Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12010 374 / 2e-113 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G17680 355 / 3e-106 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G18360 347 / 5e-106 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT4G19510 344 / 1e-103 Disease resistance protein (TIR-NBS-LRR class) (.1), Disease resistance protein (TIR-NBS-LRR class) (.2) AT5G49140 337 / 2e-101 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G46260 338 / 1e-100 disease resistance protein (TIR-NBS-LRR class) family (.1) AT4G11170 336 / 2e-100 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G46270 332 / 1e-98 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G41750 330 / 3e-98 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT5G40910 316 / 4e-93 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016029 [exp] 1476 / 0 AT4G12010 451 / 2e-138 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10015350 [exp] 1100 / 0 AT4G12010 422 / 2e-127 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10015648 [exp] 723 / 0 AT4G12010 420 / 1e-126 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10018021 [exp] 714 / 0 AT4G12010 434 / 5e-131 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10023051 [exp] 665 / 0 AT4G12010 415 / 2e-125 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10015650 [exp] 657 / 0 AT4G12010 346 / 3e-103 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10010221 [exp] 654 / 0 AT5G17680 369 / 4e-109 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10008221 [exp] 649 / 0 AT4G12010 400 / 8e-120 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10009107 [exp] 605 / 0 AT4G12010 347 / 4e-101 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G068200 [exp] 477 / 5e-153 AT5G17680 629 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070700 [exp] 471 / 2e-149 AT5G17680 722 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G069500 [exp] 474 / 7e-149 AT5G17680 711 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.017G010800 [exp] 466 / 5e-148 AT5G17680 592 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G068300 [exp] 458 / 7e-146 AT5G17680 580 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G097100 [exp] 447 / 2e-141 AT4G12010 521 / 8e-165 Disease resistance protein (TIR-NBS-LRR class) family (.1) Potri.019G070300 [exp] 434 / 3e-139 AT5G17680 558 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G098500 [exp] 433 / 4e-138 AT5G17680 496 / 4e-157 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070393 [exp] 442 / 2e-136 AT5G17680 629 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G113701 [exp] 432 / 1e-134 AT5G17680 596 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0173 [flax] [poplar] STIR PF01582 [flax] [poplar] TIR TIR domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0023 [flax] [poplar] P-loop_NTPase PF00931 [flax] [poplar] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Lus10012246 pacid=23172681 polypeptide=Lus10012246 locus=Lus10012246.g ID=Lus10012246.BGIv1.0 annot-version=v1.0 ATGGCTTCAACTTCTTCTTCTTCTTCAAGCTCCGAATACCACGGGCCATGGGAGTACGACGTTTTCCTCTGCTTCCGCGGGGAGACAAGGACCTCGTTCA CGAGCCACGTCATGGCGGCGCTGTCGGAGAAGAAAATAAGGACCTTCATCGACACCATGCTGGGGAAAGGGGACAGCATAACCGAGCTCCTCTCCGTCCT CAAGCGCTCAGCAGTCTCCGTCATCATATTCTCCGAGAGGTTCGCGGATTCGCCCTGGTGCCTCGACGAGGTGGCCACCATTTCCCGGAGCATCAAGGAG TTCGGCCACAGGGTGCTCCCCGTTTTCTACAACGTTGACCCGTCGGAGGTTGACGGCGACACCGGGAGCTACGCCGCCATGATTGAGAGGCACGACCGGG GGAAGTACCCGCCGGCGGTGAAGATGAGGTTGAGATCTGCGCTCAAGGAAGTCGTCGATAAGGCCGGGCTGACTTCTTACGAGATTAGACTCGACTCACA TTTGATAAAAGCGATAGTGGACAACGTATGCAGAGAACTGGTAGACATGTCTCCAAGTCTCAAACCCAAGAATTATGTTGGTATGGATTCCCGCGTGTGG GAAGTGGAGCGGCTGCTTGATATAAACCGCTCTGATGACATTCGGATTGTGGGATTATGGGGCATGTCCGGGATCGGCAAGACCACGCTAGCCAAGGCCT TGTACCAAGGGTTCACCAACTTCTCAAAAGAAGATGGTGGCACGAAGCATCACTTCGTTAAAGACATTAATGCCAAATGGAAAGGTCGGCCTGACAGCTT AGAAGGACTCCAAAAGGAGCTTTATGCCACTCTCCTCTCCGAGCAAGACAAGAATATCACTTCTAGTGACCTGGAGACCAGTTACCGCAGGGCTCGCCTT TCCCGCTTGAAGGTGTTCATTGTCCTCGATGATGTTGAACATTGGTCCCAGCTCGAACAGTTACTCCTCGGTGATGTCTTGAACCTCACGAAATTGTTCG CCCTGGGGAGCAGAATCATAGTGACTACGAGAAACAAGAAGGTGCTTGAATTGGCGATGGCCCGAATCTACCCTGTGGAGAAGCTTAACCCTCAAGAGTC ACTTCGGCTCTTCAGCCTGTACTCCTTCAGGCGGGAGATTCCGCCAGAGGACAGAAGGTATCAGTCGATTACGGCAGTGGGGTATTGCCAGGGATATCCA CTGGCGCTGACGGTGTTGGGGTGTGCGCTGTTTAGGAAGAACAAGAGCTATTGGCAAAGTTACTTGGAGGGGTTAAGGAAGACTGCAAAGCAGGAGATTC ACAGCGTTCTGAGGAAAAGCTACGATGAGCTGGGAAGGGACGAGAAGCGTATTTTTCTGGACATTGCCTGCTTTTTCAGAAGGAATTATTCGAAATCGAA TGTGATTAAGATGATGGAGGGTACCTATTACTCGGCGTATAGTCGGGTGGAGGACTTGATCGATAAGGCTCTGTTGATATGTGATCAATCTAGTGACAAC AATGACGACCAAGGTAGCACTACTGATGACAGTGGTGGTCAAGTTATCGAGGTTCATGATTTGCTGCACCAGATGGCTTGGAACATCATTGGCGAGGAAC CTGAGATTGGAAACCGCTGTAGGCTAGAGAATCCCGATGATATCCGCAAACTACTCACCACTCAGAAGGAGAAGAAGGCAACGGAAGGCATAAACTTGGA TCTGTCTAAAGCTGAGGAGATGCATTTGGCGTCTAATGTCTTTGTTGGGATGGATTGTCTTAGATTGCTCAAATTCACTTTGCCGGATTCATCATCATCT CCTGACAGGGCACTGACTAGCAAAATCTATCTCCCTGATTCCGGCCTGGACTCGCTCCCTCCTGCGTTAACAATGTTGTGGTGGGACGGCTTTCCTTCGC CATCGCTACCGTCAGAATTCTCTCCACACAACATTGTTCAAATTCGGATTCGTCACAGCCCTCTCACACAATGCTGGGATGGAGTTCAGGAATTTGTGAA CCTGAGGTGGTTTGACCTGTCCTACTGCGCAAACCTGACCGTTGTCCCAGATCTGTCGAGGGCCACTCATTTGGAATCACTAAAACTCGCGGGATGCAAG AGCATAGTAGAGCTTCCTTCCTTTGTCGAGTATCTCGACAAGTTAGTCATTTTAGACGTCGAAGGCTGCGAAAACCTCGAGATCCTCCCGCAAAAACTCG GCTCCAAACATCTCAAACATGTCATACTATCAAACTGCTGCAAAATAAAACAATGCCCCGAGCTCGTCAGCAACTGGGACAACTTGGACTTGCGTAGTAC TCCGATCACGACCCTGCCTTCTTCAATTTACACCGTCAAACAAGCTCAAACGCTCTGCCTCCACGGGCAGAGCATCACCGCCTTCCCGGAGTTCTCCCCA ACTCTAAAGAAATTCCATCTGTGCCACACCGCTATAGAAAAATTGCCACAGCAGCATAGCGATTCTCAGAAGTTAACCCTCCCGAGAATCGCTCAGTTCA TTTGA
AA sequence Show only first row Show all	>Lus10012246 pacid=23172681 polypeptide=Lus10012246 locus=Lus10012246.g ID=Lus10012246.BGIv1.0 annot-version=v1.0 MASTSSSSSSSEYHGPWEYDVFLCFRGETRTSFTSHVMAALSEKKIRTFIDTMLGKGDSITELLSVLKRSAVSVIIFSERFADSPWCLDEVATISRSIKE FGHRVLPVFYNVDPSEVDGDTGSYAAMIERHDRGKYPPAVKMRLRSALKEVVDKAGLTSYEIRLDSHLIKAIVDNVCRELVDMSPSLKPKNYVGMDSRVW EVERLLDINRSDDIRIVGLWGMSGIGKTTLAKALYQGFTNFSKEDGGTKHHFVKDINAKWKGRPDSLEGLQKELYATLLSEQDKNITSSDLETSYRRARL SRLKVFIVLDDVEHWSQLEQLLLGDVLNLTKLFALGSRIIVTTRNKKVLELAMARIYPVEKLNPQESLRLFSLYSFRREIPPEDRRYQSITAVGYCQGYP LALTVLGCALFRKNKSYWQSYLEGLRKTAKQEIHSVLRKSYDELGRDEKRIFLDIACFFRRNYSKSNVIKMMEGTYYSAYSRVEDLIDKALLICDQSSDN NDDQGSTTDDSGGQVIEVHDLLHQMAWNIIGEEPEIGNRCRLENPDDIRKLLTTQKEKKATEGINLDLSKAEEMHLASNVFVGMDCLRLLKFTLPDSSSS PDRALTSKIYLPDSGLDSLPPALTMLWWDGFPSPSLPSEFSPHNIVQIRIRHSPLTQCWDGVQEFVNLRWFDLSYCANLTVVPDLSRATHLESLKLAGCK SIVELPSFVEYLDKLVILDVEGCENLEILPQKLGSKHLKHVILSNCCKIKQCPELVSNWDNLDLRSTPITTLPSSIYTVKQAQTLCLHGQSITAFPEFSP TLKKFHLCHTAIEKLPQQHSDSQKLTLPRIAQFI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G12010			Disease resistance protein (TI...		Lus10012246 [exp]	0	1
AT1G56130			Leucine-rich repeat transmembr...		Lus10031199 [exp]	3.7	0.8641
AT3G25610			ATPase E1-E2 type family prote...		Lus10019152 [exp]	3.9	0.8959
AT2G16430		ATPAP10, PAP10	purple acid phosphatase 10 (.1...		Lus10017485 [exp]	4.5	0.9159
AT1G68360	C2H2ZnF		C2H2 and C2HC zinc fingers sup...		Lus10029204 [exp]	4.8	0.8559
AT1G71830		ATSERK1, SERK1	somatic embryogenesis receptor...		Lus10028715 [exp]	5.9	0.8915
AT5G45230			Disease resistance protein (TI...		Lus10012247 [exp]	6.2	0.9287
AT5G53130		ATCNGC1, CNGC1	CYCLIC NUCLEOTIDE-GATED CHANNE...		Lus10038815 [exp]	6.6	0.8659
AT3G23570			alpha/beta-Hydrolases superfam...		Lus10004436 [exp]	8.8	0.8702
AT5G53130		ATCNGC1, CNGC1	CYCLIC NUCLEOTIDE-GATED CHANNE...		Lus10014925 [exp]	16.5	0.8633
AT2G39650			Protein of unknown function (D...		Lus10023412 [exp]	17.2	0.8698

Compare expression of checked genes

Lus10012246 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.