Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G02820 394 / 3e-133 MYB ATMYB88 myb domain protein 88 (.1.2) AT1G14350 359 / 2e-120 MYB FLP, AtMYB124 FOUR LIPS, myb domain protein 124, Duplicated homeodomain-like superfamily protein (.1.2) AT3G27785 101 / 3e-23 MYB PGA37, ATMYB118 PLANT GROWTH ACTIVATOR 37, myb domain protein 118 (.1) AT5G58850 100 / 7e-23 MYB ATMYB119 myb domain protein 119 (.1) AT3G09370 101 / 8e-23 MYB ATMYB3R-3, ATMYB3R3 myb domain protein 3R3, myb domain protein 3r-3 (.1.2) AT2G25230 96 / 2e-22 MYB ATMYB100 myb domain protein 100 (.1) AT5G02320 99 / 8e-22 MYB MYB3R-5, ATMYB3R5 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3R5, myb domain protein 3r-5 (.1.2) AT5G40360 96 / 2e-21 MYB ATMYB115 myb domain protein 115 (.1) AT5G11050 96 / 2e-21 MYB ATMYB64 myb domain protein 64 (.1) AT5G11510 95 / 1e-20 MYB ATMYB3R-4, AtMYB3R4 myb domain protein 3R4, myb domain protein 3r-4 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030494 [exp] 673 / 0 AT2G02820 457 / 4e-158 myb domain protein 88 (.1.2) Lus10036728 [exp] 127 / 3e-33 AT2G02820 166 / 2e-48 myb domain protein 88 (.1.2) Lus10037202 [exp] 123 / 7e-32 AT2G02820 168 / 1e-48 myb domain protein 88 (.1.2) Lus10025351 [exp] 100 / 1e-22 AT3G09370 456 / 8e-157 myb domain protein 3R3, myb domain protein 3r-3 (.1.2) Lus10024394 [exp] 100 / 1e-22 AT3G09370 456 / 8e-157 myb domain protein 3R3, myb domain protein 3r-3 (.1.2) Lus10008010 [exp] 98 / 7e-22 AT5G02320 237 / 3e-72 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3R5, myb domain protein 3r-5 (.1.2) Lus10013084 [exp] 94 / 5e-21 AT3G27785 183 / 6e-54 PLANT GROWTH ACTIVATOR 37, myb domain protein 118 (.1) Lus10022256 [exp] 95 / 7e-21 AT3G27785 175 / 2e-50 PLANT GROWTH ACTIVATOR 37, myb domain protein 118 (.1) Lus10011687 [exp] 97 / 8e-21 AT4G32730 502 / 3e-158 C-MYB-LIKE TRANSCRIPTION FACTOR 3R-1, ARABIDOOSIS THALIANA MYB DOMAIN PROTEIN 3R1, Homeodomain-like protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G148400 [exp] 457 / 5e-158 AT2G02820 518 / 0.0 myb domain protein 88 (.1.2) Potri.010G093000 [exp] 454 / 4e-157 AT2G02820 470 / 4e-163 myb domain protein 88 (.1.2) Potri.006G085600 [exp] 107 / 1e-24 AT5G02320 477 / 9e-164 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3R5, myb domain protein 3r-5 (.1.2) Potri.012G082000 [exp] 98 / 9e-22 AT4G18770 268 / 2e-85 myb domain protein 98 (.1) Potri.014G079300 [exp] 97 / 2e-21 AT4G32730 266 / 5e-80 C-MYB-LIKE TRANSCRIPTION FACTOR 3R-1, ARABIDOOSIS THALIANA MYB DOMAIN PROTEIN 3R1, Homeodomain-like protein (.1.2) Potri.006G241700 [exp] 98 / 3e-21 AT5G11510 696 / 0.0 myb domain protein 3R4, myb domain protein 3r-4 (.1.2) Potri.003G123800 [exp] 96 / 4e-21 AT3G09370 231 / 3e-70 myb domain protein 3R3, myb domain protein 3r-3 (.1.2) Potri.018G038000 [exp] 96 / 1e-20 AT4G32730 748 / 0.0 C-MYB-LIKE TRANSCRIPTION FACTOR 3R-1, ARABIDOOSIS THALIANA MYB DOMAIN PROTEIN 3R1, Homeodomain-like protein (.1.2) Potri.014G035100 [exp] 91 / 1e-20 AT4G37260 183 / 1e-56 myb domain protein 73 (.1) Potri.001G347200 [exp] 94 / 2e-20 AT3G27785 223 / 8e-68 PLANT GROWTH ACTIVATOR 37, myb domain protein 118 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10012847 pacid=23162977 polypeptide=Lus10012847 locus=Lus10012847.g ID=Lus10012847.BGIv1.0 annot-version=v1.0 ATGGAAGAAGATAAGAAGAAGCAGATGATGATCAATGGTGGTGGTGGTGGCAGTGGGAGTGAAGAATCTACTAAGAAGAAGGAGAGGCATATTGTCTCAT GGAGTTCTGAGGAAGATGATATACTTCGTCAGCAGATAAGCTTACATGGAACTGAGAACTGGGCGATCATAGCATCAAAGTTCAATGATAAAACAACAAG ACAGTGTAGACGGAGATGGTTTACATACTTGAATTCCGATTTCAAGAAAGGCGGTTGGTCACCGGAGGAAGACTTGCTCTTGTGCGAGGCTCAAAGGATA TTTGGTAACAGATGGACAGAGATCGCAAAGGTTGTTTCAGGCAGAACGGATAATGCAGTTAAGAACCGGTTCACAACTCTGTGCAAGAAGAGAGCAAAGT ACGAAGCTTTAGCGAAAGAGAACGAAAAAGGTGGATGCATCAATGCAAACAACAAAAGGGTATTGTTGGATCGCAAGGTGAACGCTGCCGGAAATACAGA AAATGCAACAGCTGCTAAGAGAACAAGGAGATCTCACATCCCGAGTCGAATGGAGAATCAAAACTTTGGAGACAGATCTCACCCCAAGTCTAGAACTCAA CAGCTTAGACCTCCATTCATGGTGCTGCCTCCGGAAGTGCATAAAGTTAACGGTGGAAGCCAGCCGCCGGTTGACAATGAAAACGACATCTCTTCTGATG GAGCTCAAAGTAAGACTCAAGGAACTTTCCTGAAAAAAGATGATCCAAAGTTATCAGCTTTGGTGCAACAAGCAGAACTTCTGAGCACACTGGCATTGAA AGTCAATTCGGAGAGTACAGACCAGAGTCTTGAACATGCTTGGAAGGTTCTCCAGAATTTCTTGAAAAGCGGCAAAGGAGATGAGGTCACAAGTTATGCA CTTCCTGACACTGATTTCCAGCTCGAGGATTTCAAAGACTTGATGGAAGATTTAAGCAGCAGTGATGGAAGCCATTCGTCTTGGAGGCAACCTGATTTAT ATGAAGCATCTCCAGCAAGCTCTGAATTCAGTTCCGGCTCCAGTCTCATATCATACTCAGCACCTGATGCAACAGAACAACCTCAAGGTGAAATTGATAT GCTGCAGAATGATATCGAAACTGATTTGCAAATAGTGCCCATCGAAGGACAAAACGGCATAGGTGAATGTGACAACAAGATTGTGTCCGACGACAACATA GCCGAAGGGAACCTGTTTCCATCCTTCAGTAGGGAACTTAAAGCAGTTGGCTTTGCTTTTCTAAGTTCTATTATTTTGTCATTTATAGTGAACAAATCAA CTTCCATATTAGGGGAACGTAGATTCCTACTAAAAACTCTTGGAGTGGAGTCACCTTTTCCTAATCCAACTACGAACACCTCCCAACAACCACCCTGCAA GAGAGTCCTTCTCCAAAGTCTATGA
AA sequence Show only first row Show all	>Lus10012847 pacid=23162977 polypeptide=Lus10012847 locus=Lus10012847.g ID=Lus10012847.BGIv1.0 annot-version=v1.0 MEEDKKKQMMINGGGGGSGSEESTKKKERHIVSWSSEEDDILRQQISLHGTENWAIIASKFNDKTTRQCRRRWFTYLNSDFKKGGWSPEEDLLLCEAQRI FGNRWTEIAKVVSGRTDNAVKNRFTTLCKKRAKYEALAKENEKGGCINANNKRVLLDRKVNAAGNTENATAAKRTRRSHIPSRMENQNFGDRSHPKSRTQ QLRPPFMVLPPEVHKVNGGSQPPVDNENDISSDGAQSKTQGTFLKKDDPKLSALVQQAELLSTLALKVNSESTDQSLEHAWKVLQNFLKSGKGDEVTSYA LPDTDFQLEDFKDLMEDLSSSDGSHSSWRQPDLYEASPASSEFSSGSSLISYSAPDATEQPQGEIDMLQNDIETDLQIVPIEGQNGIGECDNKIVSDDNI AEGNLFPSFSRELKAVGFAFLSSIILSFIVNKSTSILGERRFLLKTLGVESPFPNPTTNTSQQPPCKRVLLQSL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G02820	MYB	ATMYB88	myb domain protein 88 (.1.2)		Lus10012847 [exp]	0	1
AT2G02820	MYB	ATMYB88	myb domain protein 88 (.1.2)		Lus10030494 [exp]	3.7	0.8096
AT5G16720			Protein of unknown function, D...		Lus10004050 [exp]	7.1	0.8399
AT4G18020	GARP	APRR2	PSEUDO-RESPONSE REGULATOR 2, C...		Lus10011044 [exp]	8.8	0.7923
AT5G62620			Galactosyltransferase family p...		Lus10037238 [exp]	13.0	0.8313
AT1G61850			phospholipases;galactolipases ...		Lus10018349 [exp]	15.2	0.8369
AT5G14430			S-adenosyl-L-methionine-depend...		Lus10022291 [exp]	16.1	0.7980
AT5G54200			Transducin/WD40 repeat-like su...		Lus10027671 [exp]	20.1	0.8264
AT1G04120		ATABCC5, ABCC5,...	MULTIDRUG RESISTANCE PROTEIN 5...		Lus10022858 [exp]	20.3	0.8193
AT1G04120		ATABCC5, ABCC5,...	MULTIDRUG RESISTANCE PROTEIN 5...		Lus10024965 [exp]	21.1	0.8225
AT4G38200			SEC7-like guanine nucleotide e...		Lus10001620 [exp]	21.5	0.8343

Compare expression of checked genes

Lus10012847 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.