Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G08250 59 / 2e-09 GRAS GRAS family transcription factor (.1) AT1G55580 55 / 3e-08 GRAS SCL18, LAS SCARECROW-LIKE 18, Lateral Suppressor, GRAS family transcription factor (.1) AT3G50650 55 / 3e-08 GRAS SCL7 GRAS family transcription factor (.1) AT2G29060 54 / 1e-07 GRAS GRAS family transcription factor (.1) AT5G41920 53 / 1e-07 GRAS GRAS family transcription factor (.1) AT5G17490 52 / 3e-07 GRAS AtRGL3, RGL3 RGA-like protein 3 (.1) AT5G66770 52 / 3e-07 GRAS GRAS family transcription factor (.1) AT3G03450 52 / 5e-07 GRAS RGL2 RGA-like 2 (.1) AT1G66350 50 / 1e-06 GRAS RGL1 RGA-like 1 (.1) AT1G14920 50 / 1e-06 GRAS RGA2, GAI RESTORATION ON GROWTH ON AMMONIA 2, GIBBERELLIC ACID INSENSITIVE, GRAS family transcription factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002205 [exp] 582 / 0 AT3G60630 71 / 1e-12 LOST MERISTEMS 2, ARABIDOPSIS THALIANA HAIRY MERISTEM 2, GRAS family transcription factor (.1) Lus10002204 [exp] 204 / 5e-61 AT3G03450 87 / 7e-18 RGA-like 2 (.1) Lus10012236 [exp] 203 / 1e-60 AT3G03450 83 / 1e-16 RGA-like 2 (.1) Lus10022664 [exp] 187 / 5e-55 AT4G08250 81 / 3e-16 GRAS family transcription factor (.1) Lus10040166 [exp] 161 / 1e-43 AT3G60330 1533 / 0.0 H\(+\)-ATPase 7, H\(+\)-ATPase 7, H(+)-ATPase 7 (.1), H(+)-ATPase 7 (.2) Lus10028056 [exp] 74 / 2e-14 AT4G08250 416 / 5e-143 GRAS family transcription factor (.1) Lus10008316 [exp] 73 / 8e-14 AT4G08250 444 / 5e-152 GRAS family transcription factor (.1) Lus10033517 [exp] 69 / 2e-12 AT4G08250 162 / 2e-44 GRAS family transcription factor (.1) Lus10020857 [exp] 67 / 4e-12 AT4G08250 164 / 3e-45 GRAS family transcription factor (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G122500 [exp] 237 / 1e-73 AT3G03450 85 / 3e-17 RGA-like 2 (.1) Potri.009G075500 [exp] 206 / 3e-62 AT4G08250 85 / 2e-17 GRAS family transcription factor (.1) Potri.005G175300 [exp] 81 / 2e-16 AT4G08250 467 / 2e-161 GRAS family transcription factor (.1) Potri.002G086100 [exp] 75 / 1e-14 AT4G08250 468 / 6e-162 GRAS family transcription factor (.1) Potri.005G190300 [exp] 67 / 7e-12 AT4G08250 138 / 7e-36 GRAS family transcription factor (.1) Potri.019G007100 [exp] 62 / 2e-10 AT4G08250 162 / 1e-44 GRAS family transcription factor (.1) Potri.013G114900 [exp] 60 / 1e-09 AT2G04890 184 / 2e-53 SCARECROW-like 21 (.1) Potri.019G085600 [exp] 58 / 4e-09 AT2G04890 193 / 9e-57 SCARECROW-like 21 (.1) Potri.012G020200 [exp] 54 / 1e-07 AT1G55580 415 / 8e-143 SCARECROW-LIKE 18, Lateral Suppressor, GRAS family transcription factor (.1) Potri.001G473200 [exp] 53 / 1e-07 AT1G55580 405 / 4e-139 SCARECROW-LIKE 18, Lateral Suppressor, GRAS family transcription factor (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03514 [flax] [poplar] GRAS GRAS domain family
Representative CDS sequence Show only first row Show all	>Lus10012237 pacid=23172656 polypeptide=Lus10012237 locus=Lus10012237.g ID=Lus10012237.BGIv1.0 annot-version=v1.0 ATGGAGAACAAGCAGCCGGAGCTGGCAGAGATGATCACCGGACGGATAAGCGAGAAAGTCAGCCCCACGGGGGAGATCAACAACCGATTGCTCTACTACG CTTTCCAGCCGATTGACAAGCAATCGGAGTATCTTAAGCAGGAATCAGGGAAAATTTTTGATAGAGCCTTGGAAGCTTTTTATCGGATTTTCCCCTACGG AATGGTGGCTCATTTCGCCGCCAATTCCGCCATCCTTGAAACGACGTCGTCTCTAAACCCCGACGTCCTCCACATTGTCGATTTTGACATTGGGGAAGGC GTACAGTGGCCCCCACTGATCCTCGCCCTCGCACAACAACAAAGACGAATCCCCCAAATCAATCAAAACATTCAAAATCCTAATTTCTATTACGACACAA TTTTGCCAACCACAACAATGATTAAGTTAACCGCGATCAATTGGCGGAGCGAAGAGTCGTTGAATTCGAATTGTAGAAGATTCGAGTCGACAAAGAAACA ACTTCAAGATTATGCGAGCTCGTTCGGGGTGACAATGAGGATCGAAGAAATGGAGATTCAAGAATTGAAGAGAAGTTTGAAAAAAGGAGGGAAAAGATGC TTGACGTTCAACTGTATGTGGGGACTACCTCATATGGGCCGGAGGCGGAGCAAGGCCCAAGTTTCAGAGTTTTTAGGCCTGGCGAGGGAGCTATTGAGCC AGCCCGGAGCCAACGGGTTATTGACTTTTAGTGACGGAAATGGTAATAACAGTAGTGACAGGAATAATGATTGCGGATTTGGGGGGTTCTTCGAGAGCTA CATGGCGCATTACAGGGCGGTGCTGGAGTCGATGGAGTGGAGTTTTCCGGCGAGGCTACCGGAGGCGAGGCTGGCTATGGAGTATTTATTCGTGGCGCCG TTGATTCACTCGTCGGAGTGGGGAGGGAAGTGGGGAGAGGAGATGGCAGAGGAAGGGAGTGAGTTGGTTTCGAGGTTAGGATTCCAGCCAGTTACGATCA CCGCCGGCGATGGGTTGGCGGAGGTGAGGGAGGGTGGTAGGGAAGGGGGGAGTCGGTGA
AA sequence Show only first row Show all	>Lus10012237 pacid=23172656 polypeptide=Lus10012237 locus=Lus10012237.g ID=Lus10012237.BGIv1.0 annot-version=v1.0 MENKQPELAEMITGRISEKVSPTGEINNRLLYYAFQPIDKQSEYLKQESGKIFDRALEAFYRIFPYGMVAHFAANSAILETTSSLNPDVLHIVDFDIGEG VQWPPLILALAQQQRRIPQINQNIQNPNFYYDTILPTTTMIKLTAINWRSEESLNSNCRRFESTKKQLQDYASSFGVTMRIEEMEIQELKRSLKKGGKRC LTFNCMWGLPHMGRRRSKAQVSEFLGLARELLSQPGANGLLTFSDGNGNNSSDRNNDCGFGGFFESYMAHYRAVLESMEWSFPARLPEARLAMEYLFVAP LIHSSEWGGKWGEEMAEEGSELVSRLGFQPVTITAGDGLAEVREGGREGGSR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G60630	GRAS	ATHAM2, LOM2	LOST MERISTEMS 2, ARABIDOPSIS ...		Lus10012237 [exp]	0	1
					Lus10009449 [exp]	4.7	0.6496
AT5G51100		FSD2	Fe superoxide dismutase 2 (.1)		Lus10003430 [exp]	5.4	0.6615
AT1G13710		CYP78A5, KLUH	KLUH, "cytochrome P450, family...		Lus10015788 [exp]	12.2	0.6328
					Lus10039750 [exp]	12.2	0.6130
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Lus10040338 [exp]	13.4	0.6117
AT3G52620			unknown protein		Lus10022704 [exp]	14.0	0.5855
					Lus10002152 [exp]	14.7	0.6117
AT4G25650		TIC55-IV, PTC52...	TRANSLOCON AT THE INNER ENVELO...		Lus10025408 [exp]	15.9	0.6117
					Lus10010117 [exp]	17.0	0.6117
					Lus10005187 [exp]	18.0	0.6117

Compare expression of checked genes

Lus10012237 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.