Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10960 768 / 0 ATAZG1 AZA-guanine resistant1 (.1) AT5G50300 452 / 4e-153 ATAZG2 ARABIDOPSIS THALIANA AZA-GUANINE RESISTANT2, Xanthine/uracil permease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030548 [exp] 901 / 0 AT3G10960 881 / 0.0 AZA-guanine resistant1 (.1) Lus10009102 [exp] 681 / 0 AT3G10960 780 / 0.0 AZA-guanine resistant1 (.1) Lus10025246 [exp] 681 / 0 AT3G10960 780 / 0.0 AZA-guanine resistant1 (.1) Lus10040894 [exp] 449 / 2e-152 AT5G50300 691 / 0.0 ARABIDOPSIS THALIANA AZA-GUANINE RESISTANT2, Xanthine/uracil permease family protein (.1) Lus10034287 [exp] 61 / 3e-11 AT5G50300 91 / 1e-22 ARABIDOPSIS THALIANA AZA-GUANINE RESISTANT2, Xanthine/uracil permease family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G083300 [exp] 806 / 0 AT3G10960 903 / 0.0 AZA-guanine resistant1 (.1) Potri.016G133800 [exp] 728 / 0 AT3G10960 847 / 0.0 AZA-guanine resistant1 (.1) Potri.015G090000 [exp] 478 / 4e-163 AT5G50300 736 / 0.0 ARABIDOPSIS THALIANA AZA-GUANINE RESISTANT2, Xanthine/uracil permease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF00860 [flax] [poplar] Xan_ur_permease Permease family
Representative CDS sequence Show only first row Show all	>Lus10012895 pacid=23163009 polypeptide=Lus10012895 locus=Lus10012895.g ID=Lus10012895.BGIv1.0 annot-version=v1.0 ATGGACGACCCGGAATCTCCACCTCCGCCGCCACCGCCGGCGGCGGCCAAACCATCCTTCCTCACAGGACTCAACTCCGCCGTCGCCGCATCTTCAATCG GTAAGCGATTCAAACTCGACGCCCGAAACACCACCTTCACCACCGAACTCCGCGCAGGCACCGCCACCTTCCTCACCATGGCCTACATCCTCGCCGTCAA CGCCTCCATCCTCACCGACAGCGGCGGAACCTGCTCCGTCTCCGACTGCGTCCCTCTCTGCTCCGACCCCACCGTCCTTCTCAACCAATGCTCCCGGGTC ATCCAACCCGACTCCTCCTGTAAATTCGACCCGGTCAACCCGGGATACTCTGCCTGCCTTGACCGAACCAGAAAGGATCTAATCGTCGCCACCGTCGCTT CCTCCTTGATCGGATGCTTAATCATGGGGGCTTTCGCTAATCTCCCTTTGGCTCTCGCTCCTGGAATGGGAGCCAATGCGTATTTCGCTTACACAGTCGT CGGATTCCACGGATCTGGAAACGTATCGTATCAGAGCGCTCTGGCAGCGGTTTTCATCGAGGGATTGATCTTCTTAGCAATTTCGGCTGTTGGGTTGAGA GCTAGATTAGCCAAATTGGTACCCAAACCGGTTCGAATCAGCTCGTCGGCCGGAATCGGACTCTTTTTAGCGTTCATCGGTTTACAGAGCAATCAAGGGA TCGGTTTAATCGGTTACAGCTCATCAACTCTAGTCACACTCGGAGCCTGTCCGAAATCTTCTCGAGTTTCGTTAGCTCCGGTGAATGGAACAGGTAGCTT AATCGCCGGCGGGACTATCTCCGGCGAAATCCTCTGCCTCGACAGCCGAATGGAAAGCCCAACTTTCTGGCTTACAAAAAAAACAATTTCTCCGGTGAAT GGAACAGGTAGCTTAATCGCCGGCGGGACTATCTCCGGCGAAATCCTCTGCCTCGACAGCCGAATGGAAAGCCCAACTTTCTGGCTTGGAATCGTCGGAT TCGTAATCATAGCTTACTGTTTGGCGAAGGAGATCAAAGGAGCTATGATTTACGGGATCGTGTTCGTAACCGCCGTCTCCTGGTTCCGTCACACGAAGGT AACGGCGTTTCCCGACGATGCCGCGGGAGACGCGGCCTACGACTATTTTAGAAAAGTAGTCGACGTCCACATCATCGGGTCGACGGCGGGCGCTTTAAGC TTTAAATCGATCGGGTCGGGTCAGTTCTGGGAGGCGCTGGTGACTTTTTTATACGTGGACATTTTGGACACGACGGGGACGCTTTACTCAATGGCAAGAT TCGCCGGATTCGCCGACGAGAATGGCGATTTCGAAGGGCAGTACTTCGCGTTTATGTCGGATGCCACGTCGATTGTGGTGGGTTCCCTTCTGGGGACGTC GCCAGTAACGGCGTTTATCGAGTCGTCGACGGGAATTAGGGAAGGAGGGAGGACGGGGATAACGGCGTTGACGGTGGCGGGTTACTTCTTCTTGGCGTTC TTCTTCACGCCGTTGCTGGCTTCGATTCCGGCCTGGGCGGTGGGGCCGCCGTTGATTTTGGTCGGGGTTCTGATGATGAGATCGGTGGTGGAGATTGATT GGAACGACATGAGGCAGGCGATCCCGGCGTTCGTTACGTTGATTTTGATGCCGTTGACTTACTCGATCGCGTACGGTCTGATCGGCGGGATCGGGACTTA CGTGGTGCTGAACGCACTGGATTGGGCGGAGGGCGGTTTGGTAAAATTGGGGGTTTTGAAGAAAAGAGGCGGTGGTCTGAGTGGCGGCGGTGGCCGTGGT GGTTTTGATGGGTCCCACGGGGAACGGATAGGGCGGGAAGGGAATGTGAAAGCGGCTGAAGATGGAGTTTAA
AA sequence Show only first row Show all	>Lus10012895 pacid=23163009 polypeptide=Lus10012895 locus=Lus10012895.g ID=Lus10012895.BGIv1.0 annot-version=v1.0 MDDPESPPPPPPPAAAKPSFLTGLNSAVAASSIGKRFKLDARNTTFTTELRAGTATFLTMAYILAVNASILTDSGGTCSVSDCVPLCSDPTVLLNQCSRV IQPDSSCKFDPVNPGYSACLDRTRKDLIVATVASSLIGCLIMGAFANLPLALAPGMGANAYFAYTVVGFHGSGNVSYQSALAAVFIEGLIFLAISAVGLR ARLAKLVPKPVRISSSAGIGLFLAFIGLQSNQGIGLIGYSSSTLVTLGACPKSSRVSLAPVNGTGSLIAGGTISGEILCLDSRMESPTFWLTKKTISPVN GTGSLIAGGTISGEILCLDSRMESPTFWLGIVGFVIIAYCLAKEIKGAMIYGIVFVTAVSWFRHTKVTAFPDDAAGDAAYDYFRKVVDVHIIGSTAGALS FKSIGSGQFWEALVTFLYVDILDTTGTLYSMARFAGFADENGDFEGQYFAFMSDATSIVVGSLLGTSPVTAFIESSTGIREGGRTGITALTVAGYFFLAF FFTPLLASIPAWAVGPPLILVGVLMMRSVVEIDWNDMRQAIPAFVTLILMPLTYSIAYGLIGGIGTYVVLNALDWAEGGLVKLGVLKKRGGGLSGGGGRG GFDGSHGERIGREGNVKAAEDGV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G10960		ATAZG1	AZA-guanine resistant1 (.1)		Lus10012895 [exp]	0	1
AT3G10960		ATAZG1	AZA-guanine resistant1 (.1)		Lus10030548 [exp]	1.0	0.8626
AT2G30490		REF3, CYP73A5, ...	REDUCED EPRDERMAL FLUORESCENCE...		Lus10021671 [exp]	5.7	0.8579
AT2G32720		B5 #4, B5#4, AT...	ARABIDOPSIS CYTOCHROME B5 ISOF...		Lus10022794 [exp]	11.7	0.8485
AT2G22250		ATAAT, AAT, MEE...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10032388 [exp]	14.7	0.8309
AT5G01750			Protein of unknown function (D...		Lus10001255 [exp]	16.6	0.8046
AT2G40890		REF8, CYP98A3, ...	cytochrome P450, family 98, su...		Lus10020847 [exp]	20.3	0.8204
AT2G45290			Transketolase (.1)		Lus10030283 [exp]	21.8	0.8194
AT2G32720		B5 #4, B5#4, AT...	ARABIDOPSIS CYTOCHROME B5 ISOF...		Lus10011858 [exp]	23.4	0.8113
AT1G70985			hydroxyproline-rich glycoprote...		Lus10034112 [exp]	23.8	0.8122
AT3G53610		ATRAB8, AtRab8B...	RAB GTPase homolog 8 (.1.2.3)		Lus10003985 [exp]	25.5	0.7793

Compare expression of checked genes

Lus10012895 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.