Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38300 156 / 8e-45 GARP myb-like HTH transcriptional regulator family protein (.1) AT2G40260 140 / 3e-38 GARP Homeodomain-like superfamily protein (.1) AT2G42660 113 / 2e-29 GARP Homeodomain-like superfamily protein (.1) AT1G14600 104 / 3e-26 GARP Homeodomain-like superfamily protein (.1) AT2G02060 104 / 5e-26 GARP Homeodomain-like superfamily protein (.1) AT4G04580 88 / 6e-21 GARP Homeodomain-like superfamily protein (.1) AT1G32240 89 / 1e-19 GARP KAN2, KANADI2 KANADI 2, Homeodomain-like superfamily protein (.1) AT5G42630 86 / 1e-19 GARP KAN4, KANADI4, ATS KANADI 4, ABERRANT TESTA SHAPE, Homeodomain-like superfamily protein (.1.2) AT5G16560 86 / 1e-18 GARP KAN1, KAN KANADI 1, KANADI, Homeodomain-like superfamily protein (.1) AT4G17695 85 / 2e-18 GARP KAN3, KANADI3 KANADI 3, Homeodomain-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002207 [exp] 418 / 1e-147 AT2G38300 171 / 9e-51 myb-like HTH transcriptional regulator family protein (.1) Lus10040945 [exp] 142 / 2e-39 AT2G40260 159 / 2e-45 Homeodomain-like superfamily protein (.1) Lus10007513 [exp] 134 / 2e-36 AT2G40260 145 / 3e-40 Homeodomain-like superfamily protein (.1) Lus10017442 [exp] 133 / 4e-36 AT2G38300 148 / 3e-41 myb-like HTH transcriptional regulator family protein (.1) Lus10001149 [exp] 113 / 6e-29 AT2G40260 119 / 1e-30 Homeodomain-like superfamily protein (.1) Lus10029225 [exp] 107 / 5e-28 AT2G38300 110 / 5e-30 myb-like HTH transcriptional regulator family protein (.1) Lus10007279 [exp] 105 / 2e-27 AT2G38300 107 / 1e-28 myb-like HTH transcriptional regulator family protein (.1) Lus10035093 [exp] 104 / 4e-25 AT1G14600 103 / 1e-25 Homeodomain-like superfamily protein (.1) Lus10022886 [exp] 91 / 3e-20 AT4G28610 310 / 7e-102 phosphate starvation response 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G121800 [exp] 184 / 5e-55 AT2G38300 183 / 1e-54 myb-like HTH transcriptional regulator family protein (.1) Potri.010G185700 [exp] 149 / 7e-42 AT2G40260 188 / 5e-56 Homeodomain-like superfamily protein (.1) Potri.008G071700 [exp] 137 / 2e-37 AT2G40260 166 / 2e-47 Homeodomain-like superfamily protein (.1) Potri.009G075100 [exp] 129 / 1e-34 AT2G38300 162 / 4e-47 myb-like HTH transcriptional regulator family protein (.1) Potri.004G057900 [exp] 130 / 2e-34 AT2G38300 139 / 7e-38 myb-like HTH transcriptional regulator family protein (.1) Potri.001G280000 [exp] 126 / 2e-33 AT2G38300 140 / 2e-38 myb-like HTH transcriptional regulator family protein (.1) Potri.010G099600 [exp] 118 / 5e-31 AT1G14600 126 / 9e-35 Homeodomain-like superfamily protein (.1) Potri.011G067150 [exp] 120 / 8e-31 AT2G38300 128 / 1e-33 myb-like HTH transcriptional regulator family protein (.1) Potri.008G142000 [exp] 115 / 5e-30 AT1G14600 130 / 2e-36 Homeodomain-like superfamily protein (.1) Potri.011G006350 [exp] 114 / 1e-29 AT2G02060 115 / 8e-31 Homeodomain-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10012239 pacid=23172647 polypeptide=Lus10012239 locus=Lus10012239.g ID=Lus10012239.BGIv1.0 annot-version=v1.0 ATGCAGGAATTGATCAGTCATGGGGGAATTTCCACGGGAAGCTGTGGTGGGGGAAAGACTAGTACAAACGAGGAAGAAGATGAGCTGCCCGGGGCCGGGC CGGGCAGCTGTTCTAGCAACAGTACGGTCGAGGAGGAGGACGACGACGACGAGGACGAGGAAGGAAAAGTTGGTAAAAGTAAAACGACGTCGTCTTCTGT TAGGCCGTACGTTAGATCCAAGCTGCCCAGGCTGAGGTGGACGCCGGAGCTTCATCACTCGTTTGTTAAGGCCGTGGAAAGGCTTGGTGGCCAAGAGAGA GCTACTCCGAAGCTGGTTCTTCAGTTGATGAATGTTCATGGGCTTAGCATCGCTCATGTCAAGAGCCATCTCCAGATGTACAGAAGTAAGAAGACTGACG ATCCGAATCGAGTAATATCCGAACAACACCGACATCTTCTCGAGAGTGGAGACCGGAACATATTCAACCTCAGCCAACTCCCAATGCTCCAAGGATTCAA CACCACCCTCCGCCGCCACTACCCAATTTACAACGTCAACAAACCTCATTTCAACGACGACATAAATCAACGTCGTTTCCTCCAGTCAAGACTGACCGGA CCACCGCCGGTTCCCGACAGGAACATTAATGGTACCAGCAGCTGGAAGTACTTTAGTACCACCACCACCAACATTATTAACTCTAACTTCCAACCCGCAA CAACGACGTCGTTTATAACCAGCGGGGCCCACCTGAAGAGAAAGGCCGCCACGTCGGATGATGATGATCACAAGCTTGATCTGGAGCTGTCTCTGAAGCT AAAACAGCCCAAATGCGGAGAGAAGAACGACGTAGTTTCGATGGAGGAAAGTCGACGGCCACCGGAAGTAGGACGGTTACTTGAAAGTGAGTTGTCTTTG TCTTTGTGTTCGCCGTCTTCTTGTGATAGAGTTAATAAGAAAGAGCATGGGAAAAGGACGAGTACTCTGGATCTGACCATATGA
AA sequence Show only first row Show all	>Lus10012239 pacid=23172647 polypeptide=Lus10012239 locus=Lus10012239.g ID=Lus10012239.BGIv1.0 annot-version=v1.0 MQELISHGGISTGSCGGGKTSTNEEEDELPGAGPGSCSSNSTVEEEDDDDEDEEGKVGKSKTTSSSVRPYVRSKLPRLRWTPELHHSFVKAVERLGGQER ATPKLVLQLMNVHGLSIAHVKSHLQMYRSKKTDDPNRVISEQHRHLLESGDRNIFNLSQLPMLQGFNTTLRRHYPIYNVNKPHFNDDINQRRFLQSRLTG PPPVPDRNINGTSSWKYFSTTTTNIINSNFQPATTTSFITSGAHLKRKAATSDDDDHKLDLELSLKLKQPKCGEKNDVVSMEESRRPPEVGRLLESELSL SLCSPSSCDRVNKKEHGKRTSTLDLTI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G38300	GARP		myb-like HTH transcriptional r...		Lus10012239 [exp]	0	1
AT1G29280	WRKY	ATWRKY65, WRKY6...	WRKY DNA-binding protein 65 (....		Lus10029252 [exp]	1.4	0.9708
AT1G22340		ATUGT85A7	UDP-glucosyl transferase 85A7 ...		Lus10004670 [exp]	1.4	0.9684
AT1G27660	bHLH	bHLH110	basic helix-loop-helix (bHLH) ...		Lus10025987 [exp]	2.2	0.9605
AT2G38300	GARP		myb-like HTH transcriptional r...		Lus10002207 [exp]	2.4	0.9680
AT1G63380			NAD(P)-binding Rossmann-fold s...		Lus10007038 [exp]	3.5	0.9679
AT3G49150			F-box/RNI-like superfamily pro...		Lus10025561 [exp]	4.6	0.9508
AT5G10830			S-adenosyl-L-methionine-depend...		Lus10024476 [exp]	4.9	0.9546
AT5G13110		G6PD2	glucose-6-phosphate dehydrogen...		Lus10011340 [exp]	5.5	0.9242
					Lus10015758 [exp]	6.7	0.9473
AT1G19360		RRA3	reduced residual arabinose 3, ...		Lus10042340 [exp]	6.9	0.9334

Compare expression of checked genes

Lus10012239 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.