Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19790 94 / 9e-22 AP2_ERF RAP2.11 related to AP2 11 (.1) AT4G11140 66 / 5e-12 AP2_ERF CRF1 cytokinin response factor 1 (.1) AT1G53170 64 / 9e-12 AP2_ERF ATERF8, ATERF-8 ETHYLENE RESPONSE ELEMENT BINDING FACTOR 4, ethylene response factor 8 (.1) AT4G23750 64 / 4e-11 AP2_ERF TMO3, CRF2 TARGET OF MONOPTEROS 3, cytokinin response factor 2 (.1.2) AT5G50080 62 / 5e-11 AP2_ERF ERF110 ethylene response factor 110 (.1) AT5G13910 62 / 5e-11 AP2_ERF LEAFY PETIOLE (LEP) LEAFY PETIOLE, Integrase-type DNA-binding superfamily protein (.1) AT5G53290 64 / 6e-11 AP2_ERF CRF3 cytokinin response factor 3 (.1) AT5G18560 63 / 9e-11 AP2_ERF PUCHI Integrase-type DNA-binding superfamily protein (.1) AT2G33710 62 / 9e-11 AP2_ERF Integrase-type DNA-binding superfamily protein (.1.2) AT3G20310 62 / 1e-10 AP2_ERF ATERF7, ATERF-7 ethylene response factor 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001297 [exp] 285 / 4e-95 ND / Lus10001298 [exp] 151 / 9e-45 AT5G19790 118 / 1e-33 related to AP2 11 (.1) Lus10036793 [exp] 124 / 4e-31 AT5G19790 115 / 4e-29 related to AP2 11 (.1) Lus10037137 [exp] 123 / 7e-31 AT5G19790 116 / 2e-29 related to AP2 11 (.1) Lus10030430 [exp] 107 / 7e-26 AT5G19790 115 / 1e-29 related to AP2 11 (.1) Lus10039171 [exp] 93 / 8e-21 AT5G19790 133 / 3e-37 related to AP2 11 (.1) Lus10013764 [exp] 92 / 9e-21 AT5G19790 132 / 6e-37 related to AP2 11 (.1) Lus10013614 [exp] 91 / 4e-20 AT5G19790 148 / 6e-43 related to AP2 11 (.1) Lus10010652 [exp] 90 / 6e-20 AT5G19790 155 / 6e-46 related to AP2 11 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G087800 [exp] 128 / 5e-33 AT5G19790 89 / 3e-20 related to AP2 11 (.1) Potri.008G091300 [exp] 116 / 5e-29 AT5G19790 80 / 5e-17 related to AP2 11 (.1) Potri.003G220200 [exp] 94 / 2e-21 AT5G19790 164 / 1e-49 related to AP2 11 (.1) Potri.013G056700 [exp] 91 / 1e-20 AT5G19790 105 / 4e-27 related to AP2 11 (.1) Potri.001G004700 [exp] 91 / 2e-20 AT5G19790 112 / 1e-29 related to AP2 11 (.1) Potri.019G036100 [exp] 87 / 3e-19 AT5G19790 98 / 3e-24 related to AP2 11 (.1) Potri.001G453100 [exp] 85 / 4e-18 AT5G19790 71 / 5e-14 related to AP2 11 (.1) Potri.002G153500 [exp] 81 / 4e-17 AT5G19790 79 / 6e-17 related to AP2 11 (.1) Potri.011G148900 [exp] 80 / 2e-16 AT5G19790 65 / 5e-12 related to AP2 11 (.1) Potri.014G076702 [exp] 79 / 3e-16 AT5G19790 74 / 5e-15 related to AP2 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF00847 [flax] [poplar] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Lus10012703 pacid=23148230 polypeptide=Lus10012703 locus=Lus10012703.g ID=Lus10012703.BGIv1.0 annot-version=v1.0 ATGGGCAGGAAGAGAAAAGTTGTGGCAGAAGCTGCAACTGATCAAACATCGTCCGGCAGCGAGAATGATCTGCAGGTCAATGACATCGACAGGAGAATGT CGACAAGGAAGAAGAGATTCGTGGGGGTAAGGCAGAGGCCATCGGGGAGATGGGTGGCGGAGATCAAAGACACGGTCCAGAAAATCAGAGTCTGGTTAGG CACATTCGACACGGCGGAGGAAGCCGCTAGAGCTTACGATGAAGCCGCTTGCCTCCTCCGTGGCTCCAACACCAGGACCAACTTCTGGCCTTCTTCTAAT CCTTCTTCTTCCGGCCACCAATATGGCAGCCATCCCGCCGCTAGGACGTCGTCGTTTTGTTCGCCTCCTCCTGCGTTGCCCACCAAGATCACGAACCTCC TTCTCCAACGTCTCTGCCGGTCGAGAACCGCCGGTAACGACAGCCAGCAGCTCCAGCTGCCGGAGGAGATGCAATTACCAAGACAGGGACTTGAAGAAGG AGAACAAACAACAATGGCAGCACCAGCACCTCAAGCAACAGCCACTACCAACTTCACAGATTTCTTCACAGAGTCATTATTACTACCATCAAGCATTGAT CAAAAGGAAGAAGATTACAACTGTTTCGGAATCAGCGATCAGCAAGCTGGATCAGCAGAATTCAATTTAGCAACAACCTGTGATTTCAACAGCCAATTAT TCTCCGACTCCCAAGAAATCGGAGGGGTCGACGACAATGGCGGTCTAATAAACTTCGATTTCGTGGACGATCTTCGAATTACAACGCTTAATTCATCGGC AGAATACTACTCCCCGTTTCAGATGGCTGATCACCAGGAGATTGACCAGGAAGAGTACTACAGCTCCGAAATCAAGAGGATGAAATACGAAAGGAAGTTC TCCGCCTCTCTGTATGCGTTCCATGGGATTCCAGAGTGCTTGAAGCTTAAAGTTGACCAAGCTGCTGGAGATCAGTTGACCAAGCTTCAGAGTGCTTGCA GAAGAAGGAACCAGAGAGGGATGTTAATGGAGGAGGAAGAAGACAGAGAGAGATTTGCTACTACTTCTACTACTACTACTACGAAGACCGAAGAATCGGC ATCAATGGCGGTTGATCAAATGGTTTCATCTTCCTCTGCTGCAAATGAGTCTGAAGAATCGTCGATGCTATGGAGCTCCCTTGATCTTCCATCAATCTGC TTCGTCCAATGA
AA sequence Show only first row Show all	>Lus10012703 pacid=23148230 polypeptide=Lus10012703 locus=Lus10012703.g ID=Lus10012703.BGIv1.0 annot-version=v1.0 MGRKRKVVAEAATDQTSSGSENDLQVNDIDRRMSTRKKRFVGVRQRPSGRWVAEIKDTVQKIRVWLGTFDTAEEAARAYDEAACLLRGSNTRTNFWPSSN PSSSGHQYGSHPAARTSSFCSPPPALPTKITNLLLQRLCRSRTAGNDSQQLQLPEEMQLPRQGLEEGEQTTMAAPAPQATATTNFTDFFTESLLLPSSID QKEEDYNCFGISDQQAGSAEFNLATTCDFNSQLFSDSQEIGGVDDNGGLINFDFVDDLRITTLNSSAEYYSPFQMADHQEIDQEEYYSSEIKRMKYERKF SASLYAFHGIPECLKLKVDQAAGDQLTKLQSACRRRNQRGMLMEEEEDRERFATTSTTTTTKTEESASMAVDQMVSSSSAANESEESSMLWSSLDLPSIC FVQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19790	AP2_ERF	RAP2.11	related to AP2 11 (.1)		Lus10012703 [exp]	0	1
AT1G27040			Major facilitator superfamily ...		Lus10032876 [exp]	14.4	0.6837
AT2G19460			Protein of unknown function (D...		Lus10006019 [exp]	14.7	0.6891
AT1G19090		CRK1, RKF2	CYSTEINE-RICH RLK \(RECEPTOR-L...		Lus10020927 [exp]	28.4	0.6461
AT2G22475		GEM	GL2-EXPRESSION MODULATOR, GRAM...		Lus10025728 [exp]	29.8	0.6605
AT1G68570			Major facilitator superfamily ...		Lus10017817 [exp]	45.9	0.5567
AT3G46440		UXS5	UDP-XYL synthase 5 (.1.2)		Lus10005450 [exp]	50.0	0.6372
AT5G46230			Protein of unknown function, D...		Lus10013912 [exp]	54.7	0.5894
AT1G18880		NRT1.9	nitrate transporter 1.9, Major...		Lus10015351 [exp]	58.6	0.5865
AT3G51860		CAX1-LIKE, ATHC...	cation exchanger 3 (.1)		Lus10035507 [exp]	63.5	0.5720
AT4G30080	ARF	ARF16	auxin response factor 16 (.1)		Lus10019940 [exp]	68.6	0.5986

Compare expression of checked genes

Lus10012703 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.