Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G03450 74 / 8e-14 GRAS RGL2 RGA-like 2 (.1) AT4G08250 73 / 2e-13 GRAS GRAS family transcription factor (.1) AT5G41920 71 / 5e-13 GRAS GRAS family transcription factor (.1) AT1G66350 70 / 1e-12 GRAS RGL1 RGA-like 1 (.1) AT2G01570 69 / 3e-12 GRAS RGA1 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) AT5G66770 68 / 6e-12 GRAS GRAS family transcription factor (.1) AT3G54220 66 / 3e-11 GRAS SGR1, SCR SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) AT4G00150 64 / 1e-10 GRAS ATHAM3, SCL6, LOM3 LOST MERISTEMS 3, ARABIDOPSIS THALIANA HAIRY MERISTEM 3, GRAS family transcription factor (.1) AT1G14920 64 / 2e-10 GRAS RGA2, GAI RESTORATION ON GROWTH ON AMMONIA 2, GIBBERELLIC ACID INSENSITIVE, GRAS family transcription factor family protein (.1) AT5G17490 63 / 3e-10 GRAS AtRGL3, RGL3 RGA-like protein 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002204 [exp] 903 / 0 AT3G03450 87 / 7e-18 RGA-like 2 (.1) Lus10022664 [exp] 479 / 4e-166 AT4G08250 81 / 3e-16 GRAS family transcription factor (.1) Lus10002205 [exp] 257 / 7e-79 AT3G60630 71 / 1e-12 LOST MERISTEMS 2, ARABIDOPSIS THALIANA HAIRY MERISTEM 2, GRAS family transcription factor (.1) Lus10040166 [exp] 239 / 3e-68 AT3G60330 1533 / 0.0 H\(+\)-ATPase 7, H\(+\)-ATPase 7, H(+)-ATPase 7 (.1), H(+)-ATPase 7 (.2) Lus10012237 [exp] 209 / 8e-63 AT3G60630 66 / 2e-11 LOST MERISTEMS 2, ARABIDOPSIS THALIANA HAIRY MERISTEM 2, GRAS family transcription factor (.1) Lus10008316 [exp] 102 / 8e-23 AT4G08250 444 / 5e-152 GRAS family transcription factor (.1) Lus10028056 [exp] 91 / 1e-19 AT4G08250 416 / 5e-143 GRAS family transcription factor (.1) Lus10033517 [exp] 77 / 7e-15 AT4G08250 162 / 2e-44 GRAS family transcription factor (.1) Lus10027123 [exp] 76 / 2e-14 AT1G55580 298 / 5e-97 SCARECROW-LIKE 18, Lateral Suppressor, GRAS family transcription factor (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G122500 [exp] 411 / 9e-139 AT3G03450 85 / 3e-17 RGA-like 2 (.1) Potri.009G075500 [exp] 292 / 3e-93 AT4G08250 85 / 2e-17 GRAS family transcription factor (.1) Potri.005G175300 [exp] 96 / 8e-21 AT4G08250 467 / 2e-161 GRAS family transcription factor (.1) Potri.002G086100 [exp] 88 / 3e-18 AT4G08250 468 / 6e-162 GRAS family transcription factor (.1) Potri.007G026300 [exp] 83 / 1e-16 AT5G66770 589 / 0.0 GRAS family transcription factor (.1) Potri.001G326000 [exp] 73 / 2e-13 AT1G66350 296 / 2e-92 RGA-like 1 (.1) Potri.001G473200 [exp] 72 / 3e-13 AT1G55580 405 / 4e-139 SCARECROW-LIKE 18, Lateral Suppressor, GRAS family transcription factor (.1) Potri.005G123800 [exp] 72 / 5e-13 AT5G66770 650 / 0.0 GRAS family transcription factor (.1) Potri.019G007100 [exp] 71 / 8e-13 AT4G08250 162 / 1e-44 GRAS family transcription factor (.1) Potri.006G114200 [exp] 71 / 1e-12 AT3G54220 639 / 0.0 SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03514 [flax] [poplar] GRAS GRAS domain family
Representative CDS sequence Show only first row Show all	>Lus10012236 pacid=23172639 polypeptide=Lus10012236 locus=Lus10012236.g ID=Lus10012236.BGIv1.0 annot-version=v1.0 ATGACGAACTTGCAGGAAGAACTTTTGAATAATCAGTCATCTTGGCCATTCTACAATATGATTAATTCCCATTTCGACCATGATCAATCCTACGGTCATG ATCACTCTCCCACCGATTTCCCTCTTCCGCCGACGTCCGACGACATGGATGACATCATGGCAGATTCCTCCTTTCACCAGTTTTCATCCATGTTAACCGA CGACGTTTCACAACACTCCGACGACGGGTTAGGCATGATGAATATGATGGTCACCTTATCCACCGACGAGCTACTCATGGGCTTGGACCAATTCGACCCA AATTTCACCGACAGCGAAGCATACAGTAGCGCAATCCCAAGCCCAAGCCTAAGTCCAAGCACGTCGATCTTGTCGAACTCTGCGATTGAAGTAGCGAGTT TGAACATACCGGGAGAGGGGAGCGAACTCGGGAACGAGATCAGCGTCTTCAACCTACTGAAAGCGTACGGGGAAGCGATGGAAGGTGACCACATTCAGCT AGCGGAGGTGATAATGGCGAGCGTGAGCGAGAAAGTAAGCCCTGCCGGAGACTCTCTGGAGCGGCTGGCATTCAACCTTTCGCAAGATCTTCGGAAAGAA GTGGATTACATTAAGCAAGAAGCTCTCAAAAACTACGAGGCAGCTTTCAGAGCATTCTACCAGATCTTCCCTTACGGTAGATTCGCTCATTTCGCGGCCA ATTCGGCCATGGTCGAGTCAATTCCGATCGCAACCGAGTCGATCCACATTGTCGATTTCGACATTGGGGAAGGCGTCCAATGGCCACCGGTGATCGACAC TCTCTCCCGGATGAGGGGAGTCAAGTCAGTTAATCTAATGGCTGTAAACGATTGGGGAGAAATGGAATTTTCGGAGGCGGAATTAGGATGCCCGGCTATG TGGAATTTCGAAGAAGTTAAGAGACGGCTGAGGGATCATTCTAACCGGGTCGGGTTGAAAATGGAGATTCGAGGGATCCGAATCGAAGATCTTCGGGAAG AAATGGAGAGAAGGAAGAAGATGAAGAAGTTGGAATGGTGTGTTTTCAATTGTATGGTTGGGCTTCCACACATGAGGAGAGTAAGGAGCAGGAAATTGGT TGACGAGTTTCTCGAGTTGGGTAACGAGTTGGTCAACGAGTCGGGTGGGATTGTGACTCGCGGAGAAGGTGAAGCTTGGGAGAGTTTAAACGACTGTTCA GGATTTGGATCGTTTTTCGAAAGAAATATGGAGTATTACAGGTCATTATTGGAGTCGATTGAATTGAATTTTCCGGAGCTGGCAGAGGCGAGGATGGCGC TGGAGTGTCTGTTTGTGGCGCCTTTTATATCTGCGGTGGGATGGTTCCGACGGTGGTCGGAGATGAGTGAGATTCAAAATAAGAAGGAAGGGGCGCCAAC GGTGAGAAAATGGAGAGTGAGCAAAGAAAGCTTGGAAGAAGCCAAAGAAATGATGAACGAGAGGATGACGTCGTATGGAGTTAGAATCGGCGGGGATGAG GGAGACGAGATGGTTCTTGAGTGGAAAGGTTCACCGTTGGTGAAAGTATCGTCAACGTGGCGGAACTAA
AA sequence Show only first row Show all	>Lus10012236 pacid=23172639 polypeptide=Lus10012236 locus=Lus10012236.g ID=Lus10012236.BGIv1.0 annot-version=v1.0 MTNLQEELLNNQSSWPFYNMINSHFDHDQSYGHDHSPTDFPLPPTSDDMDDIMADSSFHQFSSMLTDDVSQHSDDGLGMMNMMVTLSTDELLMGLDQFDP NFTDSEAYSSAIPSPSLSPSTSILSNSAIEVASLNIPGEGSELGNEISVFNLLKAYGEAMEGDHIQLAEVIMASVSEKVSPAGDSLERLAFNLSQDLRKE VDYIKQEALKNYEAAFRAFYQIFPYGRFAHFAANSAMVESIPIATESIHIVDFDIGEGVQWPPVIDTLSRMRGVKSVNLMAVNDWGEMEFSEAELGCPAM WNFEEVKRRLRDHSNRVGLKMEIRGIRIEDLREEMERRKKMKKLEWCVFNCMVGLPHMRRVRSRKLVDEFLELGNELVNESGGIVTRGEGEAWESLNDCS GFGSFFERNMEYYRSLLESIELNFPELAEARMALECLFVAPFISAVGWFRRWSEMSEIQNKKEGAPTVRKWRVSKESLEEAKEMMNERMTSYGVRIGGDE GDEMVLEWKGSPLVKVSSTWRN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G03450	GRAS	RGL2	RGA-like 2 (.1)		Lus10012236 [exp]	0	1
AT4G20040			Pectin lyase-like superfamily ...		Lus10033240 [exp]	14.7	0.5198
AT1G05260		RCI3A, RCI3	RARE COLD INDUCIBLE GENE 3, Pe...		Lus10020064 [exp]	136.0	0.4421
AT2G32360			Ubiquitin-like superfamily pro...		Lus10027183 [exp]	137.8	0.4264
AT4G34131		UGT73B3	UDP-glucosyl transferase 73B3 ...		Lus10014079 [exp]	177.8	0.4133

Compare expression of checked genes

Lus10012236 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.