Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G60160 1124 / 0 Potassium transporter family protein (.1) AT5G09400 809 / 0 KUP7 K+ uptake permease 7, K+ uptake permease 7 (.1) AT4G33530 807 / 0 KUP5 K+ uptake permease 5, K+ uptake permease 5 (.1) AT4G13420 617 / 0 HAK5, ATHAK5 high affinity K+ transporter 5, ARABIDOPSIS THALIANA HIGH AFFINITY K+ TRANSPORTER 5, high affinity K+ transporter 5 (.1) AT2G40540 599 / 0 ATKUP2, ATKT2, TRK2, SHY3, KT2 potassium transporter 2 (.1.2) AT2G35060 598 / 0 KUP11 K+ uptake permease 11, K+ uptake permease 11 (.1), K+ uptake permease 11 (.2) AT1G31120 596 / 0 KUP10 K+ uptake permease 10, K+ uptake permease 10 (.1) AT5G14880 580 / 0 Potassium transporter family protein (.1) AT4G19960 569 / 0 KT9, HAK9, ATKUP9 K+ uptake permease 9, K+ uptake permease 9 (.1), K+ uptake permease 9 (.2) AT1G70300 560 / 0 KUP6 K+ uptake permease 6, K+ uptake permease 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003402 [exp] 843 / 0 AT5G09400 1296 / 0.0 K+ uptake permease 7, K+ uptake permease 7 (.1) Lus10036160 [exp] 822 / 0 AT5G09400 1204 / 0.0 K+ uptake permease 7, K+ uptake permease 7 (.1) Lus10029172 [exp] 683 / 0 AT2G30070 590 / 0.0 POTASSIUM UPTAKE TRANSPORTER 1, potassium transporter 1 (.1) Lus10027004 [exp] 633 / 0 AT4G13420 828 / 0.0 high affinity K+ transporter 5, ARABIDOPSIS THALIANA HIGH AFFINITY K+ TRANSPORTER 5, high affinity K+ transporter 5 (.1) Lus10025493 [exp] 629 / 0 AT4G13420 826 / 0.0 high affinity K+ transporter 5, ARABIDOPSIS THALIANA HIGH AFFINITY K+ TRANSPORTER 5, high affinity K+ transporter 5 (.1) Lus10018324 [exp] 612 / 0 AT2G35060 1212 / 0.0 K+ uptake permease 11, K+ uptake permease 11 (.1), K+ uptake permease 11 (.2) Lus10030857 [exp] 604 / 0 AT1G70300 1249 / 0.0 K+ uptake permease 6, K+ uptake permease 6 (.1) Lus10013304 [exp] 595 / 0 AT4G13420 950 / 0.0 high affinity K+ transporter 5, ARABIDOPSIS THALIANA HIGH AFFINITY K+ TRANSPORTER 5, high affinity K+ transporter 5 (.1) Lus10030632 [exp] 593 / 0 AT1G70300 1238 / 0.0 K+ uptake permease 6, K+ uptake permease 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G094400 [exp] 1198 / 0 AT1G60160 1209 / 0.0 Potassium transporter family protein (.1) Potri.003G023900 [exp] 844 / 0 AT5G09400 1120 / 0.0 K+ uptake permease 7, K+ uptake permease 7 (.1) Potri.001G205500 [exp] 818 / 0 AT5G09400 1081 / 0.0 K+ uptake permease 7, K+ uptake permease 7 (.1) Potri.008G147300 [exp] 639 / 0 AT1G60160 651 / 0.0 Potassium transporter family protein (.1) Potri.001G045200 [exp] 637 / 0 AT4G13420 978 / 0.0 high affinity K+ transporter 5, ARABIDOPSIS THALIANA HIGH AFFINITY K+ TRANSPORTER 5, high affinity K+ transporter 5 (.1) Potri.001G069650 [exp] 635 / 0 AT4G13420 951 / 0.0 high affinity K+ transporter 5, ARABIDOPSIS THALIANA HIGH AFFINITY K+ TRANSPORTER 5, high affinity K+ transporter 5 (.1) Potri.001G123800 [exp] 629 / 0 AT2G35060 1149 / 0.0 K+ uptake permease 11, K+ uptake permease 11 (.1), K+ uptake permease 11 (.2) Potri.003G109700 [exp] 624 / 0 AT2G35060 1155 / 0.0 K+ uptake permease 11, K+ uptake permease 11 (.1), K+ uptake permease 11 (.2) Potri.014G144900 [exp] 617 / 0 AT3G02050 1175 / 0.0 K+ uptake transporter 3, ARABIDOPSIS THALIANA POTASSIUM TRANSPORTER 4, K+ uptake transporter 3 (.1) Potri.014G132500 [exp] 617 / 0 AT4G13420 852 / 0.0 high affinity K+ transporter 5, ARABIDOPSIS THALIANA HIGH AFFINITY K+ TRANSPORTER 5, high affinity K+ transporter 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF02705 [flax] [poplar] K_trans K+ potassium transporter
Representative CDS sequence Show only first row Show all	>Lus10012993 pacid=23149880 polypeptide=Lus10012993 locus=Lus10012993.g ID=Lus10012993.BGIv1.0 annot-version=v1.0 ATGGAGGAGGAAGGGGGTGATAGGATTGAAGAGTGCAGTGAGAGGTTGCTGGAGAGTGGCAGCAGGAAAGGGAGTGGGGGAGGGGAGATATGGGTTGATG GAAGTGAAGTTGATTCAGATTCTCCTCCTCTATCTTTGCTTGATGGGAGTAATGATGGAAGCAAATTACAAGGAAGAAATGGAGGAGGGTATGGTGGGAC TATGAGGAGGAGGTTGGTGAAGAAGCCCAAGAGAGTTGACTCTTTCGATGTTGAGTCCATGGAGATTGCTGGTGCTCTCACCCACCACAATAAGGAAGTC TCAACTTTGGCAACTATTGGATTGGCCTTTCAAACGCTTGGAGTGGTCTATGGCGACATGGGAACAAGCCCTTTATATGTGTTTACTGATGTATTCAGCA AGGTTCCCATCGAGTCTGAGATTGATGTGTTGGGAGCTTTATCAACAGTTATGTACACAATAGCTCTCATTCCCCTAGCCAAATATGTCTTTGTGGTGTT GAAAGCAAATGACAATGGGGAAGGAGGAACATTTGCTCTGTACTCACTGATCTCCAGATATGCAAAGGTTAACATGCTGCCAAATCGTCAGCCAGCAGAT GAACAGATATCGAGTTTCAAGCTGAAGTTACCTATCCCGGAGCTCGAAAGGGCTTTGAGCATTAAGGAACTCCTGGAAACAAGACCCTTCTTGAAAACAC TTCTGTTGCTTTTGGTGCTTATGGGGACTTCCATGGTTATAGGAGATGGTATCCTTACCCCTGCGATATCAGTGATGTCTGCTACAAGTGGCCTGCAAGG TGAAGTGTCTGGATTTGGTACAAGTAGGTTGCCCTTGGTTGCAGATGCTGTGGTTGCCGTTTCAATAGTTATCCTCTTGGCCTTGTTTGGCATACAACGG TTTGGGACAGGCAAAGTCGGCATCATGTTTGCTCCAGTTCTTGGTTTATGGTTCTTCTCACTGGGTGCCATTGGAATATTCAATCTAGTGGAGTATGATA TATCTGTACTGAGAGCACTCAATCCAGCTTATATCTATTTCTTCTTCCAGAAGAATGGCGTTGCTGCATGGTCAGCTCTTGGTGGCTGTGTCTTGTGCAT TACAGGAGCTGAAGCTATGTTTGCAGATTTGGGGCATTTCTCTGTGCAATCCATACAACTTGCTTTCACATTTGTGGTGTTCCCTTGTCTTCTCTTGGCG TACATGGGCCAGGCTGCATACTTTATGAAACATCCTGATTCCGCTAGCAGAATCTTCTATGATTCCGTTCCAGAAAGCCTCTTCTGGCCAGTCTTCATCA TAGCCACACTGGCTGCCATGATTGCTAGTCAGGCAATGATCTCAGCAACATTCTCTTGTGTAAAGCAATCCATGGCTCTCGGATGCTTCCCTAGGCTGAA GATCATCCACACATCGAAAAGGCGAATGGGTCAGATATACATCCCAGTAATCAATTACTTCCTAATGATAATGTGCATCATTGTAGTTGCCATCTTCCGG AGCACCACAGATATCGCCAATGCCTATGGCATTGCCGAAGTTGGAGTGATGCTTGTGACCACCACTCTAGTAACCTTGGTTATGGTTCTCATATGGCAGA CTAACTTAGCTCTTGCCTTGTTGTTTCCTCTTGTATTTGGATCAATAGAGCTCATCTATCAGTCAGCAGTTCTGTCGAAACTCTTAGAAGGCGGCTGGCT CCCTCTAGCTTTCGCCTCGTTCTTCCTCTGTGTGATGTACATTTGGAACTACGGAAGTGTTCTCAAGTACCGGAGCGAGGTAAGGGAGAAGATATCCATG GATTTGATGCATGATCTGAGCCCTGACCTCGGCACAGTAAGAGTTCCAGGCATCGGACTACTATACAACGAACTCGTGACAGGGGTCCCATCGATCTTTG GACAGTTCCTACTGAGCCTTCCAGCTATCCAGTCAACCATAGTGTTTGTATGCATCAAGTACGTACCAGTACCAGTAGTCCCTCAAGAGGAAAGGTTCCT GTTCAGAAGAGTTTGCCCCCAAGACTACCACATGTTCAGGTGTGTTGCCCGGTACGGTTACAAAGATGTCAGGAAGGAGCATCACCAGTCGTTCGAGCAG CTCCTTGCCGAAAGCCTTGAGAAGTTCCTCCGCAAGGAGGCTCAGGATCTCGCCCTCGAGGCCAGCCTAATTAACGAATTCACCAACATGGACAGCATTT TGGTAGAATCAGCCCCAACTGGTGACCTGACAACTCCATTGTTAATGAACAATGATGAAGCAGGAACTTCAGAACCAGCAGTAGTTGATCCCTTGGGAAG AACACTACTGCCATCCAGTGTGATGTCATCGGAAGAAGATCCGAGCCTGGAATACGAGCTGACAGTACTTCGAGAAGCGATGGATTCGGGTTTTACTTAT CTGCTAGCTCATGGAGATGTAAGGGCGAAAAAGGAATCTTTTTTCCTGAAGAAACTGGTGATTAACTACTTGTATGCATTCCTGAGGAAGAACTGCAGAG CTGGTGCTGCTAATCTGAAAGTGCCTCATATGAATATCTTGCGGGTTAGAATGACTTACATGGTATGA
AA sequence Show only first row Show all	>Lus10012993 pacid=23149880 polypeptide=Lus10012993 locus=Lus10012993.g ID=Lus10012993.BGIv1.0 annot-version=v1.0 MEEEGGDRIEECSERLLESGSRKGSGGGEIWVDGSEVDSDSPPLSLLDGSNDGSKLQGRNGGGYGGTMRRRLVKKPKRVDSFDVESMEIAGALTHHNKEV STLATIGLAFQTLGVVYGDMGTSPLYVFTDVFSKVPIESEIDVLGALSTVMYTIALIPLAKYVFVVLKANDNGEGGTFALYSLISRYAKVNMLPNRQPAD EQISSFKLKLPIPELERALSIKELLETRPFLKTLLLLLVLMGTSMVIGDGILTPAISVMSATSGLQGEVSGFGTSRLPLVADAVVAVSIVILLALFGIQR FGTGKVGIMFAPVLGLWFFSLGAIGIFNLVEYDISVLRALNPAYIYFFFQKNGVAAWSALGGCVLCITGAEAMFADLGHFSVQSIQLAFTFVVFPCLLLA YMGQAAYFMKHPDSASRIFYDSVPESLFWPVFIIATLAAMIASQAMISATFSCVKQSMALGCFPRLKIIHTSKRRMGQIYIPVINYFLMIMCIIVVAIFR STTDIANAYGIAEVGVMLVTTTLVTLVMVLIWQTNLALALLFPLVFGSIELIYQSAVLSKLLEGGWLPLAFASFFLCVMYIWNYGSVLKYRSEVREKISM DLMHDLSPDLGTVRVPGIGLLYNELVTGVPSIFGQFLLSLPAIQSTIVFVCIKYVPVPVVPQEERFLFRRVCPQDYHMFRCVARYGYKDVRKEHHQSFEQ LLAESLEKFLRKEAQDLALEASLINEFTNMDSILVESAPTGDLTTPLLMNNDEAGTSEPAVVDPLGRTLLPSSVMSSEEDPSLEYELTVLREAMDSGFTY LLAHGDVRAKKESFFLKKLVINYLYAFLRKNCRAGAANLKVPHMNILRVRMTYMV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G60160			Potassium transporter family p...		Lus10012993 [exp]	0	1
AT2G39220		PLP6, PLAIIB ,P...	PATATIN-like protein 6 (.1)		Lus10040394 [exp]	2.0	0.9200
AT2G21120			Protein of unknown function (D...		Lus10026280 [exp]	3.2	0.9133
AT4G29800		PLP8, PLAIVD ,P...	PATATIN-like protein 8 (.1.2)		Lus10023512 [exp]	11.3	0.8957
AT5G01950			Leucine-rich repeat protein ki...		Lus10035605 [exp]	15.8	0.9047
AT2G26510		PDE135	pigment defective embryo 135, ...		Lus10002787 [exp]	16.3	0.8917
AT5G12200		PYD2	pyrimidine 2 (.1)		Lus10026817 [exp]	19.7	0.8907
AT1G18470			Transmembrane Fragile-X-F-asso...		Lus10032471 [exp]	21.3	0.8996
AT5G51070		SAG15, CLPD, ER...	SENESCENCE ASSOCIATED GENE 15,...		Lus10043013 [exp]	22.2	0.8919
AT1G73980			Phosphoribulokinase / Uridine ...		Lus10009678 [exp]	25.3	0.8946
AT5G36930			Disease resistance protein (TI...		Lus10038532 [exp]	28.6	0.8904

Compare expression of checked genes

Lus10012993 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.