Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38340 117 / 2e-31 AP2_ERF DREB2E, DREB19 dehydration response element-binding protein 19, Integrase-type DNA-binding superfamily protein (.1) AT1G75490 115 / 8e-31 AP2_ERF DREB2D Integrase-type DNA-binding superfamily protein (.1) AT5G18450 115 / 9e-30 AP2_ERF DREB2G Integrase-type DNA-binding superfamily protein (.1) AT3G57600 110 / 5e-28 AP2_ERF DREB2F Integrase-type DNA-binding superfamily protein (.1) AT2G40340 110 / 9e-28 AP2_ERF AtERF48, DREB2C Integrase-type DNA-binding superfamily protein (.1) AT2G40350 104 / 2e-27 AP2_ERF DREB2H Integrase-type DNA-binding superfamily protein (.1) AT5G05410 101 / 2e-24 AP2_ERF DREB2A DEHYDRATION-RESPONSIVE ELEMENT BINDING PROTEIN 2, DRE-binding protein 2A (.1.2) AT3G11020 96 / 2e-22 AP2_ERF DREB2B DEHYDRATION-RESPONSIVE ELEMENT BINDING PROTEIN 2, DRE/CRT-binding protein 2B (.1) AT5G65130 88 / 7e-20 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT1G78080 89 / 8e-20 AP2_ERF CAF1, RAP2.4, WIND1 wound induced dedifferentiation 1, related to AP2 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002855 [exp] 464 / 6e-166 AT2G40340 132 / 2e-37 Integrase-type DNA-binding superfamily protein (.1) Lus10010632 [exp] 117 / 2e-31 AT1G75490 174 / 6e-55 Integrase-type DNA-binding superfamily protein (.1) Lus10003581 [exp] 114 / 1e-30 AT2G40340 139 / 6e-42 Integrase-type DNA-binding superfamily protein (.1) Lus10011319 [exp] 111 / 2e-28 AT3G57600 207 / 5e-66 Integrase-type DNA-binding superfamily protein (.1) Lus10012210 [exp] 107 / 6e-27 AT3G57600 207 / 4e-66 Integrase-type DNA-binding superfamily protein (.1) Lus10034902 [exp] 105 / 2e-26 AT2G40340 172 / 7e-52 Integrase-type DNA-binding superfamily protein (.1) Lus10023633 [exp] 105 / 3e-26 AT2G40340 181 / 1e-54 Integrase-type DNA-binding superfamily protein (.1) Lus10024298 [exp] 97 / 3e-23 AT1G75490 159 / 1e-48 Integrase-type DNA-binding superfamily protein (.1) Lus10006127 [exp] 97 / 4e-23 AT1G75490 155 / 8e-47 Integrase-type DNA-binding superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G104200 [exp] 132 / 7e-35 AT2G38340 91 / 1e-20 dehydration response element-binding protein 19, Integrase-type DNA-binding superfamily protein (.1) Potri.006G054500 [exp] 113 / 4e-29 AT3G57600 234 / 1e-76 Integrase-type DNA-binding superfamily protein (.1) Potri.016G053200 [exp] 113 / 4e-29 AT3G57600 256 / 5e-85 Integrase-type DNA-binding superfamily protein (.1) Potri.016G126100 [exp] 111 / 2e-27 AT2G38340 96 / 4e-22 dehydration response element-binding protein 19, Integrase-type DNA-binding superfamily protein (.1) Potri.008G073600 [exp] 108 / 3e-27 AT2G40340 129 / 7e-35 Integrase-type DNA-binding superfamily protein (.1) Potri.010G183700 [exp] 103 / 2e-25 AT5G05410 124 / 1e-33 DEHYDRATION-RESPONSIVE ELEMENT BINDING PROTEIN 2, DRE-binding protein 2A (.1.2) Potri.002G029400 [exp] 99 / 2e-24 AT1G75490 163 / 3e-50 Integrase-type DNA-binding superfamily protein (.1) Potri.005G233300 [exp] 99 / 3e-24 AT1G75490 161 / 2e-49 Integrase-type DNA-binding superfamily protein (.1) Potri.005G168700 [exp] 92 / 8e-21 AT1G78080 197 / 3e-60 wound induced dedifferentiation 1, related to AP2 4 (.1) Potri.002G094200 [exp] 91 / 1e-20 AT1G78080 228 / 1e-72 wound induced dedifferentiation 1, related to AP2 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF00847 [flax] [poplar] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Lus10012226 pacid=23172672 polypeptide=Lus10012226 locus=Lus10012226.g ID=Lus10012226.BGIv1.0 annot-version=v1.0 ATGGAGGATTTTTCTAGTATTCAGAAGCGAACACAGAGGAGGAGGATTTGCGGAGGAGATGAATCGGTAGAGGAGACTTTAGAGAGATGGAAGAAGCAGA CGAAGCTGCTGAAGAAGAAGAATCCACCGAAAGGATCGAAGAAAGGATGCATGAGAGGGAAAGGAGGGCCGGAGAATCTTACCTGCAGATACAGAGGGGT TCGGCAGAGGACTTGGGGGAAGTGGGTGGCGGAGATACGGGAACCGGTCTTGATGACTGGTTCGACCAAGAAGAAAGGGAGCCGGCTCTGGTTAGGAACT TTTGAGACGGCGGTTGAAGCTGCGATGGCTTACGACAACGCCGCCAGGTCCATGTACGGAGGCTCCGCCGTTCTTAACTTCCCCAACGGTGTTGTGAATG ATGATGATCAGTCGAATAATCCGTCTTCTTCTCCAGCGACGGAAACCGGAACAGAGATTTCCTCGGCCTCTTTTGACGAGGGAGTAGTGACGATGGAGGA ATTGATCAAGCGGGAGGTTGCAGAAGAAGAACCTGAGGTTCAGAATACGAAGATGATGAACGGTACTGAAGGCGTAAACCTGAAGGACGAAGGATTAGAC GGGGAGCTTGAGGAGTTCATGAAATACTGTAGCAGCTGGGCATTAAACTCAAATACAGAAGAAGAAGAAGAAGAAGAAGAAGAGAGAATGGTGAAATTAG AAGAGGTGAATGGAAACGAGCAAACGAACAGTGGTGGCACCACTACTACTTCTGATGTTGCTTACCATACGGACTTCGGCAGGGAGACGAGTCTGAATCC TGATGTGTATCCCTGCGGCGGCTCATCTTTCGAGGAGCCATTCCGAATTGATACTGGTGTTGAGTGGTCAGGAGCTGAGGTGATAGATTGGAGTATGGTG GAAGGAGAGCCTGGAGTTCCTCCCGATATGATGCTGTTTCATGACCCTGAATTTGGATTTTATTAG
AA sequence Show only first row Show all	>Lus10012226 pacid=23172672 polypeptide=Lus10012226 locus=Lus10012226.g ID=Lus10012226.BGIv1.0 annot-version=v1.0 MEDFSSIQKRTQRRRICGGDESVEETLERWKKQTKLLKKKNPPKGSKKGCMRGKGGPENLTCRYRGVRQRTWGKWVAEIREPVLMTGSTKKKGSRLWLGT FETAVEAAMAYDNAARSMYGGSAVLNFPNGVVNDDDQSNNPSSSPATETGTEISSASFDEGVVTMEELIKREVAEEEPEVQNTKMMNGTEGVNLKDEGLD GELEEFMKYCSSWALNSNTEEEEEEEEERMVKLEEVNGNEQTNSGGTTTTSDVAYHTDFGRETSLNPDVYPCGGSSFEEPFRIDTGVEWSGAEVIDWSMV EGEPGVPPDMMLFHDPEFGFY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G40340	AP2_ERF	AtERF48, DREB2C	Integrase-type DNA-binding sup...		Lus10012226 [exp]	0	1
AT5G06710	HD	HAT14	homeobox from Arabidopsis thal...		Lus10021064 [exp]	2.2	0.9083
AT5G06060			NAD(P)-binding Rossmann-fold s...		Lus10040271 [exp]	2.2	0.9447
AT2G31945			unknown protein		Lus10039201 [exp]	8.9	0.9125
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10027585 [exp]	11.4	0.9166
AT4G21380		ARK3	receptor kinase 3 (.1)		Lus10033743 [exp]	12.7	0.9257
AT3G06490	MYB	BOS1, AtMYB108	BOTRYTIS-SUSCEPTIBLE1, myb dom...		Lus10017096 [exp]	17.3	0.8924
AT1G67340			HCP-like superfamily protein w...		Lus10015784 [exp]	19.2	0.8722
AT4G21920			unknown protein		Lus10006774 [exp]	26.3	0.8969
AT3G61220		SDR1	short-chain dehydrogenase/redu...		Lus10014688 [exp]	27.8	0.8824
AT5G51970			GroES-like zinc-binding alcoho...		Lus10031660 [exp]	31.4	0.9018

Compare expression of checked genes

Lus10012226 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.