Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G36930 343 / 4e-99 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT1G27170 336 / 9e-96 transmembrane receptors;ATP binding (.1.2) AT1G27180 332 / 9e-94 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G17680 316 / 3e-89 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT1G69550 286 / 6e-79 disease resistance protein (TIR-NBS-LRR class) (.1) AT5G11250 280 / 2e-77 Disease resistance protein (TIR-NBS-LRR class) (.1) AT3G04220 275 / 2e-77 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT2G16870 278 / 4e-77 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G46260 277 / 2e-76 disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G44510 276 / 3e-76 TAO1 target of AVRB operation1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040576 [exp] 1379 / 0 AT1G27180 355 / 3e-103 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10000423 [exp] 1315 / 0 AT1G27180 338 / 5e-95 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10004747 [exp] 1243 / 0 AT5G36930 342 / 3e-99 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10007829 [exp] 1198 / 0 AT5G36930 330 / 2e-94 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10033953 [exp] 1174 / 0 AT5G36930 347 / 2e-102 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10007821 [exp] 1146 / 0 AT5G36930 339 / 4e-98 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10007831 [exp] 1096 / 0 AT1G27180 332 / 7e-96 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10007825 [exp] 1086 / 0 AT5G36930 318 / 2e-89 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10007823 [exp] 1050 / 0 AT1G27170 322 / 3e-92 transmembrane receptors;ATP binding (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T002200 [exp] 415 / 6e-127 AT5G36930 617 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.003G014200 [exp] 417 / 5e-126 AT5G36930 673 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002400 [exp] 409 / 6e-125 AT5G36930 658 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G001602 [exp] 412 / 2e-124 AT5G36930 778 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T001933 [exp] 408 / 2e-122 AT5G36930 617 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G017082 [exp] 405 / 2e-122 AT5G36930 638 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002066 [exp] 407 / 3e-122 AT5G36930 631 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G052000 [exp] 406 / 1e-121 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G021681 [exp] 405 / 1e-121 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T001500 [exp] 404 / 3e-121 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0173 [flax] [poplar] STIR PF01582 [flax] [poplar] TIR TIR domain CL0023 [flax] [poplar] P-loop_NTPase PF00931 [flax] [poplar] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Lus10012311 pacid=23176760 polypeptide=Lus10012311 locus=Lus10012311.g ID=Lus10012311.BGIv1.0 annot-version=v1.0 ATGTATTTCTTAGCAGGAGCTGCGATAGTTGCTCTGTTTATTGCTCTCTTTAAACTGTTTCTGGGAAGGAGGAGGACGAGAAATCCCACTGACTCTATCA CTGATACTCCTCAACAATCAGATTCTACTTCTACTTCTGAAGATTCTGATTCGGTACCCCTTCCGGTCGGGGAGTATGAAGTGTTCCTCAGTTTTAGAGG TCCGGATACACGCAATAACGTTACAGATATTCTTTACCGTTTCCTCGTTCGCTCGAAAATCCGCACGTTCAGAGACGATGATGAACTCCGTAAGGGGGAA GGGATATGGCCAAACCTTGTCAAAGCCATCGGTCAGTCAAAGATTTCTGTTCTTATCTTCTCGCCTCGTTATGCCGAGAGCAAGTGGTGTCTTAAAGAAC TGGCTGAGATTGTAGAGCATCGAAAGCGAGAGAAAGGCCACGTCATACTTCCCATTTTTTATAAGGTGGATCCTAGAGACATACGCCATCATACGGGGCC TTACGAAAGTGCTTTTCAACAGTATAAGAGGAATAATTTTGATGAAGAGACCATACAAAGTTGGAAAGTAGCTCTGAATGAGGTTGGATCTTTGAAAGGG TGGCACATCAAAGTCGAAGAAGAGGTTGCAGATGTTGCAGATGTTGTTTCTGGAGTTGTATGGTCACATCTAATCAAGAATAACAATACATTAGAGACTG ATGAGTTGGTTGGAATCGATAACTCCATGGAACAAGTTGTAGACATGTTAGATCTAGGCGCTGAAGGTGTGAATCTAGTTGGCATTCATGGTATGGGTGG TATTGGGAAAACCACTCTTGCAACAGCGGTCTATAACAAAGTTTCTACCTGCTTCGATCGTTATAGTTTTGTGAAAGATATACGAGAAACACAAAAACAA ACAGATGGTGTTCTCATCTTACAAAAGAAGTTACTTTCTAATATCTTAAAGATGGAATCAGTTGGATCAGAAGCAAAGCAAATCATACGGGAGAGGGTTA CTCAGTTCAAGATCCTTGTGGTTCTCGATGATGTAGACGAAAGGTTCAACTTCGAGGAAGTCCTTGGAAAAGTGGAAAGTTTTGCTCCAGGAAGTCGTTT TATCATCACGTCGAGAGATATAAAGCTCTTGACGGTGTTAAGAGAAAGTCAAAGCAAGTTGTACGAAGTTCAAGGAATGAATCCTAGAAGCTCGCTTCAA TTATTTTGCAAGCATGCGTTCAAAAAGGATTTTCCTCTTCCAGGTTTTGAGGTATTATCAGAAAACGTTGTATCTACTACAGGAGGACTTCCATTGACAC TTAAGGTTATAGGATCATTTCTTTTTCGAGAAGAAGAATTTGTTTGGAAAGGCAAATTGGAGCAATTACAAGAAATGCCGGAGAAAGGTGTATTGGATAG GTTAATGATAAGCTATGATGCTTTAAACTATGAAGCACAACAAATATTTCTAGATATTGCTTGCTTTCACATTGGAACGGATAAAGAAATTGCTTCTTAC ATGTGGACCGATTGCAAATTTCATCCTGTCGTTAACGTCAATGTTCTTGTTCAAAAATCTATGATCAAGATTGGAAAGGAAAATGGATTCCAAATGCATG ATCAACTTAGAGATATGGGAAGAGAAATTGTCCGTAGAGAAAGTATAGAATATCCATGGATGAGAAGTAGAATATGGTCAGACAAGGAAGCTATGGAGCT ATTAGTTAATAACAAGGGAACAAAGCAAGTCAAAGCCATTAGACTTGACTTATCATCCTATATCGAATTAAATTCCGTTCAAAGTGAATGTTTTACGAAT TTGTCGGAGTTAAGATATGTTGATGCAGGATTCATGAGTTTGATTGGAGACTTCAACCATTTTCTTCCGAACTTGAAATGGATTAAAAGTTTTAGCAATC TTATGGGGAGGATCAATATGAAACAGATTATTGTAGTTGATGTCTACAATTTGGGAGATGACTGCATCCAAATCAAGGAGGCAAAGAAGCTGAAATTTCT GACTCTTCGCGATTGTAAGAAGATGAGTAAACTTCCAGAATTTCCAGAGAGCCTAGAGATGCTACATCTTATTTGTTTCTCCAATAAAGAGGAAGATATG GAGCTTGGGAATCTGCAGAACTTAAAAGTACTAATTTTACGTTCTTGTACACTGGGGAGGATCAAAGGTGGCACTTTTGGTATGATGAAGGGGCTTCGAG AGCTCAATCTCACTGAAATTAAATGTGATTTTCATAATTTCAGAAGAGTGATTGCCGATATTGGAGAACTGTTATCTCTCGAAAGCTTGGATTTTAACAG TCCTGCCCTCAAGGACGTTTTGAAAGGGATTAAGCTCCCGAAAAGCTTAAAGGTGCTAAACACTTCATCTTCTTTTGATAATCTTTGGGAGTTGTTGGAT TTAGAGGAATTCAGTGTTGAGAATAAGAGGAGGACGATAGAGATTGTGATGTCGCCAGCAGCTAAGTTGAAATCGATGATGTTGCACTCCAAGACGATGA TAAGTATAGTTGAAGGTCAGACCACTATGTTACCATCATCCCTCACTATCGTACACATTTCCGATCTGAAATCTGCTCGAATCCCAAATCTGAAGAATCT GGGGAACTTGACCAAGTTAAGACTTTTCAATAGTCCTTATCTGGAAGAAATCCAAGGCCTTGGAGGGCTGAAATCATTAGAGACTCTCCAGATGGGTGAC ATGAAAAAGTTAGTTGATATTGAGGGCCTCGGAAATCTCATGTCTTCTTCCAACTGCAAGTTGACAGAAGTGGTGATAGCCGGATGCCCTCTTCTTCGTG CATTCCAGACATTCGAACAACATGATGATGATGATACTAATGATGCAATACGAATCGAATCTTTACTCAGCCTGAAGATAATTGCATGCCCATTGATGGA TTGTAGATCAATACCCAAAGTGTCCAAGTTTCCAAGACTTAGAGAGTTGTCAATTTGCGAGATCGGTTGGAAGATCGATGATGAAGCAGCCTGCCATCAG GAGCTATTGGAAGGGCTTGACAACCTTGTAGAGTTGGTTGAATTGCAAGTCTCCCGTTTACCGAATGTAGAGAGACTACCTTCTCTATCAAAGCTAACCA AGTTGACCAAGTTAATGGTGTCTCGCCTTCCATGTTTGCGAGAGATTGTTGGACTTGGAGAATTGAAGTCGTTAAAAGAGTTAGAAGTGAGTGGTTGCCT TTCCTTGGAAAGATTGTCCAATCTGGAGGGTCTACCCTACTCCAACACCTATCATATAGAGTTGGACTTGAGAGGATGTATAAATTTCAGTAACGTGGAT ACTGATCTTTCTCCCCTCACCACCGCAGGAGCCGCTCTAAGTACAGTTTTATTCATCAAGTGGCCACATGAACCATATGAGGAATCTGACGACGACGACG ATATGAGTGAGGAATTTGACGACGATATGAGTTGTAGAACAGCAGCAATGAATCACTTAGCACCAACTGCAACAGTTGCTGTGTTTATTGCTCTCTTCAA GCTGTTTCTCGGCAGGAGGAGGACGAGAAATTCCAATGACTCAAACAGTATTACTTCTCAACAATCAGATTCTGTTTCTACTTCTGGAGATTCTGATTTG AGGCCCCTTCCAATCTGGGAGTACGAGGTGTTTCTGTCCAACTTTCCAAGACTTAGGAAGTTGTCAATTGGGGACATCGGTTCAAATATCAATGTTGAAT CAGCCAGCAACAGGATCAGCTACTGGAATGGCCTGACAATCTTGGAGAGTTGGTTGAACTGCAAGTCTCCGGTTTAG
AA sequence Show only first row Show all	>Lus10012311 pacid=23176760 polypeptide=Lus10012311 locus=Lus10012311.g ID=Lus10012311.BGIv1.0 annot-version=v1.0 MYFLAGAAIVALFIALFKLFLGRRRTRNPTDSITDTPQQSDSTSTSEDSDSVPLPVGEYEVFLSFRGPDTRNNVTDILYRFLVRSKIRTFRDDDELRKGE GIWPNLVKAIGQSKISVLIFSPRYAESKWCLKELAEIVEHRKREKGHVILPIFYKVDPRDIRHHTGPYESAFQQYKRNNFDEETIQSWKVALNEVGSLKG WHIKVEEEVADVADVVSGVVWSHLIKNNNTLETDELVGIDNSMEQVVDMLDLGAEGVNLVGIHGMGGIGKTTLATAVYNKVSTCFDRYSFVKDIRETQKQ TDGVLILQKKLLSNILKMESVGSEAKQIIRERVTQFKILVVLDDVDERFNFEEVLGKVESFAPGSRFIITSRDIKLLTVLRESQSKLYEVQGMNPRSSLQ LFCKHAFKKDFPLPGFEVLSENVVSTTGGLPLTLKVIGSFLFREEEFVWKGKLEQLQEMPEKGVLDRLMISYDALNYEAQQIFLDIACFHIGTDKEIASY MWTDCKFHPVVNVNVLVQKSMIKIGKENGFQMHDQLRDMGREIVRRESIEYPWMRSRIWSDKEAMELLVNNKGTKQVKAIRLDLSSYIELNSVQSECFTN LSELRYVDAGFMSLIGDFNHFLPNLKWIKSFSNLMGRINMKQIIVVDVYNLGDDCIQIKEAKKLKFLTLRDCKKMSKLPEFPESLEMLHLICFSNKEEDM ELGNLQNLKVLILRSCTLGRIKGGTFGMMKGLRELNLTEIKCDFHNFRRVIADIGELLSLESLDFNSPALKDVLKGIKLPKSLKVLNTSSSFDNLWELLD LEEFSVENKRRTIEIVMSPAAKLKSMMLHSKTMISIVEGQTTMLPSSLTIVHISDLKSARIPNLKNLGNLTKLRLFNSPYLEEIQGLGGLKSLETLQMGD MKKLVDIEGLGNLMSSSNCKLTEVVIAGCPLLRAFQTFEQHDDDDTNDAIRIESLLSLKIIACPLMDCRSIPKVSKFPRLRELSICEIGWKIDDEAACHQ ELLEGLDNLVELVELQVSRLPNVERLPSLSKLTKLTKLMVSRLPCLREIVGLGELKSLKELEVSGCLSLERLSNLEGLPYSNTYHIELDLRGCINFSNVD TDLSPLTTAGAALSTVLFIKWPHEPYEESDDDDDMSEEFDDDMSCRTAAMNHLAPTATVAVFIALFKLFLGRRRTRNSNDSNSITSQQSDSVSTSGDSDL RPLPIWEYEVFLSNFPRLRKLSIGDIGSNINVESASNRISYWNGLTILESWLNCKSPV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G36930			Disease resistance protein (TI...		Lus10012311 [exp]	0	1
AT4G10930			unknown protein		Lus10023068 [exp]	9.9	0.8209
AT4G14910		HISN5B, IGPD	HISTIDINE BIOSYNTHESIS 5B (.1....		Lus10024033 [exp]	11.3	0.7916
AT2G31290			Ubiquitin carboxyl-terminal hy...		Lus10003062 [exp]	14.1	0.7998
AT5G02930			F-box/RNI-like superfamily pro...		Lus10024702 [exp]	14.1	0.7943
AT4G32700		TEB	TEBICHI, helicases;ATP-depende...		Lus10007673 [exp]	16.1	0.7984
AT5G45190			Cyclin family protein (.1.2)		Lus10021927 [exp]	17.8	0.8182
AT5G14520			pescadillo-related (.1)		Lus10001362 [exp]	21.2	0.8172
AT3G45630			RNA binding (RRM/RBD/RNP motif...		Lus10018125 [exp]	30.4	0.8007
AT5G65540			unknown protein		Lus10025712 [exp]	31.4	0.8071
AT1G17450			B-block binding subunit of TFI...		Lus10006533 [exp]	34.0	0.7839

Compare expression of checked genes

Lus10012311 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.