Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48150 660 / 0 GRAS PAT1 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) AT1G50600 594 / 0 GRAS SCL5 scarecrow-like 5 (.1) AT2G04890 573 / 0 GRAS SCL21 SCARECROW-like 21 (.1) AT4G17230 489 / 3e-169 GRAS SCL13 SCARECROW-like 13 (.1) AT1G21450 418 / 1e-140 GRAS SCL1 SCARECROW-like 1 (.1) AT1G66350 243 / 5e-74 GRAS RGL1 RGA-like 1 (.1) AT3G03450 241 / 5e-73 GRAS RGL2 RGA-like 2 (.1) AT1G14920 241 / 8e-73 GRAS RGA2, GAI RESTORATION ON GROWTH ON AMMONIA 2, GIBBERELLIC ACID INSENSITIVE, GRAS family transcription factor family protein (.1) AT2G01570 237 / 5e-71 GRAS RGA1 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) AT1G07530 240 / 2e-70 GRAS SCL14, ATGRAS2 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006369 [exp] 1023 / 0 AT5G48150 633 / 0.0 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Lus10016596 [exp] 648 / 0 AT5G48150 624 / 0.0 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Lus10000539 [exp] 529 / 0 AT4G17230 617 / 0.0 SCARECROW-like 13 (.1) Lus10017554 [exp] 528 / 0 AT4G17230 612 / 0.0 SCARECROW-like 13 (.1) Lus10035840 [exp] 514 / 4e-178 AT5G48150 498 / 2e-172 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Lus10036623 [exp] 492 / 1e-170 AT5G48150 486 / 9e-169 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Lus10003772 [exp] 434 / 1e-151 AT5G48150 439 / 2e-154 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Lus10042776 [exp] 417 / 2e-140 AT1G21450 682 / 0.0 SCARECROW-like 1 (.1) Lus10029747 [exp] 417 / 2e-140 AT1G21450 682 / 0.0 SCARECROW-like 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G164400 [exp] 805 / 0 AT5G48150 716 / 0.0 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Potri.001G361700 [exp] 650 / 0 AT1G50600 637 / 0.0 scarecrow-like 5 (.1) Potri.016G009700 [exp] 558 / 0 AT4G17230 675 / 0.0 SCARECROW-like 13 (.1) Potri.006G016200 [exp] 544 / 0 AT4G17230 641 / 0.0 SCARECROW-like 13 (.1) Potri.001G409500 [exp] 521 / 0 AT5G48150 518 / 3e-180 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Potri.011G131100 [exp] 514 / 1e-178 AT1G50600 505 / 8e-174 scarecrow-like 5 (.1) Potri.005G186500 [exp] 444 / 5e-151 AT1G21450 685 / 0.0 SCARECROW-like 1 (.1) Potri.002G073400 [exp] 437 / 5e-148 AT1G21450 707 / 0.0 SCARECROW-like 1 (.1) Potri.001G326000 [exp] 283 / 3e-87 AT1G66350 296 / 2e-92 RGA-like 1 (.1) Potri.010G110700 [exp] 256 / 3e-78 AT2G01570 764 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03514 [flax] [poplar] GRAS GRAS domain family
Representative CDS sequence Show only first row Show all	>Lus10012323 pacid=23176795 polypeptide=Lus10012323 locus=Lus10012323.g ID=Lus10012323.BGIv1.0 annot-version=v1.0 ATGTCGGGCAGCCTATATTATCAACCGATGCAAGAATTCGAGGCGAACTACATGCCTCAGTTCCAACATTTAGGTCACCAGCTCTGTTACAATGGTAGCA GCAGCCAAGCAACTCACTTCCCCTTCCAGACCGAACAATACTGCACATTGGAGTCATCTTCCCTCAATGGCACCACCTATGCTGCAATCTACAGCAACTT TTCGCCAAATGGAAGCCCGATGTCACAGCACGAGTCTCCTATAAGCAGCTCGTGCATTACCGACGATGCTAATGACATCAAACACAAGTTGAGGGAGTTG GAGACTGCAATGTTGGGTCCTGATTCTGATAACTTTGTTATGAGCATGGATGGTAGAACTGTTCAGGAAGGGATTAAGATCGAGTCCCCGGAGGTGGACT GTTTAAGGGAAATAATGGGGGCAATATCTAGAGGGGAACTTAAACAGGTTCTCGTTGCCTGCGCCAAGGCAGTATCCGAAAACGATCAGTTGATAGCACA ATGGTTGATCGACGAGCTTCGCAACATGGTGTCAGTGTCCGGGGAACCTATTCAAAGGCTAGGTGCATATATGTTGGAAGGACTCGTTGCTAGGATGTCC TCCTCCGGGAGCTCGATCTGCAAGGCCTTGAGATGTAAAGATCCAGCGAGTGCCGATCTGCTCTCTTATATGCACATTCTGTACGAGGTTTGTCCTTATC TCAAATTCGGGTACATGTCTGCAAATGGTGCCATTGCAGAAGCTATGAAGGGCGAAAACCGGGTCCACATTGTGGACTTTCAGATTGGTCAAGGGAGTCA ATGGATCAGTCTTATTCAGGCATTTGCAGCTAGGCCAGGCGGGCCCCCATTCATCCGGATTACCGGGGTTGATGACTCCATGTCAGCCTATGCACGCGGA GGAGGACTGAACATTGTTGGGAAGAGGCTCTCTAAGCTGGCCAAGTCATTCAAGGTACCATTCGAGTTCCATGCTGCTGCTGCACTGAATGGCTGCAAAA TCCAAGTGGAGAATCTCGAAATTCGATCGGGGGAAGCTCTAGCTGTGAACTTTGCCTTCATGCTTCATCACATGCCTGACGAGAGTGTCAGCACCGAGAA TCATCGCGACCGGCTGTTGAGGCTGGTAAAAGGCCTGTCTCCGAAAGTGGTGACCCTTGTCGAGCAGGAAGCCAACACAAACACCGCTGCATTCTTCCCG AGGTTTCTCGAGACACTAGACTACTATACAGCAATGTTCGAGTCGATGGACGTGACCCTGCAACGAGACCATAAAGACCGGATCAGCATCGAGCAGCATT GCCTCGCAAAGGATGTCGTCAACGTGATTGCTTGCGAGGGTGCCGAGAGGGTTGAACGACATGAACTTCTCGGTAAATGGAAGTCGAGGTTTTCTATGGC GGGATTTAGTCCGTGCCCTTTGAGCTCTTTGGTAAACGCCACCATAAAAACGCTGCTGGCGAACTACAGCAAGCAATACAGGCTTGAAGAGAAGGCTGGT GCTTTGTATCTTGGATGGAAGAACAGAGATTTGGTAGCATCTTGTGCATGGAAGATAACTGAAAGGCACTAA
AA sequence Show only first row Show all	>Lus10012323 pacid=23176795 polypeptide=Lus10012323 locus=Lus10012323.g ID=Lus10012323.BGIv1.0 annot-version=v1.0 MSGSLYYQPMQEFEANYMPQFQHLGHQLCYNGSSSQATHFPFQTEQYCTLESSSLNGTTYAAIYSNFSPNGSPMSQHESPISSSCITDDANDIKHKLREL ETAMLGPDSDNFVMSMDGRTVQEGIKIESPEVDCLREIMGAISRGELKQVLVACAKAVSENDQLIAQWLIDELRNMVSVSGEPIQRLGAYMLEGLVARMS SSGSSICKALRCKDPASADLLSYMHILYEVCPYLKFGYMSANGAIAEAMKGENRVHIVDFQIGQGSQWISLIQAFAARPGGPPFIRITGVDDSMSAYARG GGLNIVGKRLSKLAKSFKVPFEFHAAAALNGCKIQVENLEIRSGEALAVNFAFMLHHMPDESVSTENHRDRLLRLVKGLSPKVVTLVEQEANTNTAAFFP RFLETLDYYTAMFESMDVTLQRDHKDRISIEQHCLAKDVVNVIACEGAERVERHELLGKWKSRFSMAGFSPCPLSSLVNATIKTLLANYSKQYRLEEKAG ALYLGWKNRDLVASCAWKITERH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G48150	GRAS	PAT1	phytochrome a signal transduct...		Lus10012323 [exp]	0	1
AT3G14460			LRR and NB-ARC domains-contain...		Lus10006793 [exp]	2.0	0.8318
AT5G51740			Peptidase family M48 family pr...		Lus10038897 [exp]	4.9	0.8218
AT1G19440		KCS4	3-ketoacyl-CoA synthase 4 (.1)		Lus10001657 [exp]	5.7	0.8211
AT3G58030			RING/U-box superfamily protein...		Lus10004162 [exp]	13.7	0.7776
AT4G18450	AP2_ERF		Integrase-type DNA-binding sup...		Lus10005281 [exp]	14.2	0.6832
AT1G70000	MYB		myb-like transcription factor ...		Lus10036678 [exp]	16.9	0.7879
AT5G67190	AP2_ERF	DEAR2	DREB and EAR motif protein 2 (...		Lus10009373 [exp]	17.2	0.7843
AT5G07840		PIA1	phytochrome interacting ankyri...		Lus10033816 [exp]	18.9	0.8118
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10009859 [exp]	20.2	0.7887
AT2G36780			UDP-Glycosyltransferase superf...		Lus10023939 [exp]	21.0	0.7824

Compare expression of checked genes

Lus10012323 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.