Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10510 473 / 7e-162 AP2_ERF PLT3, AIL6 PLETHORA 3, AINTEGUMENTA-like 6 (.1.2.3) AT5G65510 416 / 4e-141 AP2_ERF PLT7, AIL7 PLETHORA 7, AINTEGUMENTA-like 7 (.1) AT3G20840 332 / 3e-107 AP2_ERF PLT1 PLETHORA 1, Integrase-type DNA-binding superfamily protein (.1) AT1G51190 325 / 1e-104 AP2_ERF PLT2 PLETHORA 2, Integrase-type DNA-binding superfamily protein (.1) AT5G57390 322 / 1e-103 AP2_ERF PLT5, EMK, CHO1, AIL5 PLETHORA 5, EMBRYOMAKER, CHOTTO 1, AINTEGUMENTA-like 5 (.1) AT5G17430 320 / 2e-102 AP2_ERF BBM BABY BOOM, Integrase-type DNA-binding superfamily protein (.1) AT1G72570 287 / 9e-92 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT4G37750 284 / 6e-89 AP2_ERF DRG, CKC1, ANT DRAGON, COMPLEMENTING A PROTEIN KINASE C MUTANT 1, AINTEGUMENTA, Integrase-type DNA-binding superfamily protein (.1) AT3G54320 216 / 2e-64 AP2_ERF ATWRI1, ASML1, WRI1 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3) AT1G16060 195 / 2e-57 AP2_ERF ADAP ARIA-interacting double AP2 domain protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002657 [exp] 812 / 0 AT5G10510 467 / 5e-160 PLETHORA 3, AINTEGUMENTA-like 6 (.1.2.3) Lus10031831 [exp] 331 / 5e-108 AT3G20840 580 / 0.0 PLETHORA 1, Integrase-type DNA-binding superfamily protein (.1) Lus10031260 [exp] 329 / 7e-106 AT1G51190 667 / 0.0 PLETHORA 2, Integrase-type DNA-binding superfamily protein (.1) Lus10007719 [exp] 305 / 1e-96 AT4G37750 429 / 1e-144 DRAGON, COMPLEMENTING A PROTEIN KINASE C MUTANT 1, AINTEGUMENTA, Integrase-type DNA-binding superfamily protein (.1) Lus10037670 [exp] 298 / 1e-96 AT1G72570 355 / 1e-120 Integrase-type DNA-binding superfamily protein (.1) Lus10018655 [exp] 305 / 2e-96 AT4G37750 430 / 9e-145 DRAGON, COMPLEMENTING A PROTEIN KINASE C MUTANT 1, AINTEGUMENTA, Integrase-type DNA-binding superfamily protein (.1) Lus10001553 [exp] 221 / 9e-67 AT1G16060 331 / 3e-112 ARIA-interacting double AP2 domain protein (.1.2) Lus10008939 [exp] 222 / 5e-66 AT3G54320 303 / 2e-98 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3) Lus10028880 [exp] 221 / 9e-66 AT3G54320 298 / 1e-96 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G011600 [exp] 538 / 0 AT5G10510 510 / 5e-177 PLETHORA 3, AINTEGUMENTA-like 6 (.1.2.3) Potri.001G018400 [exp] 330 / 7e-107 AT1G51190 639 / 0.0 PLETHORA 2, Integrase-type DNA-binding superfamily protein (.1) Potri.003G205700 [exp] 328 / 5e-106 AT1G51190 635 / 0.0 PLETHORA 2, Integrase-type DNA-binding superfamily protein (.1) Potri.008G076400 [exp] 333 / 8e-106 AT5G17430 405 / 4e-133 BABY BOOM, Integrase-type DNA-binding superfamily protein (.1) Potri.018G091600 [exp] 328 / 1e-105 AT5G57390 422 / 9e-142 PLETHORA 5, EMBRYOMAKER, CHOTTO 1, AINTEGUMENTA-like 5 (.1) Potri.006G167700 [exp] 325 / 4e-105 AT5G57390 432 / 2e-146 PLETHORA 5, EMBRYOMAKER, CHOTTO 1, AINTEGUMENTA-like 5 (.1) Potri.010G181000 [exp] 322 / 1e-101 AT5G17430 399 / 2e-130 BABY BOOM, Integrase-type DNA-binding superfamily protein (.1) Potri.002G114800 [exp] 295 / 3e-92 AT4G37750 459 / 5e-155 DRAGON, COMPLEMENTING A PROTEIN KINASE C MUTANT 1, AINTEGUMENTA, Integrase-type DNA-binding superfamily protein (.1) Potri.001G169500 [exp] 292 / 3e-92 AT1G72570 389 / 2e-131 Integrase-type DNA-binding superfamily protein (.1) Potri.014G012200 [exp] 295 / 9e-92 AT4G37750 405 / 8e-134 DRAGON, COMPLEMENTING A PROTEIN KINASE C MUTANT 1, AINTEGUMENTA, Integrase-type DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF00847 [flax] [poplar] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Lus10012728 pacid=23148171 polypeptide=Lus10012728 locus=Lus10012728.g ID=Lus10012728.BGIv1.0 annot-version=v1.0 ATGGCACCGGTTCCAGCTGCAGTAGGTAGTAACTGGCTTTCCTTCTCGCTTTTTTCTTTCGCGCTTCCCCCAATGGAGATGCTCAGACCATACGATGAAG CAGCAGCAGCAGCGGCTGCGGCGGCTGCTGCTTCCGGCGATGATTCCACCTCGCATCATCACTACTTCCTTGATAACTTCTACTCTCACGGATGGGGAAA TCCGAAGGACGGTGAGGCGGTGGCGGAGACTGCGCTGCTGACGAGCTTCATGGACCAGCAGCAATCTGGAGGAGGACGGACTCCTCCTCCGCAGCCGAAG CTGGAGGACTTTCTCGGAGATTCAGCGGCGATGGTGAGGTACGCGGAGAATAGCCAAACAGGCGGAGGAGATGCGCAGGACTCTTCCTCCCTGACGCAAA TCTACGACAACGGTGGTGCTTCTGCCTACTTCAACGATCATCAGCAAGATCTGAAGGCGATTGCGGCTTTTCAAGGAGGATTCTCCACCAACTCCGGGGC ATCCGAGGTGGATGACCCCGGCCGCAGCAGCACCGAGTTCATGGCGGCGGTGACTCAGTCGGTTGGGAACGAGTTAGCTTACTCGCGAAACGCCTTGTCG CTTGCCGTCAATACAGCTGCTGCTCCTTCCGCTCACAATAATAACAACGATAGCTCTTCCAATTCGTCGGAGAAGGCTATGGCGGTGGTCAGCGTTGTTG ACTCCGATTGCAATAAGAAGCTCGCCGATACCTTCGGCCAACGAACCTCCATTTACAGAGGCGTCACTAGGCATAGATGGACAGGTAGATACGAAGCGCA TCTATGGGATAACAGCTGTAGGAGAGAGGGTCAAGCCAGAAAAGGACGTCAAGGTGGATATGATAAAGAAGATAAAGCAGCTAGAGCTTATGATTTAGCA GCGCTCAAATACTGGGGCCCCACTGCCACCACCAATTTCCCTGTGTCTAATTATAACAAAGAACTCGAGGAGATGAAGTACGCATCGAAACAGGAGTTCA TCGCTTCTTTGAGGAGGAAAAGTAGTGGGTTCTCAAGGGGTGCATCAATTTACAGGGGTGTTACGAGGCATCATCAGCAAGGTCGTTGGCAAGCGAGGAT CGGCCGAGTTGCTGGGAACAAAGACTTGTACCTCGGCACATTCGCTACTGAAGAGGAAGCAGCAGAGGCATATGACATAGCGGCCATAAAGTTCAGGGGC ATGAACGCCGTCACCAACTTCGAGATGAATCGGTACGATGTCGAGGCGATAATGAAGAGCGCTTTGCCCATCGGTGGAGCTGCAAAGCGCCTGAAAATCT CGCTCGAGACAGAACAGAAGCCAACTTTGACCCACCACGATCCTCAACAACATCATCATGATGAAAATAACATCAGCTTTGGTTCCGTGCAGCAGCAGCA ACAACAGATTCCATCCATCCCTTGCGGCATCCCTTATGACGCAGCGTATTACCACCATAGCCTCTTCCACCACCTCCCCCCTGCAGCAGGTAATAACCAA GGACAAGGAGGTTCGGGCATTGCAGTTCCAACCTCGAACATGCTGACTCCTCCGATGATGCCGCGAACAACCGACTTCTTCCTGTGGCCTCATCACCAGT CGTACTGA
AA sequence Show only first row Show all	>Lus10012728 pacid=23148171 polypeptide=Lus10012728 locus=Lus10012728.g ID=Lus10012728.BGIv1.0 annot-version=v1.0 MAPVPAAVGSNWLSFSLFSFALPPMEMLRPYDEAAAAAAAAAAASGDDSTSHHHYFLDNFYSHGWGNPKDGEAVAETALLTSFMDQQQSGGGRTPPPQPK LEDFLGDSAAMVRYAENSQTGGGDAQDSSSLTQIYDNGGASAYFNDHQQDLKAIAAFQGGFSTNSGASEVDDPGRSSTEFMAAVTQSVGNELAYSRNALS LAVNTAAAPSAHNNNNDSSSNSSEKAMAVVSVVDSDCNKKLADTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQARKGRQGGYDKEDKAARAYDLA ALKYWGPTATTNFPVSNYNKELEEMKYASKQEFIASLRRKSSGFSRGASIYRGVTRHHQQGRWQARIGRVAGNKDLYLGTFATEEEAAEAYDIAAIKFRG MNAVTNFEMNRYDVEAIMKSALPIGGAAKRLKISLETEQKPTLTHHDPQQHHHDENNISFGSVQQQQQQIPSIPCGIPYDAAYYHHSLFHHLPPAAGNNQ GQGGSGIAVPTSNMLTPPMMPRTTDFFLWPHHQSY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G10510	AP2_ERF	PLT3, AIL6	PLETHORA 3, AINTEGUMENTA-like ...		Lus10012728 [exp]	0	1
AT5G03415	E2F_DP	ATDPB, DPB	Transcription factor DP (.1.2)		Lus10014423 [exp]	1.0	0.9507
AT5G12330		LRP1	LATERAL ROOT PRIMORDIUM 1, Lat...		Lus10036032 [exp]	1.4	0.9304
AT1G44910		ATPRP40A	pre-mRNA-processing protein 40...		Lus10007723 [exp]	1.7	0.8946
AT3G21420		LBO1	LATERAL BRANCHING OXIDOREDUCTA...		Lus10006518 [exp]	3.2	0.8917
AT3G12170			Chaperone DnaJ-domain superfam...		Lus10013402 [exp]	3.5	0.8912
AT1G24430			HXXXD-type acyl-transferase fa...		Lus10037956 [exp]	7.3	0.8605
AT5G18260			RING/U-box superfamily protein...		Lus10020256 [exp]	7.3	0.8662
AT2G02470	Alfin	AL6	alfin-like 6 (.1.2)		Lus10026268 [exp]	7.4	0.8730
AT5G14140	C2H2ZnF		zinc ion binding;nucleic acid ...		Lus10032036 [exp]	8.7	0.8549
AT1G02330			unknown protein		Lus10026267 [exp]	8.9	0.8536

Compare expression of checked genes

Lus10012728 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.