Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01980 324 / 2e-112 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3), NAD(P)-binding Rossmann-fold superfamily protein (.4) AT1G62610 118 / 1e-31 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3), NAD(P)-binding Rossmann-fold superfamily protein (.4) AT1G63380 117 / 2e-31 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT2G17845 117 / 7e-31 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G55290 115 / 1e-30 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT3G46170 115 / 2e-30 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G55310 110 / 1e-28 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G29260 63 / 2e-11 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G29150 61 / 1e-10 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G47130 60 / 2e-10 AtSDR3 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041545 [exp] 492 / 1e-178 AT3G01980 346 / 6e-121 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3), NAD(P)-binding Rossmann-fold superfamily protein (.4) Lus10006699 [exp] 121 / 7e-33 AT3G46170 404 / 2e-143 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10007038 [exp] 119 / 4e-32 AT1G63380 357 / 7e-125 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10007039 [exp] 109 / 3e-28 AT3G55290 369 / 3e-129 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10006698 [exp] 100 / 5e-25 AT1G63380 385 / 5e-136 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10018323 [exp] 74 / 5e-15 AT3G12800 395 / 4e-139 short-chain dehydrogenase-reductase B (.1) Lus10017129 [exp] 71 / 7e-14 AT3G12800 391 / 7e-138 short-chain dehydrogenase-reductase B (.1) Lus10031170 [exp] 70 / 1e-13 AT3G12800 454 / 8e-163 short-chain dehydrogenase-reductase B (.1) Lus10014227 [exp] 67 / 7e-13 AT3G51680 231 / 3e-75 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G067332 [exp] 385 / 1e-136 AT3G01980 323 / 4e-112 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3), NAD(P)-binding Rossmann-fold superfamily protein (.4) Potri.001G327800 [exp] 380 / 1e-134 AT3G01980 323 / 6e-112 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3), NAD(P)-binding Rossmann-fold superfamily protein (.4) Potri.016G035200 [exp] 110 / 8e-29 AT3G55290 385 / 8e-136 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.012G125900 [exp] 67 / 1e-12 AT3G12800 421 / 9e-150 short-chain dehydrogenase-reductase B (.1) Potri.004G200100 [exp] 66 / 3e-12 AT3G26770 257 / 2e-85 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G025400 [exp] 64 / 1e-11 AT3G12800 427 / 3e-152 short-chain dehydrogenase-reductase B (.1) Potri.016G074000 [exp] 64 / 1e-11 AT1G52340 246 / 5e-81 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G073900 [exp] 62 / 3e-11 AT3G51680 252 / 2e-83 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G073700 [exp] 61 / 1e-10 AT1G52340 242 / 1e-79 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.011G022400 [exp] 60 / 2e-10 AT4G05530 330 / 4e-115 SHORT-CHAIN DEHYDROGENASE/REDUCTASE A, indole-3-butyric acid response 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00106 [flax] [poplar] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10012548 pacid=23143879 polypeptide=Lus10012548 locus=Lus10012548.g ID=Lus10012548.BGIv1.0 annot-version=v1.0 ATGGCGAGTCCGACGAAGAAAGTACTGTTGACCTCTAACGGAGACGAGGTTTCCCTGAGTATTGCCTTCCAGTTAGCCAAAAATGGTTGCAGGTTGGTTC TGATGGGGAATGAGGACTCCCTAAGGCGTGCAAGTGATAAGATAATGAGTACTCTCAAAGGTGCGGCGACCGTTGAAGTGGTAGGGATGGATATGGAAGA GGAAAATGAGCATGTCTATGAAGAAGCAGTGGAGAAGGCAACTAAGATTCTGGGCAACTTGGATGCTTTTGTTCATTGCTATTTCTATGAAGGAAAGATG CAAAACCTTCTAGAGTTCCCAGAGGGTCAGTTCAAGAAGACGGTCAAGATCAACTTCATGGCTCCTTGGTATTTGCTCAAGGCTGTTGGGAGTAGAATGC GTGACCATCGGATCGGAGGTTCGGTCGTATTTGTGACATCGCTGATCGGTGCAGAGAGGGGGATTTATCCGGGAGCTGCAGCATACGGCTCTTGTTCTGC TGGAATCCAGCAATTAGTTAGAAATTCGGCTATGGATATAGGGAAGTACAAGATCCGGGTGAACGCAATTGCAAGAGGGCTGCATCTCGAGGACGAGTTC CCCAAGTCAGTGGGGAAGGAGAGAGCAGAGAAGCTAGTTAAAGATGTAGTCCCTCTCCAGAGATGGTTAGATGTGAAGAATGATGTAGCATCCACTGTCA TCTATTTAATCAGTGACGGTTCACGCTACATGACTGGAACCACGACATTCGTCGATGGAGGCCAGTCCTTGTCAAGACCCCGCCTCAGATCTTTCATGTA G
AA sequence Show only first row Show all	>Lus10012548 pacid=23143879 polypeptide=Lus10012548 locus=Lus10012548.g ID=Lus10012548.BGIv1.0 annot-version=v1.0 MASPTKKVLLTSNGDEVSLSIAFQLAKNGCRLVLMGNEDSLRRASDKIMSTLKGAATVEVVGMDMEEENEHVYEEAVEKATKILGNLDAFVHCYFYEGKM QNLLEFPEGQFKKTVKINFMAPWYLLKAVGSRMRDHRIGGSVVFVTSLIGAERGIYPGAAAYGSCSAGIQQLVRNSAMDIGKYKIRVNAIARGLHLEDEF PKSVGKERAEKLVKDVVPLQRWLDVKNDVASTVIYLISDGSRYMTGTTTFVDGGQSLSRPRLRSFM

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G01980			NAD(P)-binding Rossmann-fold s...		Lus10012548 [exp]	0	1
AT3G26770			NAD(P)-binding Rossmann-fold s...		Lus10012575 [exp]	1.4	0.9593
AT2G46370		FIN219, JAR1	JASMONATE RESISTANT 1, FAR-RED...		Lus10003039 [exp]	2.4	0.9585
AT1G63380			NAD(P)-binding Rossmann-fold s...		Lus10007038 [exp]	2.6	0.9625
AT2G37740	C2H2ZnF	ATZFP10, ZFP10	zinc-finger protein 10 (.1)		Lus10024362 [exp]	4.5	0.9539
AT5G19440			NAD(P)-binding Rossmann-fold s...		Lus10016388 [exp]	4.6	0.9473
AT3G04570	AT-hook	AHL19	AT-hook motif nuclear-localize...		Lus10006577 [exp]	4.7	0.9430
AT4G14410	bHLH	bHLH104	basic Helix-Loop-Helix 104, ba...		Lus10022186 [exp]	4.9	0.9470
AT3G49150			F-box/RNI-like superfamily pro...		Lus10025561 [exp]	5.5	0.9477
AT2G47730		GST6, ATGSTF5, ...	Arabidopsis thaliana glutathio...		Lus10026643 [exp]	5.8	0.9340
					Lus10015758 [exp]	7.3	0.9454

Compare expression of checked genes

Lus10012548 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.