Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G47670 221 / 3e-68 Transmembrane amino acid transporter family protein (.1) AT4G35180 198 / 1e-59 LHT7 LYS/HIS transporter 7 (.1) AT5G40780 124 / 5e-32 LHT1, LTH1 lysine histidine transporter 1 (.1.2) AT1G24400 116 / 2e-29 ATLHT2, AATL2, LHT2 ARABIDOPSIS LYSINE HISTIDINE TRANSPORTER 2, AMINO ACID TRANSPORTER-LIKE PROTEIN 2, lysine histidine transporter 2 (.1) AT1G61270 112 / 1e-27 Transmembrane amino acid transporter family protein (.1) AT3G01760 109 / 1e-26 Transmembrane amino acid transporter family protein (.1) AT1G48640 104 / 7e-25 Transmembrane amino acid transporter family protein (.1) AT1G67640 100 / 9e-24 Transmembrane amino acid transporter family protein (.1) AT1G25530 100 / 2e-23 Transmembrane amino acid transporter family protein (.1) AT1G71680 84 / 1e-17 Transmembrane amino acid transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015997 [exp] 451 / 9e-158 AT1G47670 450 / 2e-154 Transmembrane amino acid transporter family protein (.1) Lus10025113 [exp] 227 / 5e-70 AT1G47670 529 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10023971 [exp] 226 / 1e-69 AT1G47670 526 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10032751 [exp] 221 / 5e-68 AT1G47670 922 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10011668 [exp] 220 / 1e-67 AT1G47670 918 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10003338 [exp] 219 / 4e-67 AT1G47670 565 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10003339 [exp] 195 / 2e-58 AT1G47670 410 / 9e-140 Transmembrane amino acid transporter family protein (.1) Lus10022642 [exp] 195 / 3e-58 AT4G35180 431 / 7e-148 LYS/HIS transporter 7 (.1) Lus10022641 [exp] 122 / 6e-32 AT1G47670 302 / 4e-99 Transmembrane amino acid transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G012900 [exp] 259 / 8e-83 AT1G47670 577 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.004G181100 [exp] 226 / 4e-70 AT1G47670 384 / 2e-128 Transmembrane amino acid transporter family protein (.1) Potri.014G036500 [exp] 218 / 1e-66 AT1G47670 922 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.004G181200 [exp] 213 / 8e-65 AT1G47670 504 / 3e-175 Transmembrane amino acid transporter family protein (.1) Potri.004G181000 [exp] 199 / 2e-60 AT1G47670 405 / 5e-138 Transmembrane amino acid transporter family protein (.1) Potri.009G140800 [exp] 201 / 4e-60 AT1G47670 509 / 6e-177 Transmembrane amino acid transporter family protein (.1) Potri.001G335300 [exp] 127 / 4e-33 AT5G40780 752 / 0.0 lysine histidine transporter 1 (.1.2) Potri.008G179000 [exp] 116 / 3e-29 AT1G24400 654 / 0.0 ARABIDOPSIS LYSINE HISTIDINE TRANSPORTER 2, AMINO ACID TRANSPORTER-LIKE PROTEIN 2, lysine histidine transporter 2 (.1) Potri.010G055800 [exp] 110 / 6e-27 AT5G40780 670 / 0.0 lysine histidine transporter 1 (.1.2) Potri.001G335200 [exp] 107 / 8e-26 AT5G40780 697 / 0.0 lysine histidine transporter 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF01490 [flax] [poplar] Aa_trans Transmembrane amino acid transporter protein
Representative CDS sequence Show only first row Show all	>Lus10012281 pacid=23172663 polypeptide=Lus10012281 locus=Lus10012281.g ID=Lus10012281.BGIv1.0 annot-version=v1.0 ATGGGGGAATCTGCAGCATTTGAAATAAGCCCCTTAGCTTCTGTTGTGCAGTCTCACTATTGCTTAGAATCACCTGGTGGCATCAGCAAGATCAATTATA ATTATGCTACTCCTCTTCCTCGAGAGGCATGGCTTCCAATCACCGAGTCGAGGAACGGTAACGCCTTGTGCGCTGCGCACACGCTTTGTTACGGAATCGG GTTCCAAGCCCTCCTTCTCCCCCTTGCTTTCGCCACCCTTGGCTGTTGCATGAACCAAATGGGTACTGTGGGGTGCGTTACAGTCGGTATCTCGGCCTAT CCATGGCTGCCTTTGGTGAGAACGCTTTCCCACGGGGAGAAGGGAGGGAAGTTGCTGGCGCTGTTCCCGACAATGTACCTATCAGGAGGAACCTGCGTAA CTCTGATCATAATAGGAGTCAGAACCCTCAAAACATTCCTCGAAATCATCCCAACAACCCATTCCGGCCACTCTCCACCACCTTTGAACACCGTTGAATG CTACCTAGTATTCACTATTACTGCAGTTGTGCTGTCTCAGTTTCTCCCAAACCTGAATTCAGTAGCCAAAGCGTCTCTCATCGGAGCAGTCACAGCCGTT ACCTACTGTGCTTTGATATTGGCTGGGACCCTAGTTCAAGCTGCTACCCTAGTTCAAGGCAGAAAATCACTATCTAATACGGATCATCAGCATGTCTCAA ACGAAGTCATTCATGGCGCGATCGATAAAGTTTGTGCCTTTCTCAATGGTATTGGATTCGTGGCTTTAGCCTTCCGAGGTCACAATCTAGTGCTTGAAAT TCAGGGCACGATGCCATCAAGTGCGAAGACGTCATCGAAGGTGCTTATGTGGAGAGGAGTTCAGATAGCTTACCTTGTTATAGCCCTATGTCTGTTCCCA CTTGCAATTGTTGGTCATTGGGCATATGGTAATCTGATCCGGGCTGAAGATAGAGGATTAATGATGCACGCATAG
AA sequence Show only first row Show all	>Lus10012281 pacid=23172663 polypeptide=Lus10012281 locus=Lus10012281.g ID=Lus10012281.BGIv1.0 annot-version=v1.0 MGESAAFEISPLASVVQSHYCLESPGGISKINYNYATPLPREAWLPITESRNGNALCAAHTLCYGIGFQALLLPLAFATLGCCMNQMGTVGCVTVGISAY PWLPLVRTLSHGEKGGKLLALFPTMYLSGGTCVTLIIIGVRTLKTFLEIIPTTHSGHSPPPLNTVECYLVFTITAVVLSQFLPNLNSVAKASLIGAVTAV TYCALILAGTLVQAATLVQGRKSLSNTDHQHVSNEVIHGAIDKVCAFLNGIGFVALAFRGHNLVLEIQGTMPSSAKTSSKVLMWRGVQIAYLVIALCLFP LAIVGHWAYGNLIRAEDRGLMMHA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G47670			Transmembrane amino acid trans...		Lus10012281 [exp]	0	1
AT4G33590			unknown protein		Lus10036462 [exp]	19.2	0.7269
AT4G39950		CYP79B2	"cytochrome P450, family 79, s...		Lus10026341 [exp]	19.5	0.7397
AT2G37980			O-fucosyltransferase family pr...		Lus10040236 [exp]	39.1	0.6612
AT5G01630		BRCA2(V), ATBRC...	BRCA2-like B (.1)		Lus10000316 [exp]	53.2	0.6950
					Lus10007590 [exp]	56.4	0.6569
AT1G28110		SCPL45	serine carboxypeptidase-like 4...		Lus10030317 [exp]	83.1	0.6499
AT3G18650	MADS	AGL103	AGAMOUS-like 103 (.1)		Lus10024347 [exp]	94.7	0.6601
AT1G13810			Restriction endonuclease, type...		Lus10010434 [exp]	97.3	0.6542
AT5G65520			Tetratricopeptide repeat (TPR)...		Lus10025714 [exp]	121.2	0.6581
AT5G19950			Domain of unknown function (DU...		Lus10043254 [exp]	125.5	0.6551

Compare expression of checked genes

Lus10012281 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.