Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10010 150 / 1e-41 AAP8, ATAAP8 amino acid permease 8 (.1) AT1G58360 147 / 1e-40 NAT2, AAP1 NEUTRAL AMINO ACID TRANSPORTER 2, amino acid permease 1 (.1) AT5G49630 146 / 4e-40 AAP6 amino acid permease 6 (.1) AT5G09220 126 / 7e-33 AAP2 amino acid permease 2 (.1) AT1G44100 122 / 3e-31 AAP5 amino acid permease 5 (.1) AT1G77380 117 / 2e-29 AAP3, ATAAP3 amino acid permease 3 (.1) AT5G63850 115 / 5e-29 AAP4 amino acid permease 4 (.1) AT5G23810 91 / 2e-20 AAP7 amino acid permease 7 (.1.2) AT1G71680 59 / 1e-09 Transmembrane amino acid transporter family protein (.1) AT1G24400 58 / 3e-09 ATLHT2, AATL2, LHT2 ARABIDOPSIS LYSINE HISTIDINE TRANSPORTER 2, AMINO ACID TRANSPORTER-LIKE PROTEIN 2, lysine histidine transporter 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033760 [exp] 258 / 5e-83 AT1G10010 506 / 5e-178 amino acid permease 8 (.1) Lus10035663 [exp] 220 / 3e-68 AT1G10010 569 / 0.0 amino acid permease 8 (.1) Lus10037248 [exp] 218 / 2e-67 AT1G10010 563 / 0.0 amino acid permease 8 (.1) Lus10012444 [exp] 166 / 3e-47 AT1G10010 535 / 0.0 amino acid permease 8 (.1) Lus10033759 [exp] 163 / 3e-46 AT1G58360 533 / 0.0 NEUTRAL AMINO ACID TRANSPORTER 2, amino acid permease 1 (.1) Lus10007235 [exp] 140 / 5e-38 AT5G49630 720 / 0.0 amino acid permease 6 (.1) Lus10028236 [exp] 137 / 1e-36 AT5G49630 687 / 0.0 amino acid permease 6 (.1) Lus10028546 [exp] 124 / 2e-32 AT1G77380 552 / 0.0 amino acid permease 3 (.1) Lus10018852 [exp] 124 / 4e-32 AT1G77380 702 / 0.0 amino acid permease 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G085000 [exp] 154 / 4e-43 AT1G58360 546 / 0.0 NEUTRAL AMINO ACID TRANSPORTER 2, amino acid permease 1 (.1) Potri.007G100100 [exp] 144 / 4e-39 AT5G09220 768 / 0.0 amino acid permease 2 (.1) Potri.009G133600 [exp] 142 / 2e-38 AT5G09220 711 / 0.0 amino acid permease 2 (.1) Potri.005G068900 [exp] 139 / 2e-37 AT5G09220 799 / 0.0 amino acid permease 2 (.1) Potri.002G112100 [exp] 135 / 7e-36 AT5G49630 691 / 0.0 amino acid permease 6 (.1) Potri.001G470200 [exp] 131 / 9e-35 AT5G09220 543 / 0.0 amino acid permease 2 (.1) Potri.002G079500 [exp] 129 / 7e-34 AT1G77380 766 / 0.0 amino acid permease 3 (.1) Potri.002G079700 [exp] 127 / 5e-33 AT1G77380 756 / 0.0 amino acid permease 3 (.1) Potri.011G167200 [exp] 126 / 6e-33 AT5G23810 518 / 0.0 amino acid permease 7 (.1.2) Potri.002G080066 [exp] 125 / 5e-32 AT1G77380 751 / 0.0 amino acid permease 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF01490 [flax] [poplar] Aa_trans Transmembrane amino acid transporter protein
Representative CDS sequence Show only first row Show all	>Lus10012443 pacid=23145789 polypeptide=Lus10012443 locus=Lus10012443.g ID=Lus10012443.BGIv1.0 annot-version=v1.0 ATGCAAGGGCACCCGCCACAATCAAGTCCAGGGGCTGCGCATTTGGTAGGAGAAGTATACACCCAGGCATCCTTCTCTGTCAACCCAACGATCAACACAA TTCGTAATGCTCCAACACATCCCAGCCTCCATCAATGCCCCGGGCCCAATTTCGGCACCCGAACTTACACTTACAGCGGCGCTGTCAAGGCCCATTTAGG GGGGCTCAGGTCAAAGTTCTGTGGAGTAGCTCAGTTTGTATATCTCCTCGGAACTTGTATTGGATACACCATCGCTACACCTATTAGTATGGGCCAGCTC CCCGACTTTCATAACCTTGCCTTCATCTCCGTCATTGCCGCCGTTATGTCCTTCGCTTACTCCATCATCAGCCTTGGTCTCTGTGTGGCCATCATCATAA AAAATCATGGTCATGCGGACACAGGGCTGATAGGAGTGAGGGCCGGAGAAAGAGGCCTTACAGAATTGTTGAAGGTGTTCGACGTTTTACAGGCCATCGG GGACATAGCATTTGCCTATAGTTATGCACCAATCCTTCTTGAAATTGAGGTATTGATTCAGTCAACATTCCAAATAGTGGAAGAATGGTGCAAACAAAAC TGGTCAAAAAAGGGCTTCCTGCAAAAAGAGTATCCGGTGAAAATTCCTGTGATAGGAAAATTGAGACTCAATGGGTTCAGGCTGATTTGGAGAACGCTGT ACGTGATGGGTACCTGTGTAGTGGGGATGGTGTTCCCGTACTTCAACAGCGTGTTGGGGTTGCTTGGTGCCTTAGGATTTTGGCCATTGACGATCTACTT CCCGATTGAGATGTACAAAAAACAGGCCAAAGTGGAGCGGTTCAGCTCTACCTGGATATGGGTCACCATCTTAAGTGGACTCTGCTTCATTATTTCCATA CTCTGCACCGCTGGATCTGTTGATGGCATCATCACTTCCCTTTAA
AA sequence Show only first row Show all	>Lus10012443 pacid=23145789 polypeptide=Lus10012443 locus=Lus10012443.g ID=Lus10012443.BGIv1.0 annot-version=v1.0 MQGHPPQSSPGAAHLVGEVYTQASFSVNPTINTIRNAPTHPSLHQCPGPNFGTRTYTYSGAVKAHLGGLRSKFCGVAQFVYLLGTCIGYTIATPISMGQL PDFHNLAFISVIAAVMSFAYSIISLGLCVAIIIKNHGHADTGLIGVRAGERGLTELLKVFDVLQAIGDIAFAYSYAPILLEIEVLIQSTFQIVEEWCKQN WSKKGFLQKEYPVKIPVIGKLRLNGFRLIWRTLYVMGTCVVGMVFPYFNSVLGLLGALGFWPLTIYFPIEMYKKQAKVERFSSTWIWVTILSGLCFIISI LCTAGSVDGIITSL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G10010		AAP8, ATAAP8	amino acid permease 8 (.1)		Lus10012443 [exp]	0	1

Compare expression of checked genes

Lus10012443 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.