Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G73170 676 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT3G10420 536 / 0 SPD1 SEEDLING PLASTID DEVELOPMENT 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT1G33290 339 / 8e-111 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015985 [exp] 1182 / 0 AT1G73170 717 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10017471 [exp] 526 / 5e-178 AT3G10420 835 / 0.0 SEEDLING PLASTID DEVELOPMENT 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10028811 [exp] 521 / 5e-177 AT3G10420 830 / 0.0 SEEDLING PLASTID DEVELOPMENT 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G375900 [exp] 771 / 0 AT1G73170 717 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.010G228600 [exp] 507 / 1e-171 AT3G10420 819 / 0.0 SEEDLING PLASTID DEVELOPMENT 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00004 [flax] [poplar] AAA ATPase family associated with various cellular activities (AAA)
Representative CDS sequence Show only first row Show all	>Lus10012291 pacid=23172694 polypeptide=Lus10012291 locus=Lus10012291.g ID=Lus10012291.BGIv1.0 annot-version=v1.0 ATGATTTGCAACATTTCTCCTCCGGTTCATCTTAAACCGTGCCCATCTCCCATCATCCAAACCTATCCACGCCAACCTTCAGCTCCCACCATCACACTCC CTCATCATTATCACACCTCACTCCGTTTCCCTACTCTCAGTGGCAGAAACCTCGCCAGAAACTGCAGCGGGTCTCTTCAGTCAACCACCGATGTATCTTC TACCTCTCCGTCGTCATCATCGTCTGACGAAGGCTTTGACGCAGAATTGGACCGCCTTCTTGCCCTGTTACCCGAAGAGATGAGGGCAAGACTTCTCGAG CATCCCGAGCTCGTCGGCTTAGTCGAGGTGGTTTTGGACCTAGGTCGTCCTCCGCTTGCTAGGTTTCCGTCCGGGGACTTCATCTTGTCCGATTCGGCCA TCACGCTTCAGGACCTTCAGTTTGCTGCATCGCAGGTTGGTGATTTTGCCATCGACAATCGCGCTGGTATAAGCAGGACGTTGCACCGGATTAGTGCGAT TAGGAATCGTAAGGGTGAAATAATCGGATTGACTTGCCGTGTCGGTCGAGCGATTCAGGGAAGTGCTAGTTTGCTGAGGGATTTGGTTCAGGACGGGGCT TCAATACTGCTGATTGGCCCTCCTGGGGTGGGGAAAACTACGATCATCAGGGAGATAGCTCGGATGCTTGCAAATGATTATCAAAAGCGAGTTATGATTG TTGACACTTCGAATGAGATAGGTGGGGATGGTGATATACCCCATTCCGGAATAGGCAATGCTCGAAGGATGCAGGTTGGGAATTCTGAAATGCAGCATAA GGTGCTAATAGAAGCCGTTGAGAATCACATGCCCCAAGTTATTGTCATAGATGAGATTGGAACAAAACTAGAAGCAATGGCTGCCAGTACGATTGCACAA CGAGGAATTCAGCTCGTGGCTACTGCTCATGGTGTTACAATAGAGAATTTGATAATGAATCCTTCTCTTGACATGCTTATTGGTGGTATACAGAGTGTAA CATTAGGGGATGATGAAGCTAGTCGACGAGGTGTCCAAAAGACTGTGTTAGAGAGGAAAGGACCTTCAACATTTGGTTGTGGTGTTGAGATCATTTCTAA AACTGAGCTGCGAGTTCATCGGTATCTGGAATCAACAGTGGATGCAGTCCTAGCAGGTCGATCTCCTGTTATCGATGTTCGCAAGATGAGATTGCAGGTG TCGAATGGCACAACAGAAGTTGAACCTTATGCAGATACATCTGTCAGAAAGGAACAAGACAACTCTCATGGAGGTTACGAGTTGATGGATGAACGTCTCA GTGTTGGTGAATTCACGATTGAGCTTCCTTTAAGCACCTCAGATCTCTCATCAGATGTTCAACCATTTCGCCTCTATGTGTACGGAATCCTGGAGGCAAG CGTTATCCAAGTGATTAATCAGTTGGAGGTTGCAGTTCAATTAACTTACAACATCAGTGAGGCAGATGGACTTCTTGCCTTGCAATCAAAAATCAAGAAG AATCTCAAAATTCAAGCGGCAGCGGAATCACACAAAATACCCATATACGTGACAAAGACAAGTTCTTTGGTGCAAGTAACAAAGGCCATAAAGGCATTGA TCAATGATCATGATGCTGATGGATCGAACACTGATGGTAAATCTTCCGAGAAGATGGATGCTCTCGAGGAGACGAGGATAGCAATCGAGGAAGTAGTGAT ACCGAAGGGGGAACCAGTCGAGCTTCTCCCAAGACAATACCACATTATCACTCTCCAGATGAACTTCATTCAGGGATACAAACTCCAGTCCGAGATACTC GGTCGAGGTCCAGAGGCTCGCCTCCGGATCTTACCATATACGGCTCAGAAGGACAACACGAAATCCAACATCGATAAAGAAAGTGGTAACACCGATGATG ATGCTGATGATGGTGAAGACGACGATGCTGAAAACTTGTCGGCTGCGAATGGAGGAACCAATGGATCAATCTACACAGTCGAGAAGCTGCCCTTCTTGCC GGATTCTTTCTGA
AA sequence Show only first row Show all	>Lus10012291 pacid=23172694 polypeptide=Lus10012291 locus=Lus10012291.g ID=Lus10012291.BGIv1.0 annot-version=v1.0 MICNISPPVHLKPCPSPIIQTYPRQPSAPTITLPHHYHTSLRFPTLSGRNLARNCSGSLQSTTDVSSTSPSSSSSDEGFDAELDRLLALLPEEMRARLLE HPELVGLVEVVLDLGRPPLARFPSGDFILSDSAITLQDLQFAASQVGDFAIDNRAGISRTLHRISAIRNRKGEIIGLTCRVGRAIQGSASLLRDLVQDGA SILLIGPPGVGKTTIIREIARMLANDYQKRVMIVDTSNEIGGDGDIPHSGIGNARRMQVGNSEMQHKVLIEAVENHMPQVIVIDEIGTKLEAMAASTIAQ RGIQLVATAHGVTIENLIMNPSLDMLIGGIQSVTLGDDEASRRGVQKTVLERKGPSTFGCGVEIISKTELRVHRYLESTVDAVLAGRSPVIDVRKMRLQV SNGTTEVEPYADTSVRKEQDNSHGGYELMDERLSVGEFTIELPLSTSDLSSDVQPFRLYVYGILEASVIQVINQLEVAVQLTYNISEADGLLALQSKIKK NLKIQAAAESHKIPIYVTKTSSLVQVTKAIKALINDHDADGSNTDGKSSEKMDALEETRIAIEEVVIPKGEPVELLPRQYHIITLQMNFIQGYKLQSEIL GRGPEARLRILPYTAQKDNTKSNIDKESGNTDDDADDGEDDDAENLSAANGGTNGSIYTVEKLPFLPDSF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G73170			P-loop containing nucleoside t...		Lus10012291 [exp]	0	1
AT3G12100			Cation efflux family protein (...		Lus10021058 [exp]	2.0	0.8845
AT1G29400		AML5	MEI2-like protein 5 (.1.2)		Lus10004591 [exp]	5.5	0.8629
AT2G39940		COI1	CORONATINE INSENSITIVE 1, RNI-...		Lus10009883 [exp]	6.5	0.8733
AT1G48410		AGO1	ARGONAUTE 1, Stabilizer of iro...		Lus10017983 [exp]	10.6	0.8426
AT5G22030		UBP8	ubiquitin-specific protease 8 ...		Lus10013599 [exp]	11.8	0.8480
AT4G10930			unknown protein		Lus10032402 [exp]	15.5	0.8346
AT5G54260		MRE11, ATMRE11	ARABIDOPSIS MEIOTIC RECOMBINAT...		Lus10038568 [exp]	17.5	0.8364
AT4G38470		STY46	serine/threonine/tyrosine kina...		Lus10023989 [exp]	18.9	0.8716
AT3G09560		ATPAH1	PHOSPHATIDIC ACID PHOSPHOHYDRO...		Lus10009064 [exp]	19.3	0.8488
AT3G02420			unknown protein		Lus10034084 [exp]	20.0	0.8549

Compare expression of checked genes

Lus10012291 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.