Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20580 214 / 6e-73 Small nuclear ribonucleoprotein family protein (.1) AT1G76300 206 / 6e-70 SMD3 snRNP core protein SMD3 (.1) AT5G27720 60 / 2e-12 LSM4, EMB1644 SM-like protein 4, embryo defective 1644, Small nuclear ribonucleoprotein family protein (.1) AT4G02840 51 / 4e-09 Small nuclear ribonucleoprotein family protein (.1.2) AT3G07590 47 / 1e-07 Small nuclear ribonucleoprotein family protein (.1.2) AT1G20600 40 / 0.0001 B3 AP2/B3-like transcriptional factor family protein (.1) AT1G03330 38 / 0.0003 Small nuclear ribonucleoprotein family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016013 [exp] 237 / 5e-82 AT1G20580 219 / 3e-75 Small nuclear ribonucleoprotein family protein (.1) Lus10013227 [exp] 237 / 5e-82 AT1G20580 214 / 2e-73 Small nuclear ribonucleoprotein family protein (.1) Lus10030747 [exp] 237 / 5e-82 AT1G20580 214 / 2e-73 Small nuclear ribonucleoprotein family protein (.1) Lus10029426 [exp] 62 / 7e-12 AT5G27720 190 / 2e-58 SM-like protein 4, embryo defective 1644, Small nuclear ribonucleoprotein family protein (.1) Lus10004221 [exp] 61 / 1e-11 AT5G27720 182 / 2e-57 SM-like protein 4, embryo defective 1644, Small nuclear ribonucleoprotein family protein (.1) Lus10028022 [exp] 49 / 4e-08 AT3G07590 181 / 1e-60 Small nuclear ribonucleoprotein family protein (.1.2) Lus10003727 [exp] 49 / 1e-07 AT3G07590 180 / 1e-58 Small nuclear ribonucleoprotein family protein (.1.2) Lus10025186 [exp] 46 / 3e-07 AT3G07590 169 / 6e-56 Small nuclear ribonucleoprotein family protein (.1.2) Lus10016068 [exp] 46 / 3e-07 AT3G07590 169 / 6e-56 Small nuclear ribonucleoprotein family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G010200 [exp] 232 / 4e-80 AT1G20580 214 / 5e-73 Small nuclear ribonucleoprotein family protein (.1) Potri.005G251100 [exp] 229 / 3e-79 AT1G20580 211 / 6e-72 Small nuclear ribonucleoprotein family protein (.1) Potri.002G205700 [exp] 60 / 3e-12 AT5G27720 179 / 5e-59 SM-like protein 4, embryo defective 1644, Small nuclear ribonucleoprotein family protein (.1) Potri.014G130700 [exp] 59 / 9e-12 AT5G27720 176 / 7e-58 SM-like protein 4, embryo defective 1644, Small nuclear ribonucleoprotein family protein (.1) Potri.002G054800 [exp] 52 / 3e-09 AT3G07590 183 / 1e-61 Small nuclear ribonucleoprotein family protein (.1.2) Potri.005G207900 [exp] 44 / 1e-06 AT4G02840 152 / 3e-49 Small nuclear ribonucleoprotein family protein (.1.2) Potri.004G219000 [exp] 37 / 0.0004 AT1G03330 184 / 1e-62 Small nuclear ribonucleoprotein family protein (.1) Potri.003G014900 [exp] 37 / 0.0004 AT1G03330 184 / 1e-62 Small nuclear ribonucleoprotein family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0527 [flax] [poplar] Sm-like PF01423 [flax] [poplar] LSM LSM domain
Representative CDS sequence Show only first row Show all	>Lus10012263 pacid=23172718 polypeptide=Lus10012263 locus=Lus10012263.g ID=Lus10012263.BGIv1.0 annot-version=v1.0 ATGAGCAGAAGCTTGGGAATACCGGTAAAGCTACTCCACGAAGCCTCCGGCCACATCGTGACGGTGGAGCTTAAAAGCGGCGAGCTCTACAGAGGGAGCA TGTTGGAGTGCGAAGACAACTGGAATTGCCAGCTCGAGAACATTACTTACACTGCTAAGGATGGAAAGATTTCACAGCTTGAGCATGTTTTTATCAGAGG CAGCAAAGTCAGGTTTATGGTGATACCAGATATGCTAAAGAATGCCCCCATGTTTAAGCGTCTAGATGCTCGAATCAAGGGCAAGAGCGCCTCACTTGGA GTGGGGAGGGGAAGATCTGTTGCCATGCGTGCTAAAGCACAGGCTGCTACAGGGCGCGGAGGACCTGGAAGGGGAGCAGTACCACCTGTTAGGAGATAA
AA sequence Show only first row Show all	>Lus10012263 pacid=23172718 polypeptide=Lus10012263 locus=Lus10012263.g ID=Lus10012263.BGIv1.0 annot-version=v1.0 MSRSLGIPVKLLHEASGHIVTVELKSGELYRGSMLECEDNWNCQLENITYTAKDGKISQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSASLG VGRGRSVAMRAKAQAATGRGGPGRGAVPPVRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G20580			Small nuclear ribonucleoprotei...		Lus10012263 [exp]	0	1
AT4G22320			unknown protein		Lus10043179 [exp]	3.7	0.8814
AT1G20580			Small nuclear ribonucleoprotei...		Lus10013227 [exp]	3.9	0.8729
AT3G27360			Histone superfamily protein (....		Lus10031252 [exp]	5.1	0.8919
AT3G03920			H/ACA ribonucleoprotein comple...		Lus10020289 [exp]	9.2	0.8675
AT3G53430			Ribosomal protein L11 family p...		Lus10015086 [exp]	14.5	0.8445
AT5G05610	Alfin	AL1	alfin-like 1 (.1.2)		Lus10014843 [exp]	14.7	0.8048
AT5G49170			unknown protein		Lus10022872 [exp]	15.1	0.8473
AT2G28740		HIS4	histone H4 (.1)		Lus10025964 [exp]	23.4	0.8673
AT4G15000			Ribosomal L27e protein family ...		Lus10039017 [exp]	23.5	0.8205
AT1G20580			Small nuclear ribonucleoprotei...		Lus10030747 [exp]	24.3	0.7858

Compare expression of checked genes

Lus10012263 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.