Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G70300 1104 / 0 KUP6 K+ uptake permease 6, K+ uptake permease 6 (.1) AT5G14880 1049 / 0 Potassium transporter family protein (.1) AT2G40540 885 / 0 ATKUP2, ATKT2, TRK2, SHY3, KT2 potassium transporter 2 (.1.2) AT3G02050 701 / 0 ATKT4, ATKUP3, KUP3 K+ uptake transporter 3, ARABIDOPSIS THALIANA POTASSIUM TRANSPORTER 4, K+ uptake transporter 3 (.1) AT2G30070 670 / 0 ATKUP1, ATKT1P, ATKT1 POTASSIUM UPTAKE TRANSPORTER 1, potassium transporter 1 (.1) AT4G23640 654 / 0 ATKT3, KUP4, TRH1 TINY ROOT HAIR 1, Potassium transporter family protein (.1) AT1G60160 589 / 0 Potassium transporter family protein (.1) AT1G31120 586 / 0 KUP10 K+ uptake permease 10, K+ uptake permease 10 (.1) AT2G35060 578 / 0 KUP11 K+ uptake permease 11, K+ uptake permease 11 (.1), K+ uptake permease 11 (.2) AT4G19960 562 / 0 KT9, HAK9, ATKUP9 K+ uptake permease 9, K+ uptake permease 9 (.1), K+ uptake permease 9 (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030857 [exp] 1242 / 0 AT1G70300 1249 / 0.0 K+ uptake permease 6, K+ uptake permease 6 (.1) Lus10030632 [exp] 1231 / 0 AT1G70300 1238 / 0.0 K+ uptake permease 6, K+ uptake permease 6 (.1) Lus10014531 [exp] 957 / 0 AT5G14880 1098 / 0.0 Potassium transporter family protein (.1) Lus10030539 [exp] 865 / 0 AT2G40540 1245 / 0.0 potassium transporter 2 (.1.2) Lus10034215 [exp] 847 / 0 AT2G40540 1239 / 0.0 potassium transporter 2 (.1.2) Lus10018324 [exp] 593 / 0 AT2G35060 1212 / 0.0 K+ uptake permease 11, K+ uptake permease 11 (.1), K+ uptake permease 11 (.2) Lus10013304 [exp] 580 / 0 AT4G13420 950 / 0.0 high affinity K+ transporter 5, ARABIDOPSIS THALIANA HIGH AFFINITY K+ TRANSPORTER 5, high affinity K+ transporter 5 (.1) Lus10038361 [exp] 561 / 0 AT2G35060 1164 / 0.0 K+ uptake permease 11, K+ uptake permease 11 (.1), K+ uptake permease 11 (.2) Lus10036221 [exp] 560 / 0 AT2G35060 1173 / 0.0 K+ uptake permease 11, K+ uptake permease 11 (.1), K+ uptake permease 11 (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G094300 [exp] 1161 / 0 AT1G70300 1228 / 0.0 K+ uptake permease 6, K+ uptake permease 6 (.1) Potri.008G147400 [exp] 1154 / 0 AT1G70300 1221 / 0.0 K+ uptake permease 6, K+ uptake permease 6 (.1) Potri.019G056500 [exp] 904 / 0 AT2G40540 1272 / 0.0 potassium transporter 2 (.1.2) Potri.013G083400 [exp] 873 / 0 AT2G40540 1225 / 0.0 potassium transporter 2 (.1.2) Potri.014G144900 [exp] 788 / 0 AT3G02050 1175 / 0.0 K+ uptake transporter 3, ARABIDOPSIS THALIANA POTASSIUM TRANSPORTER 4, K+ uptake transporter 3 (.1) Potri.002G237500 [exp] 767 / 0 AT3G02050 1179 / 0.0 K+ uptake transporter 3, ARABIDOPSIS THALIANA POTASSIUM TRANSPORTER 4, K+ uptake transporter 3 (.1) Potri.009G073500 [exp] 721 / 0 AT2G30070 1092 / 0.0 POTASSIUM UPTAKE TRANSPORTER 1, potassium transporter 1 (.1) Potri.003G148200 [exp] 686 / 0 AT2G30070 831 / 0.0 POTASSIUM UPTAKE TRANSPORTER 1, potassium transporter 1 (.1) Potri.015G034200 [exp] 676 / 0 AT2G40540 741 / 0.0 potassium transporter 2 (.1.2) Potri.003G133900 [exp] 669 / 0 AT4G23640 947 / 0.0 TINY ROOT HAIR 1, Potassium transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF02705 [flax] [poplar] K_trans K+ potassium transporter
Representative CDS sequence Show only first row Show all	>Lus10012992 pacid=23149807 polypeptide=Lus10012992 locus=Lus10012992.g ID=Lus10012992.BGIv1.0 annot-version=v1.0 ATGGATCTGGAGACTGGTGCTCATCATAAAAATGTCCAGAAAGAGTCGTGGAGGACGGTATTGACACTAGCGTACCAGAGCTTAGGAGTCGTCTATGGCG ATTTAAGCATTTCCCCTTTGTACGTTTTCAAGAGCACATTTGCTGATGAGGACATAATCCATTCCGAGACCAACGAGGAGATCTTTGGGGTTCTGTCGTT TGTGTTCTGGACTCTCACTTTAGTTCCCTTATTGAAGTATGTGTTCATAGTTCTTAGAGCTGATGATAATGGTGAAGGAGGCACATTTGCTTTATACTCC TTGCTGTGTCGACACGCCCGAGTCAACTCGCTCCCTAATCGCCAGGTGGCAGATGAGGAGCTGTCTGAATACAAGAAGAATAAGGAGAGTTGCAATGATG GATCATCATCAGTTCATCCGGATTTCCCTTCAGGGTTGAAATCAACGCTGGAGAAGCACAGGGTTCTGCAGAGGATCTTGCTGGTTTTGGCCTTGGTTGG GACTTGTATGGTGATTGGTGATGGTGTTCTGACTCCTGCCCTTTCTGTGTTTTCTGCTGTCTCTGGGGTTGAGCTTTCGGTGTCGAAGGAGCATCACAAA TATATTGAACTCCCAGCTTCATGCATCATACTGGTGGGATTATTCGCCCTTCAACAATATGGAACCCACCGAGTCGGTTTCCTATTCGCCCCGGTGGTTC TGATTTGGCTACTATGCATCAGTGCAATTGGGATATACAATATCTTGTATTGGAATCCCCAAGTCTACCAAGCTTTGTCGCCATATTACATGTACAAGTT TCTCAAGAAGACTCAGAGAGGAGGGTGGATGTCATTAGGAGGGATTTTGTTGTGTATAACTGGCTCGGAAGCTATGTTCGCTGATCTTGGCCACTTCTCT CAGTTGTCTATAAAGGCTGCATATCTCTCTACTCATCATGTCATGGAAAATGATTACCAGATCGGTTTCTATGTCTCTGTACCTGATAAAATAAGGTGGC CGGTTCTCGTCATAGCCATACTTGCTGCAGTTGTGGGGAGCCAAGCAATCATCACCGGAACGTTCTCAATCATCAGGCAGTGTTCAGCCCTTGGTTGCTT CCCTAAGGTCAAAGTAGTCCACACGTCGTCAAAAGTCCATGGTCAGATATACATCCCCGAGATCAACTGGATACTGATGCTTCTGTGTCTGGCTGTCACG ATCGGTTTTCGAGACACAAAACGGTTGGGGAATGCTTCAGGTCTGGCAGTTATAACAGTTATGCTGGTCACCACCTGCCTTATGTCTCTCGTCATTGTTC TTTGCTGGAACAAGAGTGTGTTCGTTGCTGTATGTTTCGTGTTCTTCTTCGGATCGATCGAAGCTCTTTACTTTTCAGCTTCCCTCATAAAATTCCTACA AGGAGCTTGGGTCCCCACTGCACTGGCATTCACATTCCTGATCAACATGTGTGTATGGCACTACGGCTCGCTGAAGAAGTATGAATTCGATGTCCAAAAC AAGGTCTCGATCAACTGGCTACTCAGCTTAGGTCCGAGCCTTGGCATTGTTCGAGTCCGGGGAATCGGGATCATACACACCGAGCTAGTGTCAGGAATTC CCGCTATCTTCTCACATTTCGTCACGAACCTGCCAGCATTTCACCAAGTGTTAGTCTTTCTCTGCATCAAATCGGTCCCGGTCCCACATGTCAGGCCCGA GGAGAGATTCTTAGTGGGGCGAATCGGTCCACGAGAGTACAGGCTGTACCGGTGCATAGTAAGGTATGGCTACCGCGATGTCCACAAGGACGATACGGAG TTCGAGAAGGACTTGGTGTGCAGCATCGCTGAGTTCATACGCGGTGGGACCACAGAATGTGACATCGCGAAAGAAGAAGACGATAAGATGACAGTCGTGG GGACGTGTTCTTCTCACACGGATGGGATACGAATGAGCGAGGATGAAAACAATAACAAAGATGATAAGATCGAAGAACCAGAAAACCAATTGAGGAAGCG AGTGAGGTTTATTGTCCCGGAGAGCCCCAAGATCGATAAAGCTGCAGGGGGTGAGTTGCAGGAACTGATGGAAGCGAGGGAAGCCGGGATAGCGTACATC GTTGGGCACTCGCATATAAGAGCGAAGCAAGGATCGAGCATGTTGAAGAGGTTTGTGGTGAACTATGGGTATGAGTTCTTGAGGAGGAATAGCAGGGGGG CAACAGATGGGCTTAGTGTGCCTCATGCATCAACGTTAGAGGTAGGTATGATGTACAGTGTTTAG
AA sequence Show only first row Show all	>Lus10012992 pacid=23149807 polypeptide=Lus10012992 locus=Lus10012992.g ID=Lus10012992.BGIv1.0 annot-version=v1.0 MDLETGAHHKNVQKESWRTVLTLAYQSLGVVYGDLSISPLYVFKSTFADEDIIHSETNEEIFGVLSFVFWTLTLVPLLKYVFIVLRADDNGEGGTFALYS LLCRHARVNSLPNRQVADEELSEYKKNKESCNDGSSSVHPDFPSGLKSTLEKHRVLQRILLVLALVGTCMVIGDGVLTPALSVFSAVSGVELSVSKEHHK YIELPASCIILVGLFALQQYGTHRVGFLFAPVVLIWLLCISAIGIYNILYWNPQVYQALSPYYMYKFLKKTQRGGWMSLGGILLCITGSEAMFADLGHFS QLSIKAAYLSTHHVMENDYQIGFYVSVPDKIRWPVLVIAILAAVVGSQAIITGTFSIIRQCSALGCFPKVKVVHTSSKVHGQIYIPEINWILMLLCLAVT IGFRDTKRLGNASGLAVITVMLVTTCLMSLVIVLCWNKSVFVAVCFVFFFGSIEALYFSASLIKFLQGAWVPTALAFTFLINMCVWHYGSLKKYEFDVQN KVSINWLLSLGPSLGIVRVRGIGIIHTELVSGIPAIFSHFVTNLPAFHQVLVFLCIKSVPVPHVRPEERFLVGRIGPREYRLYRCIVRYGYRDVHKDDTE FEKDLVCSIAEFIRGGTTECDIAKEEDDKMTVVGTCSSHTDGIRMSEDENNNKDDKIEEPENQLRKRVRFIVPESPKIDKAAGGELQELMEAREAGIAYI VGHSHIRAKQGSSMLKRFVVNYGYEFLRRNSRGATDGLSVPHASTLEVGMMYSV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G70300		KUP6	K+ uptake permease 6, K+ uptak...		Lus10012992 [exp]	0	1
AT4G38470		STY46	serine/threonine/tyrosine kina...		Lus10022653 [exp]	4.0	0.7512
AT3G02645			Plant protein of unknown funct...		Lus10026964 [exp]	8.2	0.7686
AT5G13790	MADS	AGL15	AGAMOUS-like 15 (.1)		Lus10005325 [exp]	9.4	0.7399
AT4G23820			Pectin lyase-like superfamily ...		Lus10001899 [exp]	11.1	0.7449
AT1G19050		ARR7	response regulator 7 (.1)		Lus10036642 [exp]	16.1	0.6630
AT4G10730			Protein kinase superfamily pro...		Lus10001677 [exp]	18.7	0.6820
AT1G77580			Plant protein of unknown funct...		Lus10025674 [exp]	19.1	0.6996
AT4G39150			DNAJ heat shock N-terminal dom...		Lus10041972 [exp]	19.7	0.7072
AT5G14210			Leucine-rich repeat protein ki...		Lus10035225 [exp]	20.0	0.7266
AT4G36930	bHLH	SPT, bHLH024	SPATULA, basic helix-loop-heli...		Lus10018724 [exp]	21.2	0.7255

Compare expression of checked genes

Lus10012992 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.