Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40540 539 / 0 ATKUP2, ATKT2, TRK2, SHY3, KT2 potassium transporter 2 (.1.2) AT5G14880 475 / 8e-158 Potassium transporter family protein (.1) AT1G70300 473 / 6e-157 KUP6 K+ uptake permease 6, K+ uptake permease 6 (.1) AT2G30070 387 / 2e-124 ATKUP1, ATKT1P, ATKT1 POTASSIUM UPTAKE TRANSPORTER 1, potassium transporter 1 (.1) AT4G23640 343 / 6e-107 ATKT3, KUP4, TRH1 TINY ROOT HAIR 1, Potassium transporter family protein (.1) AT3G02050 339 / 1e-105 ATKT4, ATKUP3, KUP3 K+ uptake transporter 3, ARABIDOPSIS THALIANA POTASSIUM TRANSPORTER 4, K+ uptake transporter 3 (.1) AT4G13420 327 / 8e-101 HAK5, ATHAK5 high affinity K+ transporter 5, ARABIDOPSIS THALIANA HIGH AFFINITY K+ TRANSPORTER 5, high affinity K+ transporter 5 (.1) AT1G60160 306 / 8e-93 Potassium transporter family protein (.1) AT2G35060 303 / 5e-92 KUP11 K+ uptake permease 11, K+ uptake permease 11 (.1), K+ uptake permease 11 (.2) AT1G31120 297 / 2e-89 KUP10 K+ uptake permease 10, K+ uptake permease 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029050 [exp] 1209 / 0 AT2G40540 563 / 0.0 potassium transporter 2 (.1.2) Lus10014531 [exp] 778 / 0 AT5G14880 1098 / 0.0 Potassium transporter family protein (.1) Lus10032154 [exp] 739 / 0 AT2G30070 562 / 0.0 POTASSIUM UPTAKE TRANSPORTER 1, potassium transporter 1 (.1) Lus10030539 [exp] 720 / 0 AT2G40540 1245 / 0.0 potassium transporter 2 (.1.2) Lus10034215 [exp] 634 / 0 AT2G40540 1239 / 0.0 potassium transporter 2 (.1.2) Lus10024709 [exp] 590 / 0 AT3G02050 636 / 0.0 K+ uptake transporter 3, ARABIDOPSIS THALIANA POTASSIUM TRANSPORTER 4, K+ uptake transporter 3 (.1) Lus10032327 [exp] 587 / 0 AT2G30070 635 / 0.0 POTASSIUM UPTAKE TRANSPORTER 1, potassium transporter 1 (.1) Lus10029172 [exp] 516 / 2e-173 AT2G30070 590 / 0.0 POTASSIUM UPTAKE TRANSPORTER 1, potassium transporter 1 (.1) Lus10030632 [exp] 492 / 4e-164 AT1G70300 1238 / 0.0 K+ uptake permease 6, K+ uptake permease 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G083400 [exp] 561 / 0 AT2G40540 1225 / 0.0 potassium transporter 2 (.1.2) Potri.019G056500 [exp] 560 / 0 AT2G40540 1272 / 0.0 potassium transporter 2 (.1.2) Potri.010G094300 [exp] 480 / 1e-159 AT1G70300 1228 / 0.0 K+ uptake permease 6, K+ uptake permease 6 (.1) Potri.008G147400 [exp] 476 / 3e-158 AT1G70300 1221 / 0.0 K+ uptake permease 6, K+ uptake permease 6 (.1) Potri.009G073500 [exp] 398 / 4e-128 AT2G30070 1092 / 0.0 POTASSIUM UPTAKE TRANSPORTER 1, potassium transporter 1 (.1) Potri.014G144900 [exp] 378 / 4e-120 AT3G02050 1175 / 0.0 K+ uptake transporter 3, ARABIDOPSIS THALIANA POTASSIUM TRANSPORTER 4, K+ uptake transporter 3 (.1) Potri.002G237500 [exp] 363 / 5e-114 AT3G02050 1179 / 0.0 K+ uptake transporter 3, ARABIDOPSIS THALIANA POTASSIUM TRANSPORTER 4, K+ uptake transporter 3 (.1) Potri.003G148200 [exp] 354 / 1e-111 AT2G30070 831 / 0.0 POTASSIUM UPTAKE TRANSPORTER 1, potassium transporter 1 (.1) Potri.005G095900 [exp] 346 / 1e-108 AT2G30070 769 / 0.0 POTASSIUM UPTAKE TRANSPORTER 1, potassium transporter 1 (.1) Potri.003G133900 [exp] 344 / 2e-107 AT4G23640 947 / 0.0 TINY ROOT HAIR 1, Potassium transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF02705 [flax] [poplar] K_trans K+ potassium transporter
Representative CDS sequence Show only first row Show all	>Lus10012888 pacid=23163002 polypeptide=Lus10012888 locus=Lus10012888.g ID=Lus10012888.BGIv1.0 annot-version=v1.0 ATGTCCCAGCTCGGAGTAGGAGCAGTCGATTCAGGGGTTTCCAAGATGTCCCAGGGTCCAAAGAAGGAGTCTTGGAAGACACTGTTGATTCTGGCTTATC AGAGCCTTGGTGTAGTCTATGGGGACCTTAGCATATCTCCCTTGTATGTTTTCAAGAGCACATTTGCGGACGATATCCAGCATTCTCAAAGCAACGATGA GATTTACGGGGTTCTGTCGTTCGTGTTTTGGACACTCACTTTGGTCCCCTTGTTCAAGTATGTGTTCATTGTTCTCAGAGCTGATGACAATGGAGAGGGT GGTACTTTCGCGCTGTATTCTCTACTCTGCCGGCATGCCAAAGTTAGCCTTCTTCCGAACCGGCAGGTCTCAGATGAATCACTGTCCACTTATATCCTCG AACATCCCCCGGAAAAGAAGAATTTCTGCCCCAAAACATTCCTTGAGAAGCATAAGGGCTTACACACTGCTTTGTTGATCTTGGTTCTTCTTGGCACTTG TATGGTTATCGGGGACGGACTCCTCACTCCGGCCATTTCGGTTTTCACTGCGGTATCTGGACTCGAGTTGTCAATGGAGAAACATCAATATGCAGTTATT CCAATCACTTGCTTCACCTTGGTGTGCCTCTTTTCACTCCAACATTACGGCACTCATCGTGTGGGGTTCTTGTTTGCGCCGGTCATCCTGTTGTGGCTGT TCTGCATAAGTGCCCTCGGGATCTACAATATACTCTACTGGAACGTCCATGTGTATAGAGCTCTTTCCCCGTGCTACATGTACAAGTTCCTGAAGAAAAC AAAGAAATCCGGGTGGATGTCTTTGGGTGGAATACTATTGTGCATAACAGGATCGGAGGCGATGTTTGCTGATCTTGGACACTTCTCATACACTGCAATT CAGATTGCTTTCAGTTTTCTGGTTTATCCAGCGCTCATACTTGCTTATATGGGTCAAGCTGCTTACTTGTCACAACATCACGGCAATGCTAGTGATATCA GCTTTTATATCTTTGTTCCAGGATTGGCTGTGATGACTGTAATGCTGGTAACTACTTGTCTCACTTCCTTGGTCATTATGCTGTGCTGGCACAAGCCACC GATTTTAGCACTCGGATTTCTACTCTTCTTTGGCTCGATCGAGTTGCTGTACTTCTCGGCTTCGCTAACCAAGTTCCGAGAAGGAGCTTGGCTCCCGATC CTCATGGCACTCATCCTCGTCACCATCATGCTGATCTGGCATTACGCCACAATAAAAAAATACGAGTACGACTTGCACAACAAGGTATCGCTAGACTGGC TACTAGCTCTCGGACCGAGTTTGGGAGTCGCTCGAGTCCCCGGAATCGGTTTGATCTTCAGCGATCTCACCTCGGGAATACCGGCCAACTTCTCTCGCTT CGTAACCAACCTCCCTGCCTACCACCGGATCCTCGTCTTCGTATGCGTGAAGTCGGTCACAGTTCCTCACGTCCCGCCAGACGAGAGGTACCTTGTCGGA CGTGTCGGTCCACCTCAGCATCGGTCATATAGGTGCATTGTGCGGTATGGATACCGTGATGTGCATCAGGATGTCGACTCGTTCGAGTCCCAGCTTGTCG CTAAGCTAGCAGACTTTGTTAGATTCGACTGGCACCGTGCAACAAATGGCCAATGCTCGTCCCCAGACGATGATGAAGTGCCACGTTCAGTAGCATCATC GAACGAATGCAGGTTAACCGTGATAGGAACCATGTCGTTTGGTGGCAACCCGGCCTACGAGGTGGACGACACAATGCATGCAGCTAGTGTCTCGGTGGGG ATTAGGACGATAGATAGTTTGACCGATGTTATAGAGATGGAACCGGTCAACGATACAACATCAAGGAGAGTAAGGTTTAGTAGTACAGTCGATGATGATT CGGAATTTCAGTTGGAAGAAGAGTTGAGGGATCTGTTAACAGCGCAGGAGGCCGGGACCGCGTTCATACTAGGGCACTCGCATGTTCAAGCCAAGCAAGG GTCGTCGATCCTGAAGAAGCTGGCGATCGATTTCGGGTATAACTTCATGAGGAAGAACTGTAGAGGACCGGATGTGGCGCTGAAAGTGCCTCCGGTTTCG CTCTTGGAGGTCGGTATGGTGTACATTGTGTGA
AA sequence Show only first row Show all	>Lus10012888 pacid=23163002 polypeptide=Lus10012888 locus=Lus10012888.g ID=Lus10012888.BGIv1.0 annot-version=v1.0 MSQLGVGAVDSGVSKMSQGPKKESWKTLLILAYQSLGVVYGDLSISPLYVFKSTFADDIQHSQSNDEIYGVLSFVFWTLTLVPLFKYVFIVLRADDNGEG GTFALYSLLCRHAKVSLLPNRQVSDESLSTYILEHPPEKKNFCPKTFLEKHKGLHTALLILVLLGTCMVIGDGLLTPAISVFTAVSGLELSMEKHQYAVI PITCFTLVCLFSLQHYGTHRVGFLFAPVILLWLFCISALGIYNILYWNVHVYRALSPCYMYKFLKKTKKSGWMSLGGILLCITGSEAMFADLGHFSYTAI QIAFSFLVYPALILAYMGQAAYLSQHHGNASDISFYIFVPGLAVMTVMLVTTCLTSLVIMLCWHKPPILALGFLLFFGSIELLYFSASLTKFREGAWLPI LMALILVTIMLIWHYATIKKYEYDLHNKVSLDWLLALGPSLGVARVPGIGLIFSDLTSGIPANFSRFVTNLPAYHRILVFVCVKSVTVPHVPPDERYLVG RVGPPQHRSYRCIVRYGYRDVHQDVDSFESQLVAKLADFVRFDWHRATNGQCSSPDDDEVPRSVASSNECRLTVIGTMSFGGNPAYEVDDTMHAASVSVG IRTIDSLTDVIEMEPVNDTTSRRVRFSSTVDDDSEFQLEEELRDLLTAQEAGTAFILGHSHVQAKQGSSILKKLAIDFGYNFMRKNCRGPDVALKVPPVS LLEVGMVYIV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G14880			Potassium transporter family p...		Lus10012888 [exp]	0	1
AT2G06000			Pentatricopeptide repeat (PPR)...		Lus10003347 [exp]	5.3	0.7164
AT4G23440			Disease resistance protein (TI...		Lus10024640 [exp]	8.5	0.7611
AT3G57000			nucleolar essential protein-re...		Lus10032054 [exp]	12.9	0.7637
AT1G62520			unknown protein		Lus10032250 [exp]	15.6	0.6890
AT4G30000			Dihydropterin pyrophosphokinas...		Lus10037062 [exp]	19.1	0.6773
AT2G06000			Pentatricopeptide repeat (PPR)...		Lus10004615 [exp]	33.9	0.7522
AT3G13570		SCL30A, At-SCL3...	SC35-like splicing factor 30A ...		Lus10012932 [exp]	35.4	0.7568
AT1G29320			Transducin/WD40 repeat-like su...		Lus10020991 [exp]	36.3	0.7534
AT4G23750	AP2_ERF	TMO3, CRF2	TARGET OF MONOPTEROS 3, cytoki...		Lus10032353 [exp]	63.7	0.7149
AT5G65640	bHLH	bHLH093	beta HLH protein 93 (.1.2)		Lus10002160 [exp]	64.3	0.7132

Compare expression of checked genes

Lus10012888 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.