGAGGACAGTGTCCAGGCAGCTGGTCCTTTACTTGCTTTGTTAGGGTT CTTAGTGTTCCCATTGATATGGAGTGTCCCCGAAGCACTAATCACAGCCGAAATGGGAACCATGTTCCCCGAAAACGGAGGCTACGTCGTCTGGGTTTCC TCTGCTTTAGGCCCCTTTTGGGGGTTTCAACAAGGCTGGATGAAATGGCTGAGTGGTGTGATCGACAATGCGCTCTATCCAGTGCTGTTCCTTGATTATC TCAAATCCGGAATCCCAGCTTTGGGTGGCGGGTTGCCGAGGACTTTGGCTGCATTGATCTTGACGTTTATGCTTACTTACATGAACTATAGAGGGCTGAT CATTGTAGGCTGGGCTGCTGTGTTGTTAGGGATCTTCTCGATCATGCCCTTCGTTGTTATGGGGCTCGTTTCGATCCCCAAGCTCGAGCCTTCTCGGTGG CTAGTGATGGATTTGCATGATGTTAATTGGAATCTATATCTCAATACTCTCTTCTGGAACTTGAACTATTGGGATTCCATCAGTACCTTGTCTGGAGAGG TGGAGAATCCTAAGAAGACTTTACCGATGGCGCTGTTCTACGCTTTGATCTTCGTCGTGTTTGGCTATTTCTTCCCGCTTTTGATTGGTACCGGCGCTGT ACCTCTCGATCGCGACCTCTGGACCGATGGCTACTTCTCGGATATCGCAAAGCTGGTTGGTGGAGTTTGGCTGAGGTGGTGGATACAAGGTGCGGCTGCA TTGTCCAACATGGGGATGTTCATGGCCGAAATGAGCTCAGACTCGTTCCAGCTACTGGGCATGGCCGAACGAGGGATGCTGCCCGAGTTCTTTGCGAAAC GGTCCAAGTACGGTACGCCGCTAATCGGGATCCTCTTCTCGGCCTCCGGGGTGATCCTCCTTTCGTGGCTGAGCTTTCAGGAGATTGTTGCGGCCGAGAA TTTTCTTTACTGTTTCGGGATGATACTTGAGTTCATCGCGTTCATAAGGCTGCGAATGAAGTACCCGGCTGCATCAAGGCCGTACCGCATTCCATTGGGG ACAATCGGGTCAGTACTAATGTGCGTCCCTCCTACGATACTGATCTGCATCGTGCTTGCCCTCTCGACGCTGAAGGTCATGCTCGTGAGCCTCGGTGCTC TGGCGATCGGGCTTGTGATGCACCCGTTCCTGGTTTATGCTGAGAAGAAGAAGTGGATGAAGTTCTCCGTAAGTGCTGAGCTCCCGGATCTTGATGGCGT TGGACGAGAAGCTAGCGAGTCTTTGGTTCAGTGA
AA sequence Show only first row Show all	>Lus10012153 pacid=23154990 polypeptide=Lus10012153 locus=Lus10012153.g ID=Lus10012153.BGIv1.0 annot-version=v1.0 MTEYSSVDFVPIDEAASPSRVSTSHPTKNKVSVIPLIFLIFYEVSGGPFGVEDSVQAAGPLLALLGFLVFPLIWSVPEALITAEMGTMFPENGGYVVWVS SALGPFWGFQQGWMKWLSGVIDNALYPVLFLDYLKSGIPALGGGLPRTLAALILTFMLTYMNYRGLIIVGWAAVLLGIFSIMPFVVMGLVSIPKLEPSRW LVMDLHDVNWNLYLNTLFWNLNYWDSISTLSGEVENPKKTLPMALFYALIFVVFGYFFPLLIGTGAVPLDRDLWTDGYFSDIAKLVGGVWLRWWIQGAAA LSNMGMFMAEMSSDSFQLLGMAERGMLPEFFAKRSKYGTPLIGILFSASGVILLSWLSFQEIVAAENFLYCFGMILEFIAFIRLRMKYPAASRPYRIPLG TIGSVLMCVPPTILICIVLALSTLKVMLVSLGALAIGLVMHPFLVYAEKKKWMKFSVSAELPDLDGVGREASESLVQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G31830			Amino acid permease family pro...		Lus10012153 [exp]	0	1
AT3G59840			unknown protein		Lus10030936 [exp]	1.0	0.9200
					Lus10007581 [exp]	2.0	0.9181
AT4G02500		ATXT2, XXT2	XYG XYLOSYLTRANSFERASE 2, ARAB...		Lus10037516 [exp]	2.4	0.9186
AT2G21090			Pentatricopeptide repeat (PPR-...		Lus10005064 [exp]	2.8	0.9193
AT2G47550			Plant invertase/pectin methyle...		Lus10020680 [exp]	3.9	0.9153
AT4G00390	GeBP		DNA-binding storekeeper protei...		Lus10028550 [exp]	5.7	0.8968
AT5G61030		GR-RBP3	glycine-rich RNA-binding prote...		Lus10021154 [exp]	5.7	0.8835
AT4G26500		SUFE1, EMB1374,...	SULFUR E 1, MBRYO DEFECTIVE 13...		Lus10015605 [exp]	7.3	0.8807
AT5G16420			Pentatricopeptide repeat (PPR-...		Lus10030223 [exp]	7.6	0.8647
AT5G41020	MYB		myb family transcription facto...		Lus10041714 [exp]	8.2	0.8814

Compare expression of checked genes

Lus10012153 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.