Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G28960 365 / 6e-124 Transmembrane amino acid transporter family protein (.1) AT5G15240 359 / 2e-121 Transmembrane amino acid transporter family protein (.1.2) AT2G41190 298 / 3e-96 Transmembrane amino acid transporter family protein (.1) AT2G39130 292 / 8e-94 Transmembrane amino acid transporter family protein (.1) AT5G02180 280 / 3e-89 Transmembrane amino acid transporter family protein (.1) AT5G02170 266 / 4e-84 Transmembrane amino acid transporter family protein (.1.2) AT3G54830 263 / 2e-82 Transmembrane amino acid transporter family protein (.1) AT3G09340 261 / 4e-82 Transmembrane amino acid transporter family protein (.1) AT3G09330 260 / 1e-81 Transmembrane amino acid transporter family protein (.1) AT5G16740 191 / 2e-56 Transmembrane amino acid transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030469 [exp] 660 / 0 AT5G15240 405 / 4e-139 Transmembrane amino acid transporter family protein (.1.2) Lus10005239 [exp] 360 / 6e-122 AT5G15240 509 / 4e-180 Transmembrane amino acid transporter family protein (.1.2) Lus10030683 [exp] 347 / 1e-116 AT5G15240 510 / 2e-180 Transmembrane amino acid transporter family protein (.1.2) Lus10023029 [exp] 316 / 1e-105 AT3G28960 280 / 6e-92 Transmembrane amino acid transporter family protein (.1) Lus10039190 [exp] 258 / 2e-80 AT2G39130 652 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10003817 [exp] 258 / 8e-80 AT2G41190 615 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10010457 [exp] 256 / 2e-75 AT5G04140 2772 / 0.0 FERREDOXIN-DEPENDENT GLUTAMATE SYNTHASE 1, FERREDOXIN-DEPENDENT GLUTAMATE SYNTHASE, glutamate synthase 1 (.1.2) Lus10010855 [exp] 239 / 4e-72 AT5G02170 501 / 2e-171 Transmembrane amino acid transporter family protein (.1.2) Lus10024374 [exp] 194 / 2e-56 AT5G02180 446 / 4e-152 Transmembrane amino acid transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G169000 [exp] 515 / 0 AT3G28960 381 / 2e-130 Transmembrane amino acid transporter family protein (.1) Potri.008G086500 [exp] 514 / 0 AT3G28960 411 / 4e-142 Transmembrane amino acid transporter family protein (.1) Potri.017G083700 [exp] 377 / 1e-128 AT3G28960 456 / 2e-159 Transmembrane amino acid transporter family protein (.1) Potri.017G083500 [exp] 372 / 2e-126 AT5G15240 448 / 4e-156 Transmembrane amino acid transporter family protein (.1.2) Potri.018G099700 [exp] 327 / 2e-109 AT3G28960 348 / 6e-118 Transmembrane amino acid transporter family protein (.1) Potri.008G036300 [exp] 296 / 2e-95 AT2G39130 691 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.010G226000 [exp] 294 / 1e-94 AT2G39130 708 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.016G100300 [exp] 265 / 3e-83 AT5G02180 587 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.006G038700 [exp] 247 / 1e-77 AT2G41190 459 / 9e-159 Transmembrane amino acid transporter family protein (.1) Potri.002G233200 [exp] 202 / 4e-60 AT5G16740 416 / 5e-143 Transmembrane amino acid transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF01490 [flax] [poplar] Aa_trans Transmembrane amino acid transporter protein
Representative CDS sequence Show only first row Show all	>Lus10012824 pacid=23163044 polypeptide=Lus10012824 locus=Lus10012824.g ID=Lus10012824.BGIv1.0 annot-version=v1.0 ATGGAGTGCCAAAAGGGAGCAACAATGGAGGTAGAGAGCCAAACCCATGATGAGGATCATGATAAACCCAAAGGCACAAGCTTCCTTAGGACTTGCTTCA ATGGGCTCAACGCGCTTTCAGGGGTTGGGATTTTGTCGATCCCGTTTGCGCTTTCCCAAGGAGGGTGGCTCAGCCTGGCTATACTCCTCCTAGTGGCTTC TCTATGCTTCTACACGGCTTTGCTCTTGAGGCGTTGCATGGATACAGATGCACTCATCAAGACGTATCCTGACATTGGCTATCGAGCCTTCGGGTCTAAA GGACGGGCTCTTGTATCTATCTTCTTGTATCTAGAACTCTATCTTGTCGCGGTGGAGTTCTTGATACTCGAAGGGGACAACTTGGACAAGTTGTTTCCCC ACACAAGGTTTAAGCTTTTTGGTGGCATTGAACTTGGTGGCAAAGAGGCATTTGTTTGCCTTTCTGGTCTTGTGATTCTCCCAACAACTTGGCTAAGAAG CCTAGGAGTTATGGCTTATGTTTCAGTTGGTGGAGTTGTGGCTTCAATTGTTTTGGTTGTTTGTGTCTTTTGGGTTGGAGCAGTTGATGATGTTGGGTTC CATGAAAATGGACAAATCCTTAGATGGGAAGGATTGCCAACTGCCATAAGTTTGTTCACTTTTTGTTACTGTGGTCATGCTGTTTTCCCAACTTTGTGCA ACTCGATGAAGGACAAGACCCAATTCTCCAAGGTTTTGCTCGTTTGTTTCGTGGTGACCACATTCACATACGGCTCGATGGCGGTTATGGGATACCTCAT GTTTGGAGACCGGCTAAACTCACAAGTGACGTTAAACCTCCCTATCTCGAATCTCAGTTCCAAGGTCGCGATCTACACCACGTTGGTGAACCCCGTGACC AAGTACGCAGTCATCATCGCTCCGATCACGAGTGCGGTGGAGGATAAGTTTAGGTTCCAGGACAATCGGCTTCTCAGCATCCTTGCCAGGACGGGGATCG TGGTTAGCACGGTGATCGTGGCCATAACCGTGCCCTTCTTCGGCTACGTGATGGCATTCATCGGGTCGTCGTTGAGCGTGCTCGCCTCGCTCATTTTGCC TTGTTTGTGCTATATTAGGATCACCAGATCGGCCAGGAGATTCGGGTTCGAGGTCGTGTTTATTGCGGGGATTTTGATCTTTGGGGTTGTTGTTGGGATA GCGGGTACTTACACTTCCGTTAGACAAATAGTGAAACATATGTAA
AA sequence Show only first row Show all	>Lus10012824 pacid=23163044 polypeptide=Lus10012824 locus=Lus10012824.g ID=Lus10012824.BGIv1.0 annot-version=v1.0 MECQKGATMEVESQTHDEDHDKPKGTSFLRTCFNGLNALSGVGILSIPFALSQGGWLSLAILLLVASLCFYTALLLRRCMDTDALIKTYPDIGYRAFGSK GRALVSIFLYLELYLVAVEFLILEGDNLDKLFPHTRFKLFGGIELGGKEAFVCLSGLVILPTTWLRSLGVMAYVSVGGVVASIVLVVCVFWVGAVDDVGF HENGQILRWEGLPTAISLFTFCYCGHAVFPTLCNSMKDKTQFSKVLLVCFVVTTFTYGSMAVMGYLMFGDRLNSQVTLNLPISNLSSKVAIYTTLVNPVT KYAVIIAPITSAVEDKFRFQDNRLLSILARTGIVVSTVIVAITVPFFGYVMAFIGSSLSVLASLILPCLCYIRITRSARRFGFEVVFIAGILIFGVVVGI AGTYTSVRQIVKHM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G15240			Transmembrane amino acid trans...		Lus10012824 [exp]	0	1
AT5G15240			Transmembrane amino acid trans...		Lus10030469 [exp]	1.0	0.9250
AT5G53890		AtPSKR2	phytosylfokine-alpha receptor ...		Lus10005403 [exp]	4.2	0.7799
AT1G43650			nodulin MtN21 /EamA-like trans...		Lus10028585 [exp]	5.5	0.8507
AT5G57685		LSB1, ATGDU3	LESS SUSCEPTIBLE TO BSCTV 1, A...		Lus10019985 [exp]	6.3	0.7768
AT5G59990			CCT motif family protein (.1.2...		Lus10042841 [exp]	6.7	0.8140
AT5G14940			Major facilitator superfamily ...		Lus10014510 [exp]	7.5	0.7868
AT2G27500			Glycosyl hydrolase superfamily...		Lus10020618 [exp]	8.7	0.7597
AT2G23340	AP2_ERF	DEAR3	DREB and EAR motif protein 3 (...		Lus10010043 [exp]	9.7	0.7924
AT5G57685		LSB1, ATGDU3	LESS SUSCEPTIBLE TO BSCTV 1, A...		Lus10019986 [exp]	10.6	0.7837
AT5G58430		ATEXO70B1	exocyst subunit exo70 family p...		Lus10011859 [exp]	14.2	0.7163

Compare expression of checked genes

Lus10012824 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.