Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10750 640 / 0 Protein of Unknown Function (DUF239) (.1) AT1G23340 629 / 0 Protein of Unknown Function (DUF239) (.1), Protein of Unknown Function (DUF239) (.2) AT1G70550 628 / 0 Protein of Unknown Function (DUF239) (.1), Protein of Unknown Function (DUF239) (.2) AT5G50150 606 / 0 Protein of Unknown Function (DUF239) (.1) AT5G18460 476 / 6e-166 Protein of Unknown Function (DUF239) (.1) AT3G13510 469 / 1e-163 Protein of Unknown Function (DUF239) (.1) AT1G55360 464 / 2e-161 Protein of Unknown Function (DUF239) (.1) AT5G56530 441 / 3e-152 Protein of Unknown Function (DUF239) (.1), Protein of Unknown Function (DUF239) (.2) AT2G44210 414 / 9e-142 Protein of Unknown Function (DUF239) (.1), Protein of Unknown Function (DUF239) (.2) AT2G44220 379 / 3e-128 Protein of Unknown Function (DUF239) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029116 [exp] 875 / 0 AT1G10750 642 / 0.0 Protein of Unknown Function (DUF239) (.1) Lus10001248 [exp] 558 / 0 AT5G50150 580 / 0.0 Protein of Unknown Function (DUF239) (.1) Lus10039949 [exp] 527 / 0 AT5G50150 575 / 0.0 Protein of Unknown Function (DUF239) (.1) Lus10027683 [exp] 527 / 0 AT5G50150 575 / 0.0 Protein of Unknown Function (DUF239) (.1) Lus10042092 [exp] 519 / 0 AT5G50150 540 / 0.0 Protein of Unknown Function (DUF239) (.1) Lus10004766 [exp] 475 / 2e-165 AT5G18460 603 / 0.0 Protein of Unknown Function (DUF239) (.1) Lus10003100 [exp] 459 / 1e-158 AT5G18460 593 / 0.0 Protein of Unknown Function (DUF239) (.1) Lus10013410 [exp] 452 / 7e-157 AT3G13510 708 / 0.0 Protein of Unknown Function (DUF239) (.1) Lus10010315 [exp] 380 / 5e-129 AT3G13510 626 / 0.0 Protein of Unknown Function (DUF239) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G044300 [exp] 710 / 0 AT1G70550 664 / 0.0 Protein of Unknown Function (DUF239) (.1), Protein of Unknown Function (DUF239) (.2) Potri.008G188000 [exp] 701 / 0 AT1G70550 661 / 0.0 Protein of Unknown Function (DUF239) (.1), Protein of Unknown Function (DUF239) (.2) Potri.015G080300 [exp] 608 / 0 AT5G50150 637 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.012G088300 [exp] 600 / 0 AT5G50150 592 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.019G024100 [exp] 480 / 1e-167 AT5G18460 622 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.013G050100 [exp] 478 / 1e-166 AT5G18460 635 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.003G221200 [exp] 461 / 2e-160 AT1G55360 716 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.001G003800 [exp] 455 / 6e-158 AT1G55360 689 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.001G233000 [exp] 442 / 8e-153 AT3G13510 621 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.006G233600 [exp] 227 / 5e-69 AT5G25950 310 / 3e-102 Protein of Unknown Function (DUF239) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03080 [flax] [poplar] Neprosin Neprosin
Representative CDS sequence Show only first row Show all	>Lus10013046 pacid=23149863 polypeptide=Lus10013046 locus=Lus10013046.g ID=Lus10013046.BGIv1.0 annot-version=v1.0 ATGGTGGGTTCAGTGTACTGTGTCGAAAGCTGCAGTAGAAGCTTCTCCAGCCGCCATTGCTGTTCTGTACTCGATCTCAGAACACGACAACAGGAAGAAG ATGAAGTAGCTCACCCACAACAATGTCGGCTCCAACAAAGGAATAAAACAACAACAGAAGAAGAAGAAGAAGACACACAAAACCCAGAATCCAAATCATC GGAAGACTCCATGGAAGATGATTCGACCACTAAATTTTGTCGGAACAGCAGAAACAAAACCTCCCCTGTTTTTTTCTCCCTCTGTTTCTTCCTCCTCCTC TGCCTCTCCAATTCCTCCTCCGACCGGACCGGATTCAACCGAACCGGTCAATCTCTCCACCCCGGTGAGCAATTACAGCGGATTAAGTTCGTTAAAGAAC GCCTCCACAAGATTAACAAGCCTCCCGTCAAGTCAATTGAGAGTCCAGACGGGGATATAATCGACTGCATCCCGTCCCACCAGCAACCGGCTTTCGACCA TCCTCAATTGGAAGGACAGAAGCCGTTGGATCCCCCGGAGATGCCGCAGGGCCACAATCCGACGGGTGACGTGGCGGTGAGTTTCCAGGCGTGGAGCATG TCGGGGGACACGTGTCCGGACGGTACAATTCCGATCAGGAGGACGACGGAGGATGACGTGTTGAGAGCGAGCAGCTTGAATGCGTTCGGGAAGAAGCTCC GGAGACATGTTCGTCGAGATACCAACAGCAATGGCCATGAGCATGCGGTTGGGTATGTGAGCGGAGATCAATACTACGGGGCGAAGGCGAGCATCAACGT ATGGGCGCCGCAAGTGACGAACCAGTACGAGTTTAGCCTGTCGCAAATGTGGGTGATTTCTGGTTCTTTTGGGGACGACCTTAACACAATCGAAGCTGGT TGGCAGGTTAGTCCTGAATTGTATGGGGACAACTATCCTAGGTTCTTCACATATTGGACTACGGATGCTTATCAAGCAACCGGATGCTACAATCTACTAT GCTCGGGATTCATCCAGACCAACAACAGGATCGCGATCGGGGCAGCCATTTCCCCGACTTCTGCCTACACCGGTGGCCAGTTCGACATTAGCTTGTTGAT TTGGAAGGACCCGAAACACGGAAACTGGTGGCTAGAATTCGGGTCGGGAGTCCTAGTCGGTTACTGGCCGGCATTCCTGTTCACGCATTTGAGAGACCAC GCAACCATGGTGCAATACGGAGGCGAAGTGGTGAACTCGAGGGCATCAGGGTTCCACACATCGACACAGATGGGGAGTGGGCATTTTGCAGGGGAAGGGT TTGGGAAAGCATCCTACTTCAGAAACTTGCAAGTTGTGGATTGGGACAACAACTTGGTGCCATTGTCAAACCTCAAGGTGTTGGCTGACCACCCAAATTG TTATGACATCCAAGGTGGGATCAACAAGGTTTGGGGGAATTACTTTTACTATGGTGGTCCTGGTAGAAACGTCAGATGTCCCTAG
AA sequence Show only first row Show all	>Lus10013046 pacid=23149863 polypeptide=Lus10013046 locus=Lus10013046.g ID=Lus10013046.BGIv1.0 annot-version=v1.0 MVGSVYCVESCSRSFSSRHCCSVLDLRTRQQEEDEVAHPQQCRLQQRNKTTTEEEEEDTQNPESKSSEDSMEDDSTTKFCRNSRNKTSPVFFSLCFFLLL CLSNSSSDRTGFNRTGQSLHPGEQLQRIKFVKERLHKINKPPVKSIESPDGDIIDCIPSHQQPAFDHPQLEGQKPLDPPEMPQGHNPTGDVAVSFQAWSM SGDTCPDGTIPIRRTTEDDVLRASSLNAFGKKLRRHVRRDTNSNGHEHAVGYVSGDQYYGAKASINVWAPQVTNQYEFSLSQMWVISGSFGDDLNTIEAG WQVSPELYGDNYPRFFTYWTTDAYQATGCYNLLCSGFIQTNNRIAIGAAISPTSAYTGGQFDISLLIWKDPKHGNWWLEFGSGVLVGYWPAFLFTHLRDH ATMVQYGGEVVNSRASGFHTSTQMGSGHFAGEGFGKASYFRNLQVVDWDNNLVPLSNLKVLADHPNCYDIQGGINKVWGNYFYYGGPGRNVRCP

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G10750			Protein of Unknown Function (D...		Lus10013046 [exp]	0	1
AT1G14185			Glucose-methanol-choline (GMC)...		Lus10030456 [exp]	1.4	0.8278
AT5G26780		SHM2	serine hydroxymethyltransferas...		Lus10028218 [exp]	9.2	0.8297
AT1G73590		ATPIN1, PIN1	ARABIDOPSIS THALIANA PIN-FORME...		Lus10018006 [exp]	9.9	0.7849
AT1G73590		ATPIN1, PIN1	ARABIDOPSIS THALIANA PIN-FORME...		Lus10042004 [exp]	13.6	0.7781
AT5G02440			unknown protein		Lus10016560 [exp]	15.1	0.6999
AT1G60810		ACLA-2	ATP-citrate lyase A-2 (.1)		Lus10013032 [exp]	16.3	0.7963
AT1G73590		ATPIN1, PIN1	ARABIDOPSIS THALIANA PIN-FORME...		Lus10042003 [exp]	19.0	0.7776
AT2G16920		UBC23 ,PFU2	PHO2 FAMILY UBIQUITIN CONJUGAT...		Lus10034472 [exp]	19.7	0.7436
AT4G14010		RALFL32	ralf-like 32 (.1)		Lus10008885 [exp]	20.0	0.7056
AT2G30340	AS2	LBD13	LOB domain-containing protein ...		Lus10024183 [exp]	20.2	0.7894

Compare expression of checked genes

Lus10013046 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.