Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G26330 87 / 1e-21 Cupredoxin superfamily protein (.1) AT2G31050 87 / 1e-21 Cupredoxin superfamily protein (.1) AT5G07475 85 / 8e-21 Cupredoxin superfamily protein (.1) AT3G17675 82 / 9e-21 Cupredoxin superfamily protein (.1) AT2G26720 83 / 5e-20 Cupredoxin superfamily protein (.1) AT1G17800 76 / 1e-17 AtENODL22 early nodulin-like protein 22 (.1) AT2G32300 75 / 2e-16 UCC1 uclacyanin 1 (.1) AT3G60270 73 / 2e-16 Cupredoxin superfamily protein (.1) AT2G27035 72 / 4e-16 AtENODL20 early nodulin-like protein 20 (.1) AT1G72230 70 / 3e-15 Cupredoxin superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007582 [exp] 286 / 8e-94 AT4G35110 120 / 2e-29 Arabidopsis phospholipase-like protein (PEARLI 4) family (.1), Arabidopsis phospholipase-like protein (PEARLI 4) family (.2), Arabidopsis phospholipase-like protein (PEARLI 4) family (.3), Arabidopsis phospholipase-like protein (PEARLI 4) family (.4) Lus10010533 [exp] 96 / 8e-25 AT5G26330 174 / 1e-55 Cupredoxin superfamily protein (.1) Lus10041849 [exp] 90 / 2e-23 AT2G02850 130 / 5e-40 plantacyanin (.1) Lus10012085 [exp] 90 / 9e-23 AT5G07475 142 / 4e-43 Cupredoxin superfamily protein (.1) Lus10002614 [exp] 84 / 5e-21 AT2G32300 100 / 1e-26 uclacyanin 1 (.1) Lus10007026 [exp] 85 / 8e-21 AT2G32300 96 / 4e-25 uclacyanin 1 (.1) Lus10041850 [exp] 81 / 6e-20 AT2G02850 121 / 1e-36 plantacyanin (.1) Lus10041211 [exp] 82 / 2e-19 AT5G26330 167 / 6e-53 Cupredoxin superfamily protein (.1) Lus10026064 [exp] 82 / 2e-19 AT5G15350 113 / 4e-32 early nodulin-like protein 17 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G136200 [exp] 134 / 5e-40 AT5G26330 88 / 4e-22 Cupredoxin superfamily protein (.1) Potri.010G089900 [exp] 93 / 7e-24 AT5G26330 187 / 7e-61 Cupredoxin superfamily protein (.1) Potri.001G080700 [exp] 89 / 2e-22 AT5G07475 164 / 1e-51 Cupredoxin superfamily protein (.1) Potri.013G061300 [exp] 88 / 3e-22 AT3G17675 102 / 1e-28 Cupredoxin superfamily protein (.1) Potri.002G161300 [exp] 87 / 1e-21 AT5G26330 146 / 5e-45 Cupredoxin superfamily protein (.1) Potri.008G151000 [exp] 87 / 1e-21 AT5G26330 183 / 2e-59 Cupredoxin superfamily protein (.1) Potri.003G150300 [exp] 86 / 5e-21 AT5G07475 178 / 2e-57 Cupredoxin superfamily protein (.1) Potri.006G259101 [exp] 84 / 1e-20 AT5G26330 142 / 2e-43 Cupredoxin superfamily protein (.1) Potri.006G259000 [exp] 84 / 2e-20 AT5G26330 144 / 6e-44 Cupredoxin superfamily protein (.1) Potri.003G047300 [exp] 84 / 5e-20 AT5G26330 121 / 2e-34 Cupredoxin superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0026 [flax] [poplar] CU_oxidase PF02298 [flax] [poplar] Cu_bind_like Plastocyanin-like domain
Representative CDS sequence Show only first row Show all	>Lus10012165 pacid=23154917 polypeptide=Lus10012165 locus=Lus10012165.g ID=Lus10012165.BGIv1.0 annot-version=v1.0 ATGGCGATGGTGGTGATCAATTACAGCTTGTTTCTGATTTCCCTTTTGGCCGTGATTGTCATGATCAATGGCGTCGTGTTCACAGCTCGTGGTGAAGTGT TCAAGGTTGGCGATGAAAGTGGTTGGAATATGCAGGTCAACTACGGGTCCTGGTCGGAGAAGCACAACTTCACCGTCGGCGACATACTCGAGTTCAAGTA CTCGAAATCGGACCACAACGTGTACGAGGTGACGAGGGAAGTGTTTCAAACTTGCAACACAAGCCTCGGAGACGTGATGGCCAAGTATCAAAGTGGGAAT GATGAAATAGAGCTTAGAGAGGGCAAGAAATATTGGTTCATCTGCGAAATTGATGGCCATTGCCTTGGTGGGATGAGATTGGCTATTGGAGTTGAGAACC AGACTGTCGCCGCCGCTGCCGGCAATGACGGGAGCGGGAGCGGCGACCCTTCTTCGGGTTATAAGGATGTGTACAACTTTGGGAGATGTTGTACCTCTTT TGTTCACTTGGTATTTGTACTCATTTGCATTTGGAAGTGGTGA
AA sequence Show only first row Show all	>Lus10012165 pacid=23154917 polypeptide=Lus10012165 locus=Lus10012165.g ID=Lus10012165.BGIv1.0 annot-version=v1.0 MAMVVINYSLFLISLLAVIVMINGVVFTARGEVFKVGDESGWNMQVNYGSWSEKHNFTVGDILEFKYSKSDHNVYEVTREVFQTCNTSLGDVMAKYQSGN DEIELREGKKYWFICEIDGHCLGGMRLAIGVENQTVAAAAGNDGSGSGDPSSGYKDVYNFGRCCTSFVHLVFVLICIWKW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G07475			Cupredoxin superfamily protein...		Lus10012165 [exp]	0	1
AT4G26210			Mitochondrial ATP synthase sub...		Lus10040544 [exp]	2.8	0.8061
AT2G38080		ATLMCO4, IRX12,...	LACCASE 4, IRREGULAR XYLEM 12,...		Lus10032894 [exp]	7.2	0.8432
					Lus10026494 [exp]	18.1	0.8315
AT4G18700		ATWL4, CIPK12, ...	SNF1-RELATED PROTEIN KINASE 3....		Lus10007284 [exp]	20.7	0.8163
AT2G17570			Undecaprenyl pyrophosphate syn...		Lus10032757 [exp]	24.0	0.8093
AT4G34490		ATCAP1	cyclase associated protein 1 (...		Lus10040460 [exp]	25.7	0.7992
AT5G42660			Protein of unknown function (D...		Lus10032311 [exp]	27.5	0.8026
AT5G01360		TBL3	TRICHOME BIREFRINGENCE-LIKE 3,...		Lus10027813 [exp]	29.0	0.8225
AT5G40630			Ubiquitin-like superfamily pro...		Lus10032107 [exp]	29.1	0.8048
AT1G71070			Core-2/I-branching beta-1,6-N-...		Lus10033379 [exp]	32.4	0.8179

Compare expression of checked genes

Lus10012165 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.