Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G66350 308 / 9e-96 GRAS RGL1 RGA-like 1 (.1) AT3G54220 300 / 3e-91 GRAS SGR1, SCR SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) AT3G03450 296 / 6e-91 GRAS RGL2 RGA-like 2 (.1) AT1G14920 293 / 7e-90 GRAS RGA2, GAI RESTORATION ON GROWTH ON AMMONIA 2, GIBBERELLIC ACID INSENSITIVE, GRAS family transcription factor family protein (.1) AT5G17490 285 / 4e-87 GRAS AtRGL3, RGL3 RGA-like protein 3 (.1) AT2G01570 285 / 2e-86 GRAS RGA1 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) AT5G41920 278 / 5e-86 GRAS GRAS family transcription factor (.1) AT5G48150 263 / 3e-79 GRAS PAT1 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) AT2G04890 259 / 7e-79 GRAS SCL21 SCARECROW-like 21 (.1) AT1G63100 238 / 2e-68 GRAS GRAS family transcription factor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041540 [exp] 771 / 0 AT1G66350 317 / 2e-100 RGA-like 1 (.1) Lus10037055 [exp] 300 / 8e-93 AT1G66350 258 / 5e-80 RGA-like 1 (.1) Lus10036932 [exp] 298 / 7e-92 AT1G66350 258 / 1e-79 RGA-like 1 (.1) Lus10040734 [exp] 299 / 2e-90 AT5G41920 410 / 1e-137 GRAS family transcription factor (.1) Lus10033583 [exp] 295 / 3e-90 AT2G01570 681 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Lus10016496 [exp] 298 / 9e-90 AT3G54220 663 / 0.0 SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) Lus10017626 [exp] 291 / 1e-88 AT2G01570 679 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Lus10017758 [exp] 288 / 8e-88 AT2G01570 454 / 4e-155 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Lus10017930 [exp] 275 / 3e-83 AT1G66350 241 / 2e-73 RGA-like 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G326000 [exp] 686 / 0 AT1G66350 296 / 2e-92 RGA-like 1 (.1) Potri.008G131700 [exp] 318 / 1e-98 AT2G01570 781 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.010G110700 [exp] 316 / 6e-98 AT2G01570 764 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.017G125200 [exp] 312 / 3e-96 AT2G01570 701 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.015G091200 [exp] 305 / 2e-94 AT1G66350 256 / 4e-79 RGA-like 1 (.1) Potri.016G143833 [exp] 311 / 5e-94 AT3G54220 679 / 0.0 SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) Potri.004G089800 [exp] 304 / 3e-93 AT2G01570 709 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.012G093900 [exp] 300 / 1e-92 AT1G66350 257 / 2e-79 RGA-like 1 (.1) Potri.006G114200 [exp] 303 / 9e-91 AT3G54220 639 / 0.0 SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) Potri.005G095100 [exp] 287 / 7e-88 AT1G66350 252 / 3e-77 RGA-like 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03514 [flax] [poplar] GRAS GRAS domain family
Representative CDS sequence Show only first row Show all	>Lus10012554 pacid=23143885 polypeptide=Lus10012554 locus=Lus10012554.g ID=Lus10012554.BGIv1.0 annot-version=v1.0 ATGATAAATTCAGTATGTGGAAGCGTAGGTTCTCTCAAGAGCACTGAGAGCTCATCATGTTCCAAGATGCATCATCAACCAACTTCCCCTAATGGTTCTT CAGTCTCTGAGTCTATGAAAACAACCATGTCTTCTTCTGACATGGATCAACAACAACAACAACAAACAATCCTAACACCACCCAGCCTTAATTTCCCTCC TGCAGTCAAGTTCGAGGTGGACGGAGATGTCGAAATCCAGTCCCCGGATAGCTCCATCTGGGACAGCTTCTTCTCCGATCACGTTGCAGAAGGTGACTTC ATGATCTCTTCCCCTGTCCGGAACACCACCAACTTGTTCCCTTCACCATCAAGCTTCAGTTACAGCACCTATGTCCAAGCAATGCAAGGCCAGAACAGTA GTATTACCGGCTGTTCGCCACCTCGCCATCTCTCTTCCCAGCTTGGTAGTTTCAGCAGTTCCACTTCTCTCAAGGGGAAAGGCCAGAGCCCTCTTCACAG GATGTTCAACTCTCCTAACAACAACAGCCATTTCATGCAGCTCGAGAGCCTCACCGGGATCGATGATTTCTTAGACGATTACAAGGATCATGGTGGTGGC AATACTAGTACTAGTACTAGTAAGATCATGTCATCATCCAGTAGTAATAATGGTGGACCTACCACGGCTCAGCTTTTCGATCTCCCCATCCCTGTATCGT CCATGATGGATTGCTTGACGATGCCTAATCCTCCTTCGAGGTTCTGCGAATCGACAAGTAATTCGTGTGGGACGACTAAGACTCATCAGCTGGTTGAAGA ACGGGAGATGTTTCCTATGGGGCCGCTTGCGAGCCTTTCTGATCGGTTGCAAGAAGAGAGAGATCAGGAGAAGCAAGTGCAAAAACTACAACTACATCAT GCTGCGCCATCGGCTGAGACTACGACAACAGCTCAACAACCGTTGGAACACGCTCAGCAGGCGGGTCTTTCTGGCCATGGTGGCTTGATGGTTCCTCTTC CTGTCGAATCCGAGCAGTTAAAGCGGTTGAGGAATCGAGCCGGGATTACTTCACTATGCTCAATCTTAACTCGTTATCTTTTAGGCGAGTTCGAGCAACT ACAACTACATCATGCTGCACCACCGGCTGAGACTACGACAACAGCTCAACAACCGTTGGAACATGCTCAGCAGGCGGGTCTTGCTGGCCATGGTGGCTTG ATGATTCCTCTTCCTGTCGAATCCGAGCAGGAGCAATCAGACAGTGGGCTGCAACTAGTACACTTGCTCCTTGCATGTGCAGAAGCGGTGGCGAAAGAGG ACTACATGTTAGCAAGAAAATATCTCCACCACCTAAACAGAGTGGTTTCTCCTCTCGGAGACTCCATGCAAAGAGTTGCCGCCTGCTTCACCGAAGCACT TAGCGCCAGGCTGGCAGCCACGCTGGCCACAAAACCAACCACCTCCGCTCCAAGGCCCTTCACCCCATTCCCTTCAAACTCCATGGAAATCCTCAAAATC TACCAAATCCTCTATCAAGCTTGCCCCTACATCAAGTTCGCCCACTTCACCGCCAACCAAGCCATCTTTGAGGCGTTCGAGGCAGAGGAACGTGTCCATG TCATCGACCTCGACATCCTCCAGGGCTACCAATGGCCTGCTTTCATGCAGGCATTGGCAGCCCGACCAGGGGGTGCTCCGTTTCTTCGAATCACAGGAGT CGGATCCTCCCCCGAATGCGTTAGGGAGACTGGCCGGTGTCTAACCGAGCTGGCTCATTCCCTCCACGTCCCCTTCGAGTACCACGCTGTGGCTGAAGAG CTCGAGGACCTCAAACCGCACATGTTCAACCGTAGGGTGGGCGAGGCTCTAGCCGTGAACTCGGTCAACCGGCTACACCGCGTCCCGGGGAGGTCCATCG GACTGCTCTTGGGCATGATCCGTGACCAGGCCCCGAACATTGTGACATTAGTCGAGCAGGAAGCGAGCCACAATGGACCCTACTTCCTGGGGAGGTTCCT CGAGGCGCTTCACTATTACTCGGCCATTTTTGACTCGTTGGACGCTACGTTCCCACCGGATTCGGCCCAGAGGGCGAAGGTGGAACAGTACATATTCGCA CCGGAGATAAGGAACATAGTGGCGTGCGAAGGGGTGGAGAGGACGGAGAGGCACGAGAGGTTGGAGAAGTGGAGGAAGGTGATGGAAGGGAAAGGGTTCA AAGGAGTGGCACTGAGTGGGAACGCGGTGACTCAGTCGAAGATACTGTTGGGTTTGTACTCTTGCGATGGTTATAGGTTGACGGAAGATAACGGTTGCTT GCTGTTGGGGTGGCAAGATAGAGCCATCCTTGCTGCATCTGCATGGAGATGCTGA
AA sequence Show only first row Show all	>Lus10012554 pacid=23143885 polypeptide=Lus10012554 locus=Lus10012554.g ID=Lus10012554.BGIv1.0 annot-version=v1.0 MINSVCGSVGSLKSTESSSCSKMHHQPTSPNGSSVSESMKTTMSSSDMDQQQQQQTILTPPSLNFPPAVKFEVDGDVEIQSPDSSIWDSFFSDHVAEGDF MISSPVRNTTNLFPSPSSFSYSTYVQAMQGQNSSITGCSPPRHLSSQLGSFSSSTSLKGKGQSPLHRMFNSPNNNSHFMQLESLTGIDDFLDDYKDHGGG NTSTSTSKIMSSSSSNNGGPTTAQLFDLPIPVSSMMDCLTMPNPPSRFCESTSNSCGTTKTHQLVEEREMFPMGPLASLSDRLQEERDQEKQVQKLQLHH AAPSAETTTTAQQPLEHAQQAGLSGHGGLMVPLPVESEQLKRLRNRAGITSLCSILTRYLLGEFEQLQLHHAAPPAETTTTAQQPLEHAQQAGLAGHGGL MIPLPVESEQEQSDSGLQLVHLLLACAEAVAKEDYMLARKYLHHLNRVVSPLGDSMQRVAACFTEALSARLAATLATKPTTSAPRPFTPFPSNSMEILKI YQILYQACPYIKFAHFTANQAIFEAFEAEERVHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGSSPECVRETGRCLTELAHSLHVPFEYHAVAEE LEDLKPHMFNRRVGEALAVNSVNRLHRVPGRSIGLLLGMIRDQAPNIVTLVEQEASHNGPYFLGRFLEALHYYSAIFDSLDATFPPDSAQRAKVEQYIFA PEIRNIVACEGVERTERHERLEKWRKVMEGKGFKGVALSGNAVTQSKILLGLYSCDGYRLTEDNGCLLLGWQDRAILAASAWRC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G66350	GRAS	RGL1	RGA-like 1 (.1)		Lus10012554 [exp]	0	1
AT3G28715			ATPase, V0/A0 complex, subunit...		Lus10033022 [exp]	4.5	0.7280
AT3G45140		ATLOX2, LOX2	ARABIODOPSIS THALIANA LIPOXYGE...		Lus10035232 [exp]	7.1	0.7346
AT1G78950		ATLUP3	Terpenoid cyclases family prot...		Lus10016438 [exp]	9.5	0.7230
AT5G48500			unknown protein		Lus10020403 [exp]	11.7	0.7265
AT2G42990			GDSL-like Lipase/Acylhydrolase...		Lus10029958 [exp]	25.8	0.7251
AT2G01060	GARP		myb-like HTH transcriptional r...		Lus10004809 [exp]	27.5	0.6341
AT4G23840			Leucine-rich repeat (LRR) fami...		Lus10003886 [exp]	31.4	0.6712
AT5G04930		ALA1	aminophospholipid ATPase 1 (.1...		Lus10008947 [exp]	32.3	0.7073
AT1G32930			Galactosyltransferase family p...		Lus10033248 [exp]	33.5	0.7031
AT1G70170		MMP	matrix metalloproteinase (.1)		Lus10041293 [exp]	41.8	0.7196

Compare expression of checked genes

Lus10012554 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.