Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G27120 541 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G45500 211 / 2e-62 AAA-type ATPase family protein (.1.2) AT1G80350 180 / 2e-50 FTR, FRC2, FRA2, BOT1, ATKTN1, AAA1, LUE1, ERH3, MAD5 KATANIN 1, FAT ROOT, FURCA2, FRAGILE FIBER 2, ECTOPIC ROOT HAIR 3, BOTERO 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G34560 174 / 2e-49 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT2G27600 159 / 2e-43 ATSKD1, VPS4, SKD1 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) AT3G19740 160 / 5e-42 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G02890 153 / 1e-39 AAA-type ATPase family protein (.1.2) AT4G02480 150 / 2e-38 AAA-type ATPase family protein (.1) AT1G50140 149 / 2e-38 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT4G28000 147 / 7e-38 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041563 [exp] 851 / 0 AT3G27120 679 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10038001 [exp] 217 / 7e-65 AT2G45500 679 / 0.0 AAA-type ATPase family protein (.1.2) Lus10009233 [exp] 215 / 3e-64 AT2G45500 670 / 0.0 AAA-type ATPase family protein (.1.2) Lus10011477 [exp] 179 / 6e-50 AT1G80350 904 / 0.0 KATANIN 1, FAT ROOT, FURCA2, FRAGILE FIBER 2, ECTOPIC ROOT HAIR 3, BOTERO 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10023115 [exp] 179 / 6e-50 AT1G80350 906 / 0.0 KATANIN 1, FAT ROOT, FURCA2, FRAGILE FIBER 2, ECTOPIC ROOT HAIR 3, BOTERO 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10038499 [exp] 170 / 1e-47 AT2G34560 579 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10019537 [exp] 162 / 9e-45 AT2G27600 791 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) Lus10004891 [exp] 160 / 9e-44 AT2G27600 801 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) Lus10023310 [exp] 157 / 1e-41 AT2G34560 551 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G331200 [exp] 624 / 0 AT3G27120 661 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.001G331300 [exp] 295 / 8e-96 AT3G27120 400 / 2e-137 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.014G071900 [exp] 221 / 4e-66 AT2G45500 696 / 0.0 AAA-type ATPase family protein (.1.2) Potri.003G057800 [exp] 184 / 6e-52 AT1G80350 814 / 0.0 KATANIN 1, FAT ROOT, FURCA2, FRAGILE FIBER 2, ECTOPIC ROOT HAIR 3, BOTERO 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.001G176900 [exp] 183 / 2e-51 AT1G80350 809 / 0.0 KATANIN 1, FAT ROOT, FURCA2, FRAGILE FIBER 2, ECTOPIC ROOT HAIR 3, BOTERO 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.004G065100 [exp] 170 / 6e-48 AT2G34560 600 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.004G184500 [exp] 169 / 2e-47 AT2G27600 740 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) Potri.009G144300 [exp] 167 / 2e-46 AT2G27600 776 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) Potri.011G085200 [exp] 165 / 6e-46 AT2G34560 577 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.010G237100 [exp] 164 / 1e-45 AT2G27600 702 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00004 [flax] [poplar] AAA ATPase family associated with various cellular activities (AAA)
Representative CDS sequence Show only first row Show all	>Lus10012530 pacid=23143890 polypeptide=Lus10012530 locus=Lus10012530.g ID=Lus10012530.BGIv1.0 annot-version=v1.0 ATGTATGAGGATTGCATGATTGTGGATAATTATCCGTCATACACTAATCCTAGAGGTACTGGTCTCTCAAACTATGTGAAAATTGAAGAGGAAGAAAAGG TTTCTGGAAATCCACTGGGGTCAAAACGTAGTGGTCTCTCAAACTATGTGAAAATTGAAGAGGAAGACAAGGTTTCTGGAAACCCACTGGGGTCAAAGCG TACTGGTCTCTCAAACTATGTGAAAATTGAAGAGGAAGAAAAGGTTTCTGGAACTCTACTGGGGTCAAAACGTTCATATATGGAGACCAGGAGCCCTAGA AATGACAATCCAAAGTCGCCAGCCTGTAAAGAGGAGTCAAATATAGACGGTTTTGGGGATGGATTCGTAACTGCAAGAGCAAAATTGGCAATGGAAGTTA GACAAAAGAAAGGGTTGACAAGATCGCCAAATGCATGCGTCTCCCCACAGACTGACAACATAAATCGGGTTTATGGTACACGGTCTTATGGTTACTCACG CCATGGAATCCGTGGGAATTTTGTTCCTCCAATAAGAACCAACGGGGCAAATTCTGGAAATATGAGTGCCCGAGTAACAGGAAAGAATGATGACACAATA GATGACTCAACAAAAAATTGGATGGAAATTCTATGTGGTCCAGATGGCGAGCTTCCTGAAAAACTGAGGAACCTGGAACCTCGTCTTATTGAGCATGTCA GCAATGAAATTATGGATGGTGATCTTAATGTGCGGTGGAATGATATTGCTGGATTGGAGCATGCTAAAAAGTGTGTCGCTGAAATGGTGATCTGGCCATT GCTGCGACCTGACTTATTCAAAGGATGTCGTTCTCCCGGAAAAGGCCTTCTCCTCTTTGGCCCGCCTGGAACAGGGAAGACAATGATTGGGAAAGCCATA GCTGGTGAGGCAAAAGCAACATTTTTCTACATATCCGCCAGTTCTTTGACAAGCAAGTGGATTGGCGAGGGTGAAAAGCTGGTTAGGGCCCTATTTGGTG TCGCCTGGTGTCGTCAGCCGGCTGTTATTTTTGTTGACGAGATAGATTCACTTTTGTCTCAGCGCAAGTCAGAAGGTGAACATGAATCTAGCAGACGTCT GAAAACACAATTCCTGATTGAGATGGAAGAATTTAACAGTGGCAGGGCAACAAATCGGCCTCAGGAACTTGATGAAGCAGCAAGGAGGCGACTTACCAAA AGACTTTACATCCCCTTACCTTTATCAGGATACTCAGGATCAGACATGAAAGATTTAGTGAAAGATGCATCACTGGGACCCCTAAGGGAAGCCTTTAGAC AAGGCTCAGAAATTACGATGGTGAGAAACGAGGACATGCGCCCTGTTACTCTTCAGGACTTCGAGGATTCATTGCAAGAAGTAAGGCCGTCCGTTTCTCC GACTGAGCTGGGTGTCTATGATGAGCGGAACAAACAATTTGGAAGCTTATCCCTTTAG
AA sequence Show only first row Show all	>Lus10012530 pacid=23143890 polypeptide=Lus10012530 locus=Lus10012530.g ID=Lus10012530.BGIv1.0 annot-version=v1.0 MYEDCMIVDNYPSYTNPRGTGLSNYVKIEEEEKVSGNPLGSKRSGLSNYVKIEEEDKVSGNPLGSKRTGLSNYVKIEEEEKVSGTLLGSKRSYMETRSPR NDNPKSPACKEESNIDGFGDGFVTARAKLAMEVRQKKGLTRSPNACVSPQTDNINRVYGTRSYGYSRHGIRGNFVPPIRTNGANSGNMSARVTGKNDDTI DDSTKNWMEILCGPDGELPEKLRNLEPRLIEHVSNEIMDGDLNVRWNDIAGLEHAKKCVAEMVIWPLLRPDLFKGCRSPGKGLLLFGPPGTGKTMIGKAI AGEAKATFFYISASSLTSKWIGEGEKLVRALFGVAWCRQPAVIFVDEIDSLLSQRKSEGEHESSRRLKTQFLIEMEEFNSGRATNRPQELDEAARRRLTK RLYIPLPLSGYSGSDMKDLVKDASLGPLREAFRQGSEITMVRNEDMRPVTLQDFEDSLQEVRPSVSPTELGVYDERNKQFGSLSL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G27120			P-loop containing nucleoside t...		Lus10012530 [exp]	0	1
AT1G35530			DEAD/DEAH box RNA helicase fam...		Lus10009444 [exp]	4.7	0.9257
AT2G07690		MCM5	MINICHROMOSOME MAINTENANCE 5, ...		Lus10019592 [exp]	13.0	0.9213
AT1G44900		ATMCM2, MCM2	MINICHROMOSOME MAINTENANCE 2, ...		Lus10009683 [exp]	14.1	0.9183
AT1G03470			Kinase interacting (KIP1-like)...		Lus10040904 [exp]	20.5	0.9130
AT4G39860			unknown protein		Lus10041695 [exp]	21.2	0.8526
AT1G48310		CHR18, CHA18	chromatin remodeling factor18 ...		Lus10039409 [exp]	22.0	0.8177
AT2G44190		EMB3116, EDE1, ...	QWRF domain containing 5, EMBR...		Lus10038729 [exp]	23.7	0.9055
AT3G16490		IQD26	IQ-domain 26 (.1)		Lus10043033 [exp]	24.4	0.9000
AT3G22780	CPP	ATTSO1, TSO1	CHINESE FOR 'UGLY', Tesmin/TSO...		Lus10002033 [exp]	26.5	0.9040
AT4G33270		AtCDC20.1, CDC2...	cell division cycle 20.1, Tran...		Lus10006851 [exp]	27.6	0.9012

Compare expression of checked genes

Lus10012530 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.